Wall clock time and date at job start Mon Mar 30 2020 08:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46969 * 2 1 4 4 H 1.08997 * 109.47202 * 55.00377 * 3 2 1 5 5 C 1.50704 * 109.46914 * 175.00097 * 3 2 1 6 6 H 1.07997 * 119.99825 * 119.99923 * 5 3 2 7 7 C 1.37872 * 120.00244 * 299.99876 * 5 3 2 8 8 N 1.31522 * 119.99757 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00254 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46855 * 90.00033 * 9 7 5 11 11 H 1.48504 * 109.46979 * 209.99943 * 9 7 5 12 12 H 1.48496 * 109.46868 * 329.99998 * 9 7 5 13 13 N 1.46494 * 109.47129 * 295.00077 * 3 2 1 14 14 C 1.34776 * 120.00110 * 84.99835 * 13 3 2 15 15 O 1.21283 * 120.00100 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00418 * 179.97438 * 14 13 3 17 17 C 1.52992 * 109.47309 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47367 * 299.99848 * 17 16 14 19 19 C 1.53002 * 109.47304 * 300.00596 * 18 17 16 20 20 C 1.52999 * 109.47645 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47317 * 174.99822 * 20 19 18 22 22 C 1.53005 * 109.47392 * 59.99176 * 19 18 17 23 23 C 1.53000 * 109.46991 * 59.99966 * 16 14 13 24 24 H 1.08997 * 109.47427 * 59.99613 * 1 2 3 25 25 H 1.09002 * 109.47214 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47185 * 299.99327 * 1 2 3 27 27 H 1.08999 * 109.47413 * 240.00202 * 2 1 3 28 28 H 1.08997 * 109.47129 * 119.99928 * 2 1 3 29 29 H 0.96998 * 119.99978 * 180.02562 * 8 7 5 30 30 H 0.96999 * 120.00045 * 265.00233 * 13 3 2 31 31 H 1.09001 * 109.47154 * 300.00556 * 16 14 13 32 32 H 1.09007 * 109.47262 * 180.02562 * 17 16 14 33 33 H 1.08992 * 109.47759 * 60.00208 * 17 16 14 34 34 H 1.08993 * 109.47768 * 180.02562 * 18 17 16 35 35 H 1.09007 * 109.46705 * 59.99934 * 18 17 16 36 36 H 1.09006 * 109.46455 * 299.99835 * 19 18 17 37 37 H 1.08996 * 109.46929 * 54.98926 * 20 19 18 38 38 H 1.09002 * 109.46716 * 294.99731 * 20 19 18 39 39 H 1.09002 * 109.47153 * 299.99641 * 21 20 19 40 40 H 1.09001 * 109.46832 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.47261 * 59.99813 * 21 20 19 42 42 H 1.08997 * 109.46584 * 60.00060 * 22 19 18 43 43 H 1.08999 * 109.47123 * 180.02562 * 22 19 18 44 44 H 1.08997 * 109.47159 * 179.97438 * 23 16 14 45 45 H 1.09005 * 109.47284 * 300.00483 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3367 2.1728 9 14 6.0050 0.8813 1.3817 10 1 6.4416 2.1143 2.0848 11 1 6.4396 -0.3097 2.1549 12 1 6.6135 0.8417 0.0277 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6644 -1.3669 15 8 -0.3394 2.6326 -0.4341 16 6 0.0365 3.3386 -2.6544 17 6 -1.3823 3.8953 -2.5206 18 6 -2.3532 2.7510 -2.2225 19 6 -2.3097 1.7344 -3.3652 20 6 -3.2800 0.5897 -3.0668 21 6 -3.3297 -0.3619 -4.2638 22 6 -0.8908 1.1778 -3.4990 23 6 0.0805 2.3223 -3.7972 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0611 2.9498 30 1 2.2718 2.1232 -1.9977 31 1 0.7279 4.1541 -2.8666 32 1 -1.6708 4.3826 -3.4520 33 1 -1.4134 4.6194 -1.7066 34 1 -3.3640 3.1474 -2.1277 35 1 -2.0649 2.2632 -1.2912 36 1 -2.5979 2.2222 -4.2964 37 1 -4.2750 0.9954 -2.8835 38 1 -2.9409 0.0466 -2.1847 39 1 -3.6688 0.1813 -5.1460 40 1 -4.0207 -1.1776 -4.0510 41 1 -2.3347 -0.7675 -4.4471 42 1 -0.6026 0.6902 -2.5677 43 1 -0.8597 0.4539 -4.3133 44 1 -0.2082 2.8099 -4.7283 45 1 1.0915 1.9261 -3.8923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393288921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:52 Heat of formation + Delta-G solvation = -79.857230 kcal Electronic energy + Delta-G solvation = -22265.730590 eV Core-core repulsion = 19281.397136 eV Total energy + Delta-G solvation = -2984.333455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.09917 -37.42135 -35.03544 -33.71287 -32.36587 -31.00469 -30.35381 -28.92484 -26.90872 -24.12540 -23.05760 -22.44576 -21.46429 -20.06086 -19.58864 -18.90025 -16.70299 -15.87054 -15.49930 -15.10656 -14.62238 -14.52417 -14.16708 -13.79054 -13.41218 -13.10602 -13.05160 -12.67854 -12.40350 -12.07950 -11.94507 -11.70758 -11.50897 -11.31626 -11.20213 -11.14927 -10.95135 -10.84529 -10.80085 -10.67929 -10.38647 -10.28308 -10.00106 -9.81765 -9.73125 -9.48170 -9.01108 -8.63817 -8.43840 -7.72090 -6.10133 -4.19255 3.25160 3.32026 3.33660 3.53165 4.18200 4.41952 4.81441 4.88641 4.96066 5.17845 5.21177 5.24800 5.36960 5.46175 5.60214 5.69376 5.72464 5.74615 5.77279 5.85412 5.99663 6.03900 6.07697 6.16914 6.25669 6.31272 6.34549 6.41687 6.43656 6.51234 6.58795 6.61064 6.71678 6.91223 7.13214 7.25723 7.43541 7.55451 7.65852 7.78972 7.95116 8.22569 8.76142 8.83014 9.25385 9.49142 10.95074 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028231 B = 0.005230 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.573629 B = 5352.616814 C = 5655.820788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.047 0.953 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.509 3.491 15 O -0.546 6.546 16 C -0.114 4.114 17 C -0.092 4.092 18 C -0.129 4.129 19 C -0.083 4.083 20 C -0.120 4.120 21 C -0.152 4.152 22 C -0.125 4.125 23 C -0.107 4.107 24 H 0.049 0.951 25 H 0.020 0.980 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.097 0.903 29 H 0.264 0.736 30 H 0.386 0.614 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 2.192 -12.549 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.294 3.706 15 O -0.425 6.425 16 C -0.135 4.135 17 C -0.130 4.130 18 C -0.166 4.166 19 C -0.101 4.101 20 C -0.158 4.158 21 C -0.209 4.209 22 C -0.162 4.162 23 C -0.145 4.145 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.218 0.782 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.475 2.051 -11.668 15.170 hybrid contribution 1.402 -0.011 -0.276 1.429 sum -8.073 2.039 -11.943 14.559 Atomic orbital electron populations 1.21971 0.98436 0.97959 1.01611 1.21905 0.92597 0.99888 1.02068 1.18731 0.93998 0.89133 0.81259 0.93478 1.21252 0.90911 1.38805 1.06174 0.92225 1.24879 0.98471 0.94857 0.95447 1.69900 1.35048 1.37727 1.09332 0.86486 0.85063 0.77614 0.78156 1.20612 1.21107 1.19891 1.46505 1.14823 1.56133 1.18248 1.20259 0.82450 0.79073 0.88836 1.90577 1.51003 1.60199 1.40743 1.21400 0.98821 0.98695 0.94618 1.21231 0.93009 0.97961 1.00786 1.21859 0.98074 0.96125 1.00573 1.21147 0.94735 0.95655 0.98558 1.21558 0.99107 0.96626 0.98480 1.21816 1.01683 0.99188 0.98245 1.21803 0.94422 0.97430 1.02561 1.21490 0.99945 0.96057 0.96970 0.93240 0.96129 0.93272 0.95224 0.88508 0.92637 0.78206 0.89569 0.92507 0.91664 0.93090 0.88275 0.92134 0.92413 0.91790 0.93156 0.93210 0.92487 0.90633 0.92112 0.91678 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.15 0.32 -2.81 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.75 11.29 55.43 0.63 -24.12 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.71 -14.38 4.91 -54.93 -0.27 -14.65 16 14 C 0.51 9.64 4.48 -10.99 -0.05 9.59 16 15 O -0.55 -12.03 10.80 5.56 0.06 -11.97 16 16 C -0.11 -1.63 3.01 -91.78 -0.28 -1.91 16 17 C -0.09 -1.26 5.09 -26.74 -0.14 -1.39 16 18 C -0.13 -1.83 4.91 -26.73 -0.13 -1.96 16 19 C -0.08 -1.03 2.19 -90.62 -0.20 -1.23 16 20 C -0.12 -1.43 5.40 -26.73 -0.14 -1.57 16 21 C -0.15 -1.57 9.67 37.16 0.36 -1.21 16 22 C -0.13 -1.66 4.74 -26.70 -0.13 -1.79 16 23 C -0.11 -1.33 5.36 -26.71 -0.14 -1.47 16 24 H 0.05 1.02 3.22 -51.93 -0.17 0.85 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 6.96 7.96 -40.82 -0.32 6.63 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 1.75 5.51 -51.93 -0.29 1.46 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 42 H 0.08 1.22 4.84 -51.93 -0.25 0.97 16 43 H 0.06 0.73 6.56 -51.93 -0.34 0.39 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.81 7.56 -51.93 -0.39 0.41 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -28.34 330.23 -8.68 -37.02 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.83 Total: 8.14 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.23 Total: -14.99 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.36 Total: -38.77 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.06 Total: -11.97 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.34 -8.68 -37.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393288921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.834 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds