Wall clock time and date at job start Mon Mar 30 2020 08:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46969 * 2 1 4 4 H 1.08997 * 109.47202 * 55.00377 * 3 2 1 5 5 C 1.50704 * 109.46914 * 175.00097 * 3 2 1 6 6 H 1.07997 * 119.99825 * 119.99923 * 5 3 2 7 7 C 1.37872 * 120.00244 * 299.99876 * 5 3 2 8 8 N 1.31522 * 119.99757 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00254 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46855 * 90.00033 * 9 7 5 11 11 H 1.48504 * 109.46979 * 209.99943 * 9 7 5 12 12 H 1.48496 * 109.46868 * 329.99998 * 9 7 5 13 13 N 1.46494 * 109.47129 * 295.00077 * 3 2 1 14 14 C 1.34776 * 120.00110 * 84.99835 * 13 3 2 15 15 O 1.21283 * 120.00100 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00418 * 179.97438 * 14 13 3 17 17 C 1.52992 * 109.47309 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47367 * 299.99848 * 17 16 14 19 19 C 1.53002 * 109.47304 * 300.00596 * 18 17 16 20 20 C 1.52999 * 109.47645 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47317 * 174.99822 * 20 19 18 22 22 C 1.53005 * 109.47392 * 59.99176 * 19 18 17 23 23 C 1.53000 * 109.46991 * 59.99966 * 16 14 13 24 24 H 1.08997 * 109.47427 * 59.99613 * 1 2 3 25 25 H 1.09002 * 109.47214 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47185 * 299.99327 * 1 2 3 27 27 H 1.08999 * 109.47413 * 240.00202 * 2 1 3 28 28 H 1.08997 * 109.47129 * 119.99928 * 2 1 3 29 29 H 0.96998 * 119.99978 * 180.02562 * 8 7 5 30 30 H 0.96999 * 120.00045 * 265.00233 * 13 3 2 31 31 H 1.09001 * 109.47154 * 300.00556 * 16 14 13 32 32 H 1.09007 * 109.47262 * 180.02562 * 17 16 14 33 33 H 1.08992 * 109.47759 * 60.00208 * 17 16 14 34 34 H 1.08993 * 109.47768 * 180.02562 * 18 17 16 35 35 H 1.09007 * 109.46705 * 59.99934 * 18 17 16 36 36 H 1.09006 * 109.46455 * 299.99835 * 19 18 17 37 37 H 1.08996 * 109.46929 * 54.98926 * 20 19 18 38 38 H 1.09002 * 109.46716 * 294.99731 * 20 19 18 39 39 H 1.09002 * 109.47153 * 299.99641 * 21 20 19 40 40 H 1.09001 * 109.46832 * 179.97438 * 21 20 19 41 41 H 1.09004 * 109.47261 * 59.99813 * 21 20 19 42 42 H 1.08997 * 109.46584 * 60.00060 * 22 19 18 43 43 H 1.08999 * 109.47123 * 180.02562 * 22 19 18 44 44 H 1.08997 * 109.47159 * 179.97438 * 23 16 14 45 45 H 1.09005 * 109.47284 * 300.00483 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3367 2.1728 9 14 6.0050 0.8813 1.3817 10 1 6.4416 2.1143 2.0848 11 1 6.4396 -0.3097 2.1549 12 1 6.6135 0.8417 0.0277 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6644 -1.3669 15 8 -0.3394 2.6326 -0.4341 16 6 0.0365 3.3386 -2.6544 17 6 -1.3823 3.8953 -2.5206 18 6 -2.3532 2.7510 -2.2225 19 6 -2.3097 1.7344 -3.3652 20 6 -3.2800 0.5897 -3.0668 21 6 -3.3297 -0.3619 -4.2638 22 6 -0.8908 1.1778 -3.4990 23 6 0.0805 2.3223 -3.7972 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0611 2.9498 30 1 2.2718 2.1232 -1.9977 31 1 0.7279 4.1541 -2.8666 32 1 -1.6708 4.3826 -3.4520 33 1 -1.4134 4.6194 -1.7066 34 1 -3.3640 3.1474 -2.1277 35 1 -2.0649 2.2632 -1.2912 36 1 -2.5979 2.2222 -4.2964 37 1 -4.2750 0.9954 -2.8835 38 1 -2.9409 0.0466 -2.1847 39 1 -3.6688 0.1813 -5.1460 40 1 -4.0207 -1.1776 -4.0510 41 1 -2.3347 -0.7675 -4.4471 42 1 -0.6026 0.6902 -2.5677 43 1 -0.8597 0.4539 -4.3133 44 1 -0.2082 2.8099 -4.7283 45 1 1.0915 1.9261 -3.8923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393288921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:51 Heat of formation + Delta-G solvation = -95.684815 kcal Electronic energy + Delta-G solvation = -22266.416926 eV Core-core repulsion = 19281.397136 eV Total energy + Delta-G solvation = -2985.019790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.46461 -38.75881 -36.82323 -34.84120 -34.23266 -32.75454 -31.51128 -30.01370 -28.81876 -25.47111 -24.70186 -23.54503 -22.79999 -21.45206 -21.06794 -20.43389 -18.48458 -17.33397 -17.06590 -16.73304 -16.02457 -15.89067 -15.49824 -15.03116 -14.62084 -14.49205 -14.43997 -14.23328 -13.64316 -13.43178 -13.34384 -13.19723 -12.98799 -12.87224 -12.75175 -12.69144 -12.33173 -12.20789 -12.15286 -12.02983 -11.85355 -11.74477 -11.52967 -11.19179 -11.03382 -10.82010 -10.74994 -10.53453 -10.11579 -9.49617 -8.15104 -6.32396 1.44136 1.44250 1.54985 2.03428 2.37928 2.78764 3.14205 3.78175 3.83498 3.90451 4.09700 4.24458 4.38435 4.44789 4.49616 4.52690 4.58867 4.62423 4.72158 4.74463 4.81731 4.83607 4.85656 5.02152 5.07031 5.08219 5.15514 5.19154 5.27665 5.31272 5.34647 5.39764 5.42502 5.49165 5.52512 5.59261 5.60493 5.68252 5.83699 5.88606 5.99498 6.21616 6.77539 7.13159 7.36024 7.74670 8.90043 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028231 B = 0.005230 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.573629 B = 5352.616814 C = 5655.820788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.117 4.117 3 C 0.281 3.719 4 H -0.007 1.007 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.260 1.260 13 N -0.709 5.709 14 C 0.503 3.497 15 O -0.581 6.581 16 C -0.106 4.106 17 C -0.091 4.091 18 C -0.129 4.129 19 C -0.076 4.076 20 C -0.121 4.121 21 C -0.148 4.148 22 C -0.126 4.126 23 C -0.103 4.103 24 H 0.063 0.937 25 H 0.037 0.963 26 H 0.020 0.980 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.264 0.736 30 H 0.399 0.601 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 2.824 -15.829 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.156 4.156 3 C 0.177 3.823 4 H 0.011 0.989 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.184 1.184 13 N -0.358 5.358 14 C 0.291 3.709 15 O -0.462 6.462 16 C -0.127 4.127 17 C -0.128 4.128 18 C -0.167 4.167 19 C -0.094 4.094 20 C -0.159 4.159 21 C -0.205 4.205 22 C -0.163 4.163 23 C -0.140 4.140 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.234 0.766 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.118 0.882 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.185 2.695 -14.985 17.781 hybrid contribution 1.229 -0.187 0.788 1.472 sum -7.956 2.509 -14.196 16.466 Atomic orbital electron populations 1.21825 0.97033 0.98794 1.00970 1.21728 0.93731 0.99299 1.00819 1.18262 0.93327 0.89013 0.81704 0.98874 1.21611 0.91692 1.38652 1.06552 0.91201 1.25768 1.03213 0.94430 0.95087 1.70063 1.37016 1.38529 1.09874 0.85402 0.79296 0.77374 0.78602 1.20472 1.21042 1.18401 1.46286 1.15914 1.56454 1.17102 1.21209 0.81246 0.78199 0.90267 1.90585 1.51800 1.61199 1.42651 1.21449 0.99634 0.99384 0.92231 1.21267 0.92337 0.97372 1.01870 1.21794 0.98662 0.96716 0.99516 1.21120 0.94404 0.95254 0.98654 1.21554 0.99242 0.96782 0.98292 1.21781 1.01749 0.99060 0.97909 1.21796 0.95117 0.98091 1.01271 1.21534 1.00058 0.95216 0.97222 0.91819 0.94417 0.96065 0.94405 0.91529 0.92725 0.76638 0.87396 0.88900 0.93468 0.92227 0.92472 0.89575 0.91796 0.94455 0.91513 0.92767 0.92786 0.94309 0.90406 0.88188 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 8.51 71.98 0.61 -5.32 16 2 C -0.12 -5.84 5.45 30.59 0.17 -5.68 16 3 C 0.28 14.49 2.24 44.25 0.10 14.59 16 4 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 5 C -0.55 -29.16 8.73 25.60 0.22 -28.94 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.01 0.81 5.29 84.65 0.45 1.26 16 8 N -0.92 -53.18 11.29 21.45 0.24 -52.94 16 9 Si 0.97 42.42 29.54 68.60 2.03 44.44 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 13 N -0.71 -28.98 4.91 -446.10 -2.19 -31.18 16 14 C 0.50 19.20 4.48 87.66 0.39 19.59 16 15 O -0.58 -26.82 10.80 -3.04 -0.03 -26.85 16 16 C -0.11 -2.80 3.01 -11.54 -0.03 -2.83 16 17 C -0.09 -2.28 5.09 30.59 0.16 -2.12 16 18 C -0.13 -3.55 4.91 30.59 0.15 -3.40 16 19 C -0.08 -1.71 2.19 -10.79 -0.02 -1.73 16 20 C -0.12 -2.72 5.40 30.59 0.17 -2.55 16 21 C -0.15 -2.68 9.67 71.98 0.70 -1.99 16 22 C -0.13 -3.04 4.74 30.61 0.15 -2.90 16 23 C -0.10 -2.19 5.36 30.61 0.16 -2.03 16 24 H 0.06 2.75 3.22 -2.39 -0.01 2.74 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 26 H 0.02 1.04 7.85 -2.39 -0.02 1.02 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 3.76 5.95 -2.39 -0.01 3.74 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.40 14.04 7.96 -92.71 -0.74 13.30 16 31 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 2.08 5.51 -2.38 -0.01 2.07 16 36 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 1.01 6.56 -2.38 -0.02 0.99 16 42 H 0.04 1.23 4.84 -2.39 -0.01 1.22 16 43 H 0.08 1.62 6.56 -2.39 -0.02 1.61 16 44 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.46 7.56 -2.38 -0.02 1.44 16 Total: -1.00 -64.87 330.23 3.63 -61.24 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.22 Total: 29.33 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 3.36 Total: -24.04 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -1.95 Total: -84.12 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.03 Total: -26.85 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -64.87 3.63 -61.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393288921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.446 kcal (2) G-P(sol) polarization free energy of solvation -64.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds