Wall clock time and date at job start Mon Mar 30 2020 07:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00414 * 2 1 4 4 H 1.48501 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46806 * 299.99677 * 3 2 1 6 6 H 1.48497 * 109.47051 * 59.99454 * 3 2 1 7 7 C 1.37882 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00249 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46983 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46846 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.46891 * 174.86260 * 12 11 10 14 14 C 1.47958 * 111.00122 * 175.70871 * 13 12 11 15 15 C 1.54150 * 107.04288 * 214.29717 * 14 13 12 16 16 C 1.53884 * 104.96122 * 1.65752 * 15 14 13 17 17 C 1.48664 * 111.00635 * 58.18266 * 13 12 11 18 18 C 1.52340 * 110.59898 * 262.87463 * 16 15 14 19 19 C 1.53235 * 109.22950 * 292.03472 * 18 16 15 20 20 O 1.42919 * 109.32217 * 303.65852 * 19 18 16 21 21 C 1.42926 * 114.22982 * 61.76271 * 20 19 18 22 22 C 1.52338 * 110.59491 * 139.66676 * 16 15 14 23 23 H 0.96998 * 119.99769 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47346 * 59.99508 * 9 7 2 25 25 H 1.09001 * 109.46900 * 300.00437 * 9 7 2 26 26 H 1.09000 * 109.47027 * 59.99939 * 10 9 7 27 27 H 1.08997 * 109.46890 * 299.99703 * 10 9 7 28 28 H 1.09000 * 109.47263 * 60.00115 * 11 10 9 29 29 H 1.08997 * 109.47091 * 299.99611 * 11 10 9 30 30 H 1.09000 * 109.46892 * 294.85565 * 12 11 10 31 31 H 1.08996 * 109.47328 * 54.85500 * 12 11 10 32 32 H 1.08997 * 109.92221 * 333.65045 * 14 13 12 33 33 H 1.09002 * 109.92192 * 94.75053 * 14 13 12 34 34 H 1.09001 * 110.33807 * 120.52314 * 15 14 13 35 35 H 1.09000 * 110.34470 * 242.78828 * 15 14 13 36 36 H 1.08994 * 110.67561 * 277.42054 * 17 13 12 37 37 H 1.09003 * 110.66804 * 40.56521 * 17 13 12 38 38 H 1.08996 * 109.50923 * 51.96152 * 18 16 15 39 39 H 1.08995 * 109.50832 * 172.10732 * 18 16 15 40 40 H 1.08991 * 109.49918 * 183.70347 * 19 18 16 41 41 H 1.09005 * 109.52276 * 63.62574 * 19 18 16 42 42 H 1.09003 * 109.49539 * 178.28688 * 21 20 19 43 43 H 1.09002 * 109.52767 * 58.20515 * 21 20 19 44 44 H 1.08999 * 109.51150 * 187.88958 * 22 16 15 45 45 H 1.09008 * 109.50671 * 308.03392 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 6 2.4743 -6.1501 0.0044 13 7 1.7439 -7.4185 0.1290 14 6 2.6647 -8.5725 0.0316 15 6 1.8971 -9.7043 -0.6797 16 6 0.5190 -9.1037 -1.0090 17 6 0.7667 -7.5818 -0.9793 18 6 -0.5036 -9.4967 0.0496 19 6 -0.7695 -11.0031 -0.0401 20 8 -1.1955 -11.3300 -1.3646 21 6 -0.2291 -11.0457 -2.3786 22 6 0.0611 -9.5411 -2.3945 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6040 0.8923 27 1 2.8724 -3.6048 -0.8877 28 1 0.8538 -5.0455 -0.8877 29 1 0.8531 -5.0442 0.8922 30 1 3.0395 -6.1464 -0.9276 31 1 3.1594 -6.0411 0.8451 32 1 3.5444 -8.2976 -0.5503 33 1 2.9650 -8.8933 1.0292 34 1 2.4125 -9.9944 -1.5953 35 1 1.7878 -10.5628 -0.0171 36 1 -0.1568 -7.0459 -0.7603 37 1 1.1949 -7.2432 -1.9228 38 1 -0.1153 -9.2538 1.0387 39 1 -1.4322 -8.9522 -0.1216 40 1 -1.5485 -11.2780 0.6708 41 1 0.1448 -11.5489 0.1930 42 1 -0.6197 -11.3511 -3.3493 43 1 0.6908 -11.5914 -2.1685 44 1 -0.8442 -8.9986 -2.6668 45 1 0.8457 -9.3293 -3.1209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385269624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:56 Heat of formation + Delta-G solvation = -91.493919 kcal Electronic energy + Delta-G solvation = -20783.992350 eV Core-core repulsion = 17799.154291 eV Total energy + Delta-G solvation = -2984.838059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45756 -38.95705 -36.72205 -35.11811 -33.74755 -32.10538 -31.27578 -29.52598 -28.16057 -26.07361 -24.58792 -23.77492 -23.31186 -21.91655 -21.41267 -19.53139 -18.43880 -17.32202 -16.96574 -16.91608 -16.58911 -16.31247 -16.05498 -15.49775 -15.01060 -14.88711 -14.67586 -14.26702 -14.08157 -13.85293 -13.65475 -13.15414 -13.09859 -12.86877 -12.79687 -12.47838 -12.34214 -12.24963 -12.17817 -11.96437 -11.93390 -11.82033 -11.39004 -11.32945 -11.30791 -11.09097 -10.96273 -10.57613 -10.34691 -9.36065 -8.21357 -6.33077 1.38562 1.39205 1.52755 2.39758 2.97463 3.03953 3.11328 3.47732 3.60582 3.73944 4.04517 4.09883 4.12679 4.19873 4.21776 4.31096 4.35540 4.49973 4.52602 4.55936 4.64244 4.68415 4.73832 4.76793 4.83803 4.86765 4.87786 4.95679 4.97434 5.00996 5.13196 5.20295 5.20809 5.25477 5.31770 5.36898 5.40689 5.52779 5.74695 5.84612 5.95739 6.10239 6.24126 6.31104 6.84528 7.36396 8.90829 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038947 B = 0.002993 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.756556 B = 9352.128110 C = 9659.100120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.103 4.103 12 C 0.059 3.941 13 N -0.527 5.527 14 C 0.034 3.966 15 C -0.116 4.116 16 C -0.060 4.060 17 C 0.044 3.956 18 C -0.132 4.132 19 C 0.061 3.939 20 O -0.405 6.405 21 C 0.062 3.938 22 C -0.141 4.141 23 H 0.264 0.736 24 H -0.012 1.012 25 H -0.012 1.012 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 -25.229 -2.923 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.134 4.134 11 C -0.141 4.141 12 C -0.069 4.069 13 N -0.251 5.251 14 C -0.094 4.094 15 C -0.154 4.154 16 C -0.060 4.060 17 C -0.083 4.083 18 C -0.169 4.169 19 C -0.015 4.015 20 O -0.325 6.325 21 C -0.015 4.015 22 C -0.179 4.179 23 H 0.072 0.928 24 H 0.006 0.994 25 H 0.007 0.993 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.814 -25.187 -2.446 25.462 hybrid contribution 0.627 1.593 -0.664 1.836 sum 3.440 -23.594 -3.110 24.046 Atomic orbital electron populations 1.70116 1.07885 1.27730 1.51775 1.26042 0.95815 1.03545 0.94708 0.85364 0.79066 0.78556 0.77849 1.18487 1.20267 1.20279 1.21766 0.93571 0.92470 1.50407 0.92156 1.19011 0.94477 0.93358 0.94495 1.21399 0.97963 0.93589 1.00467 1.21479 0.97998 0.93507 1.01087 1.22203 0.95485 0.88733 1.00497 1.64780 1.14975 1.01911 1.43430 1.22957 0.94615 0.90664 1.01160 1.22501 0.93951 0.97872 1.01055 1.20906 0.95724 0.93757 0.95648 1.23195 0.96471 0.96118 0.92556 1.21943 0.98394 0.97087 0.99521 1.22739 1.00989 0.93901 0.83915 1.87892 1.43221 1.84894 1.16454 1.22710 0.92837 0.93949 0.91990 1.22094 1.02114 0.97665 0.96000 0.92759 0.99388 0.99342 0.92930 0.93165 0.93322 0.92824 0.94605 0.90407 0.93572 0.89886 0.90107 0.89663 0.91563 0.93981 0.90344 0.92506 0.88194 0.91783 0.87893 0.91826 0.91928 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.37 13.29 21.45 0.28 -58.08 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.10 -4.07 5.15 30.59 0.16 -3.92 16 11 C -0.10 -3.65 4.90 30.60 0.15 -3.50 16 12 C 0.06 1.66 4.84 86.31 0.42 2.08 16 13 N -0.53 -13.17 5.32 -883.68 -4.70 -17.87 16 14 C 0.03 0.64 6.71 86.49 0.58 1.22 16 15 C -0.12 -1.76 5.16 31.28 0.16 -1.60 16 16 C -0.06 -1.09 0.57 -51.91 -0.03 -1.12 16 17 C 0.04 1.07 4.22 86.37 0.36 1.43 16 18 C -0.13 -2.47 4.82 30.45 0.15 -2.32 16 19 C 0.06 0.97 6.65 72.06 0.48 1.45 16 20 O -0.41 -7.79 10.75 -148.98 -1.60 -9.39 16 21 C 0.06 0.89 6.67 72.06 0.48 1.37 16 22 C -0.14 -2.28 4.79 30.46 0.15 -2.14 16 23 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 25 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.76 7.20 -2.39 -0.02 1.74 16 29 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 30 H 0.04 0.98 7.97 -2.39 -0.02 0.96 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 0.86 7.67 -2.39 -0.02 0.84 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.03 7.74 -2.39 -0.02 1.02 16 35 H 0.08 1.09 6.34 -2.39 -0.02 1.08 16 36 H 0.07 1.82 7.69 -2.39 -0.02 1.80 16 37 H 0.04 1.03 7.89 -2.39 -0.02 1.01 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 0.83 6.68 -2.38 -0.02 0.81 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 0.74 7.63 -2.39 -0.02 0.72 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.18 8.02 -2.38 -0.02 1.16 16 Total: -1.00 -66.79 342.83 0.82 -65.97 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.92 Total: 9.36 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 3.90 Total: -37.08 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -4.42 Total: -75.95 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -1.60 Total: -9.39 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -66.79 0.82 -65.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385269624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.524 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds