Wall clock time and date at job start Mon Mar 30 2020 07:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 110.01376 * 2 1 4 4 C 1.54267 * 110.02971 * 238.61012 * 2 1 3 5 5 C 1.54888 * 104.19245 * 217.10367 * 4 2 1 6 6 C 1.54889 * 102.75011 * 37.94274 * 5 4 2 7 7 C 1.54217 * 110.02511 * 121.40028 * 2 1 3 8 8 C 1.52998 * 110.08701 * 238.49768 * 7 2 1 9 9 N 1.46899 * 110.14440 * 0.03957 * 7 2 1 10 10 C 1.46845 * 111.00068 * 157.53002 * 9 7 2 11 11 C 1.53041 * 109.52318 * 185.83559 * 10 9 7 12 12 C 1.53111 * 109.27931 * 300.82102 * 11 10 9 13 13 C 1.50702 * 109.57563 * 177.59173 * 12 11 10 14 14 H 1.08000 * 120.00014 * 245.91880 * 13 12 11 15 15 C 1.37879 * 120.00201 * 65.91944 * 13 12 11 16 16 N 1.31508 * 119.99557 * 4.69150 * 15 13 12 17 17 Si 1.86794 * 120.00129 * 184.69059 * 15 13 12 18 18 H 1.48493 * 109.47178 * 94.81281 * 17 15 13 19 19 H 1.48503 * 109.46987 * 214.81493 * 17 15 13 20 20 H 1.48503 * 109.46915 * 334.81249 * 17 15 13 21 21 C 1.53123 * 109.16225 * 57.65107 * 12 11 10 22 22 C 1.46852 * 110.99933 * 281.73755 * 9 7 2 23 23 H 1.09004 * 109.47158 * 194.68686 * 1 2 3 24 24 H 1.08997 * 109.47300 * 314.68325 * 1 2 3 25 25 H 1.09003 * 109.47288 * 74.68509 * 1 2 3 26 26 H 0.96696 * 114.00313 * 300.05796 * 3 2 1 27 27 H 1.09001 * 110.49007 * 98.42664 * 4 2 1 28 28 H 1.09006 * 110.48427 * 335.78053 * 4 2 1 29 29 H 1.08999 * 110.75788 * 279.62558 * 5 4 2 30 30 H 1.09006 * 110.91393 * 156.33248 * 5 4 2 31 31 H 1.09002 * 110.48600 * 80.73573 * 6 5 4 32 32 H 1.09000 * 110.48575 * 203.24528 * 6 5 4 33 33 H 1.09004 * 109.47077 * 301.55400 * 8 7 2 34 34 H 1.08998 * 109.46999 * 61.55381 * 8 7 2 35 35 H 1.09003 * 109.46808 * 181.56005 * 8 7 2 36 36 H 1.09002 * 109.46373 * 305.84965 * 10 9 7 37 37 H 1.08996 * 109.46641 * 65.82313 * 10 9 7 38 38 H 1.09003 * 109.50156 * 180.87800 * 11 10 9 39 39 H 1.09001 * 109.53193 * 60.77957 * 11 10 9 40 40 H 1.09000 * 109.52421 * 297.74910 * 12 11 10 41 41 H 0.97009 * 120.00066 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.50003 * 182.40314 * 21 12 11 43 43 H 1.09004 * 109.53026 * 62.30753 * 21 12 11 44 44 H 1.09002 * 109.46212 * 294.17951 * 22 9 7 45 45 H 1.09003 * 109.45966 * 54.15616 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0191 1.3427 0.0000 4 6 2.0584 -0.7549 -1.2372 5 6 3.3136 -1.5004 -0.7198 6 6 2.8875 -1.9409 0.7026 7 6 2.0581 -0.7549 1.2367 8 6 2.9435 0.1675 2.0770 9 7 0.9356 -1.2494 2.0450 10 6 1.3510 -2.3778 2.8879 11 6 0.1292 -2.9583 3.6039 12 6 -0.5195 -1.8683 4.4613 13 6 -1.7574 -2.4164 5.1232 14 1 -2.7292 -2.0269 4.8579 15 6 -1.6496 -3.4153 6.0675 16 7 -0.4627 -3.8255 6.4580 17 14 -3.1892 -4.1859 6.7920 18 1 -3.5282 -5.4186 6.0366 19 1 -2.9477 -4.5289 8.2165 20 1 -4.3157 -3.2227 6.6988 21 6 -0.8987 -0.6846 3.5671 22 6 0.3527 -0.1700 2.8523 23 1 -0.3634 -0.9941 0.2606 24 1 -0.3634 0.7226 0.7306 25 1 -0.3634 0.2714 -0.9912 26 1 1.7380 1.8637 -0.7646 27 1 2.3297 -0.0527 -2.0256 28 1 1.3141 -1.4653 -1.5973 29 1 4.1710 -0.8287 -0.6756 30 1 3.5356 -2.3672 -1.3424 31 1 2.2772 -2.8429 0.6558 32 1 3.7638 -2.1065 1.3293 33 1 3.7730 0.5281 1.4687 34 1 2.3550 1.0152 2.4280 35 1 3.3333 -0.3836 2.9328 36 1 1.8069 -3.1477 2.2654 37 1 2.0745 -2.0326 3.6264 38 1 0.4403 -3.7860 4.2414 39 1 -0.5890 -3.3169 2.8665 40 1 0.1852 -1.5373 5.2242 41 1 -0.3867 -4.5285 7.1221 42 1 -1.3223 0.1123 4.1785 43 1 -1.6332 -1.0063 2.8287 44 1 1.0810 0.1650 3.5909 45 1 0.0834 0.6636 2.2037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397164128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:34 Heat of formation + Delta-G solvation = -50.411666 kcal Electronic energy + Delta-G solvation = -22612.840636 eV Core-core repulsion = 19629.784037 eV Total energy + Delta-G solvation = -2983.056599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.37223 -37.28754 -35.00832 -33.40488 -31.42264 -30.84265 -29.59907 -28.49285 -26.16466 -25.38751 -23.79913 -22.24082 -21.59917 -20.40511 -18.91827 -17.94143 -16.50575 -16.07572 -15.80187 -15.64746 -14.60571 -14.22772 -14.10926 -13.57086 -13.34319 -12.95737 -12.73452 -12.69838 -12.59883 -12.05153 -12.01528 -11.86494 -11.57897 -11.21036 -11.20107 -10.91363 -10.84688 -10.71729 -10.62019 -10.54509 -10.29625 -10.18059 -10.06732 -9.93697 -9.69669 -9.35871 -8.77242 -8.64771 -8.26237 -7.59096 -5.95070 -3.97561 3.33527 3.40627 3.43948 4.11571 4.48203 4.50390 4.58649 4.87860 4.99030 5.32116 5.35272 5.37235 5.45807 5.60097 5.64149 5.76599 5.84281 5.87017 5.89211 5.98278 6.03679 6.06597 6.11598 6.14671 6.23830 6.26267 6.36125 6.37440 6.52291 6.58819 6.65495 6.70909 6.78111 6.92570 7.13300 7.21515 7.45837 7.66159 7.76170 7.83882 7.89640 8.09137 8.13062 8.52946 9.07058 9.66092 11.13511 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034950 B = 0.005107 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.952289 B = 5481.574475 C = 5700.434485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.138 3.862 3 O -0.558 6.558 4 C -0.144 4.144 5 C -0.120 4.120 6 C -0.119 4.119 7 C 0.118 3.882 8 C -0.155 4.155 9 N -0.517 5.517 10 C 0.052 3.948 11 C -0.098 4.098 12 C 0.047 3.953 13 C -0.509 4.509 14 H 0.053 0.947 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.106 4.106 22 C 0.050 3.950 23 H 0.093 0.907 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.368 0.632 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.023 0.977 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.025 0.975 41 H 0.258 0.742 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.027 0.973 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 6.336 -14.395 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.097 3.903 3 O -0.363 6.363 4 C -0.182 4.182 5 C -0.158 4.158 6 C -0.157 4.157 7 C 0.028 3.972 8 C -0.214 4.214 9 N -0.242 5.242 10 C -0.075 4.075 11 C -0.137 4.137 12 C 0.029 3.971 13 C -0.548 4.548 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.144 4.144 22 C -0.077 4.077 23 H 0.111 0.889 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.214 0.786 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.579 5.832 -14.001 16.532 hybrid contribution -0.410 -0.030 0.505 0.651 sum 6.169 5.802 -13.496 15.933 Atomic orbital electron populations 1.22588 0.94758 1.05352 1.00106 1.21788 0.93195 0.81460 0.93833 1.86591 1.76796 1.23883 1.49061 1.23014 0.98105 0.99806 0.97288 1.22399 0.97448 0.99543 0.96366 1.22638 0.99097 0.98162 0.95804 1.21574 0.89947 0.93181 0.92492 1.22116 1.00091 0.99910 0.99269 1.62288 1.27958 1.08630 1.25295 1.22360 0.98767 0.92274 0.94144 1.21585 0.94081 1.00653 0.97335 1.18679 0.95837 0.90355 0.92237 1.21213 0.92978 1.19292 1.21293 0.92841 1.24963 0.95627 0.97043 0.96312 1.69944 1.22087 1.29487 1.31588 0.86665 0.83849 0.79700 0.78288 1.20813 1.21402 1.19974 1.21680 0.95231 0.99271 0.98173 1.22405 0.97034 0.93241 0.95023 0.88870 0.91509 0.94322 0.78598 0.91716 0.90710 0.91677 0.91719 0.89954 0.91556 0.92421 0.91860 0.93433 0.92029 0.95885 0.90498 0.93788 0.95687 0.93196 0.93366 0.92764 0.95484 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 7.47 37.16 0.28 -1.98 16 2 C 0.14 1.77 1.20 -89.32 -0.11 1.66 16 3 O -0.56 -6.84 11.15 -35.23 -0.39 -7.23 16 4 C -0.14 -1.58 6.06 -25.07 -0.15 -1.73 16 5 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 16 6 C -0.12 -1.59 4.64 -25.07 -0.12 -1.70 16 7 C 0.12 1.74 0.59 -130.31 -0.08 1.66 16 8 C -0.16 -2.36 6.42 37.16 0.24 -2.12 16 9 N -0.52 -8.91 2.81 -217.53 -0.61 -9.52 16 10 C 0.05 0.99 4.81 -3.83 -0.02 0.97 16 11 C -0.10 -2.28 5.19 -26.65 -0.14 -2.42 16 12 C 0.05 1.19 2.03 -91.65 -0.19 1.00 16 13 C -0.51 -14.08 8.49 -34.44 -0.29 -14.38 16 14 H 0.05 1.47 7.75 -52.49 -0.41 1.06 16 15 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 16 N -0.89 -25.78 11.99 55.43 0.66 -25.12 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.11 -2.24 5.32 -26.65 -0.14 -2.38 16 22 C 0.05 0.92 3.69 -3.84 -0.01 0.90 16 23 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 24 H 0.07 0.95 5.57 -51.93 -0.29 0.66 16 25 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 26 H 0.37 3.07 9.05 45.56 0.41 3.48 16 27 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 28 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.15 6.44 -51.93 -0.33 0.82 16 32 H 0.07 0.87 7.84 -51.93 -0.41 0.46 16 33 H 0.06 0.83 7.81 -51.93 -0.41 0.42 16 34 H 0.06 1.02 6.32 -51.93 -0.33 0.69 16 35 H 0.05 0.75 7.37 -51.93 -0.38 0.37 16 36 H 0.06 1.08 5.63 -51.93 -0.29 0.79 16 37 H 0.02 0.47 7.40 -51.93 -0.38 0.08 16 38 H 0.08 1.99 6.82 -51.93 -0.35 1.64 16 39 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.03 0.52 6.68 -51.93 -0.35 0.18 16 45 H 0.07 1.15 5.04 -51.93 -0.26 0.89 16 LS Contribution 322.79 15.07 4.86 4.86 Total: -1.00 -28.77 322.79 -8.55 -37.32 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.06 Total: 3.59 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -0.99 Total: -20.38 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.05 Total: -34.63 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.39 Total: -7.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.77 -8.55 -37.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.087 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds