Wall clock time and date at job start Mon Mar 30 2020 07:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00414 * 2 1 4 4 H 1.48501 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46806 * 299.99677 * 3 2 1 6 6 H 1.48497 * 109.47051 * 59.99454 * 3 2 1 7 7 C 1.37882 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00249 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46983 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46846 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.46891 * 174.86260 * 12 11 10 14 14 C 1.47958 * 111.00122 * 175.70871 * 13 12 11 15 15 C 1.54150 * 107.04288 * 214.29717 * 14 13 12 16 16 C 1.53884 * 104.96122 * 1.65752 * 15 14 13 17 17 C 1.48664 * 111.00635 * 58.18266 * 13 12 11 18 18 C 1.52340 * 110.59898 * 262.87463 * 16 15 14 19 19 C 1.53235 * 109.22950 * 292.03472 * 18 16 15 20 20 O 1.42919 * 109.32217 * 303.65852 * 19 18 16 21 21 C 1.42926 * 114.22982 * 61.76271 * 20 19 18 22 22 C 1.52338 * 110.59491 * 139.66676 * 16 15 14 23 23 H 0.96998 * 119.99769 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47346 * 59.99508 * 9 7 2 25 25 H 1.09001 * 109.46900 * 300.00437 * 9 7 2 26 26 H 1.09000 * 109.47027 * 59.99939 * 10 9 7 27 27 H 1.08997 * 109.46890 * 299.99703 * 10 9 7 28 28 H 1.09000 * 109.47263 * 60.00115 * 11 10 9 29 29 H 1.08997 * 109.47091 * 299.99611 * 11 10 9 30 30 H 1.09000 * 109.46892 * 294.85565 * 12 11 10 31 31 H 1.08996 * 109.47328 * 54.85500 * 12 11 10 32 32 H 1.08997 * 109.92221 * 333.65045 * 14 13 12 33 33 H 1.09002 * 109.92192 * 94.75053 * 14 13 12 34 34 H 1.09001 * 110.33807 * 120.52314 * 15 14 13 35 35 H 1.09000 * 110.34470 * 242.78828 * 15 14 13 36 36 H 1.08994 * 110.67561 * 277.42054 * 17 13 12 37 37 H 1.09003 * 110.66804 * 40.56521 * 17 13 12 38 38 H 1.08996 * 109.50923 * 51.96152 * 18 16 15 39 39 H 1.08995 * 109.50832 * 172.10732 * 18 16 15 40 40 H 1.08991 * 109.49918 * 183.70347 * 19 18 16 41 41 H 1.09005 * 109.52276 * 63.62574 * 19 18 16 42 42 H 1.09003 * 109.49539 * 178.28688 * 21 20 19 43 43 H 1.09002 * 109.52767 * 58.20515 * 21 20 19 44 44 H 1.08999 * 109.51150 * 187.88958 * 22 16 15 45 45 H 1.09008 * 109.50671 * 308.03392 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 2.4743 -6.1501 0.0044 13 7 1.7439 -7.4185 0.1290 14 6 2.6647 -8.5725 0.0316 15 6 1.8971 -9.7043 -0.6797 16 6 0.5190 -9.1037 -1.0090 17 6 0.7667 -7.5818 -0.9793 18 6 -0.5036 -9.4967 0.0496 19 6 -0.7695 -11.0031 -0.0401 20 8 -1.1955 -11.3300 -1.3646 21 6 -0.2291 -11.0457 -2.3786 22 6 0.0611 -9.5411 -2.3945 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6040 0.8923 27 1 2.8724 -3.6048 -0.8877 28 1 0.8538 -5.0455 -0.8877 29 1 0.8531 -5.0442 0.8922 30 1 3.0395 -6.1464 -0.9276 31 1 3.1594 -6.0411 0.8451 32 1 3.5444 -8.2976 -0.5503 33 1 2.9650 -8.8933 1.0292 34 1 2.4125 -9.9944 -1.5953 35 1 1.7878 -10.5628 -0.0171 36 1 -0.1568 -7.0459 -0.7603 37 1 1.1949 -7.2432 -1.9228 38 1 -0.1153 -9.2538 1.0387 39 1 -1.4322 -8.9522 -0.1216 40 1 -1.5485 -11.2780 0.6708 41 1 0.1448 -11.5489 0.1930 42 1 -0.6197 -11.3511 -3.3493 43 1 0.6908 -11.5914 -2.1685 44 1 -0.8442 -8.9986 -2.6668 45 1 0.8457 -9.3293 -3.1209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385269624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:56 Heat of formation + Delta-G solvation = -72.426538 kcal Electronic energy + Delta-G solvation = -20783.165526 eV Core-core repulsion = 17799.154291 eV Total energy + Delta-G solvation = -2984.011235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.65452 -38.06826 -35.23255 -33.56468 -32.10425 -31.39942 -30.06446 -28.21724 -26.97042 -24.40715 -23.83933 -22.94356 -21.98133 -20.48516 -19.99440 -18.72586 -16.53440 -16.27321 -16.21486 -15.90225 -15.47166 -15.00069 -14.60920 -14.39662 -14.10362 -13.84859 -13.53606 -12.97457 -12.81331 -12.45512 -12.36589 -12.00447 -11.72866 -11.53939 -11.51358 -11.41227 -11.10626 -11.05381 -10.96603 -10.59904 -10.52147 -10.45346 -10.37765 -10.30994 -9.63725 -9.58936 -9.24270 -8.97786 -8.35850 -8.31599 -5.96822 -3.98913 3.32355 3.39598 3.43921 3.65641 3.98362 4.27953 4.42104 4.48021 4.51808 4.79091 4.86728 4.91194 5.03152 5.10254 5.19440 5.32023 5.38306 5.39359 5.41928 5.44830 5.52500 5.56194 5.61977 5.71826 5.73829 5.83581 5.90077 5.91281 5.94480 6.11889 6.12979 6.18092 6.29488 6.50863 6.81648 6.94025 6.97537 6.98239 7.09423 7.25549 7.72532 7.88250 8.04417 8.47364 9.08815 9.64907 11.14582 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038947 B = 0.002993 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.756556 B = 9352.128110 C = 9659.100120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.048 3.952 13 N -0.516 5.516 14 C 0.035 3.965 15 C -0.124 4.124 16 C -0.063 4.063 17 C 0.047 3.953 18 C -0.134 4.134 19 C 0.059 3.941 20 O -0.385 6.385 21 C 0.063 3.937 22 C -0.143 4.143 23 H 0.259 0.741 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.075 0.925 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 -24.116 -2.665 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.152 4.152 12 C -0.080 4.080 13 N -0.240 5.240 14 C -0.093 4.093 15 C -0.162 4.162 16 C -0.064 4.064 17 C -0.081 4.081 18 C -0.172 4.172 19 C -0.017 4.017 20 O -0.304 6.304 21 C -0.014 4.014 22 C -0.181 4.181 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.056 -24.054 -2.187 24.177 hybrid contribution 1.228 1.243 -0.749 1.901 sum 2.284 -22.812 -2.937 23.113 Atomic orbital electron populations 1.69981 1.06039 1.26394 1.51132 1.25040 0.94849 0.99240 0.95448 0.86557 0.80115 0.83896 0.77558 1.19777 1.21046 1.21014 1.21329 0.93043 0.91211 1.50170 0.92739 1.19089 0.94019 0.91355 0.97122 1.21595 0.99081 0.93989 1.00034 1.21673 0.97858 0.93781 1.01925 1.22415 0.96471 0.89057 1.00013 1.64830 1.14351 1.01838 1.42949 1.22876 0.94818 0.91231 1.00346 1.22516 0.95106 0.98226 1.00315 1.20934 0.94936 0.95558 0.94961 1.23209 0.97474 0.94335 0.93073 1.21992 0.99132 0.96208 0.99873 1.22684 0.99984 0.94867 0.84192 1.87913 1.42034 1.84811 1.15638 1.22580 0.92444 0.94532 0.91825 1.22112 1.02368 0.97158 0.96493 0.93112 0.96784 0.96614 0.93432 0.93751 0.92755 0.91630 0.95162 0.90866 0.93970 0.90589 0.91522 0.91020 0.89603 0.93582 0.89752 0.90921 0.88955 0.93283 0.89062 0.93317 0.90649 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.11 -2.00 4.90 -26.73 -0.13 -2.13 16 12 C 0.05 0.70 4.84 -3.82 -0.02 0.68 16 13 N -0.52 -6.68 5.32 -230.66 -1.23 -7.90 16 14 C 0.04 0.38 6.71 -2.64 -0.02 0.36 16 15 C -0.12 -1.10 5.16 -25.67 -0.13 -1.23 16 16 C -0.06 -0.62 0.57 -154.09 -0.09 -0.70 16 17 C 0.05 0.57 4.22 -2.21 -0.01 0.56 16 18 C -0.13 -1.30 4.82 -26.95 -0.13 -1.43 16 19 C 0.06 0.52 6.65 37.28 0.25 0.77 16 20 O -0.39 -4.01 10.75 -35.23 -0.38 -4.39 16 21 C 0.06 0.52 6.67 37.28 0.25 0.77 16 22 C -0.14 -1.26 4.79 -26.94 -0.13 -1.39 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.95 7.20 -51.93 -0.37 0.58 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.03 0.43 7.97 -51.93 -0.41 0.02 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.45 7.67 -51.93 -0.40 0.05 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.54 7.74 -51.93 -0.40 0.14 16 35 H 0.07 0.58 6.34 -51.93 -0.33 0.25 16 36 H 0.09 1.13 7.69 -51.93 -0.40 0.73 16 37 H 0.05 0.57 7.89 -51.93 -0.41 0.16 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.39 6.68 -51.93 -0.35 0.04 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.36 7.63 -51.93 -0.40 -0.03 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.59 8.02 -51.92 -0.42 0.17 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -30.93 342.83 -10.07 -41.00 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -8.50 Total: -4.51 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -0.85 Total: -19.62 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: -0.49 Total: -34.61 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.38 Total: -4.39 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.93 -10.07 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385269624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.422 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds