Wall clock time and date at job start Mon Mar 30 2020 07:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 110.01376 * 2 1 4 4 C 1.54267 * 110.02971 * 238.61012 * 2 1 3 5 5 C 1.54888 * 104.19245 * 217.10367 * 4 2 1 6 6 C 1.54889 * 102.75011 * 37.94274 * 5 4 2 7 7 C 1.54217 * 110.02511 * 121.40028 * 2 1 3 8 8 C 1.52998 * 110.08701 * 238.49768 * 7 2 1 9 9 N 1.46899 * 110.14440 * 0.03957 * 7 2 1 10 10 C 1.46845 * 111.00068 * 157.53002 * 9 7 2 11 11 C 1.53041 * 109.52318 * 185.83559 * 10 9 7 12 12 C 1.53111 * 109.27931 * 300.82102 * 11 10 9 13 13 C 1.50702 * 109.57563 * 177.59173 * 12 11 10 14 14 H 1.08000 * 120.00014 * 245.91880 * 13 12 11 15 15 C 1.37879 * 120.00201 * 65.91944 * 13 12 11 16 16 N 1.31508 * 119.99557 * 4.69150 * 15 13 12 17 17 Si 1.86794 * 120.00129 * 184.69059 * 15 13 12 18 18 H 1.48493 * 109.47178 * 94.81281 * 17 15 13 19 19 H 1.48503 * 109.46987 * 214.81493 * 17 15 13 20 20 H 1.48503 * 109.46915 * 334.81249 * 17 15 13 21 21 C 1.53123 * 109.16225 * 57.65107 * 12 11 10 22 22 C 1.46852 * 110.99933 * 281.73755 * 9 7 2 23 23 H 1.09004 * 109.47158 * 194.68686 * 1 2 3 24 24 H 1.08997 * 109.47300 * 314.68325 * 1 2 3 25 25 H 1.09003 * 109.47288 * 74.68509 * 1 2 3 26 26 H 0.96696 * 114.00313 * 300.05796 * 3 2 1 27 27 H 1.09001 * 110.49007 * 98.42664 * 4 2 1 28 28 H 1.09006 * 110.48427 * 335.78053 * 4 2 1 29 29 H 1.08999 * 110.75788 * 279.62558 * 5 4 2 30 30 H 1.09006 * 110.91393 * 156.33248 * 5 4 2 31 31 H 1.09002 * 110.48600 * 80.73573 * 6 5 4 32 32 H 1.09000 * 110.48575 * 203.24528 * 6 5 4 33 33 H 1.09004 * 109.47077 * 301.55400 * 8 7 2 34 34 H 1.08998 * 109.46999 * 61.55381 * 8 7 2 35 35 H 1.09003 * 109.46808 * 181.56005 * 8 7 2 36 36 H 1.09002 * 109.46373 * 305.84965 * 10 9 7 37 37 H 1.08996 * 109.46641 * 65.82313 * 10 9 7 38 38 H 1.09003 * 109.50156 * 180.87800 * 11 10 9 39 39 H 1.09001 * 109.53193 * 60.77957 * 11 10 9 40 40 H 1.09000 * 109.52421 * 297.74910 * 12 11 10 41 41 H 0.97009 * 120.00066 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.50003 * 182.40314 * 21 12 11 43 43 H 1.09004 * 109.53026 * 62.30753 * 21 12 11 44 44 H 1.09002 * 109.46212 * 294.17951 * 22 9 7 45 45 H 1.09003 * 109.45966 * 54.15616 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0191 1.3427 0.0000 4 6 2.0584 -0.7549 -1.2372 5 6 3.3136 -1.5004 -0.7198 6 6 2.8875 -1.9409 0.7026 7 6 2.0581 -0.7549 1.2367 8 6 2.9435 0.1675 2.0770 9 7 0.9356 -1.2494 2.0450 10 6 1.3510 -2.3778 2.8879 11 6 0.1292 -2.9583 3.6039 12 6 -0.5195 -1.8683 4.4613 13 6 -1.7574 -2.4164 5.1232 14 1 -2.7292 -2.0269 4.8579 15 6 -1.6496 -3.4153 6.0675 16 7 -0.4627 -3.8255 6.4580 17 14 -3.1892 -4.1859 6.7920 18 1 -3.5282 -5.4186 6.0366 19 1 -2.9477 -4.5289 8.2165 20 1 -4.3157 -3.2227 6.6988 21 6 -0.8987 -0.6846 3.5671 22 6 0.3527 -0.1700 2.8523 23 1 -0.3634 -0.9941 0.2606 24 1 -0.3634 0.7226 0.7306 25 1 -0.3634 0.2714 -0.9912 26 1 1.7380 1.8637 -0.7646 27 1 2.3297 -0.0527 -2.0256 28 1 1.3141 -1.4653 -1.5973 29 1 4.1710 -0.8287 -0.6756 30 1 3.5356 -2.3672 -1.3424 31 1 2.2772 -2.8429 0.6558 32 1 3.7638 -2.1065 1.3293 33 1 3.7730 0.5281 1.4687 34 1 2.3550 1.0152 2.4280 35 1 3.3333 -0.3836 2.9328 36 1 1.8069 -3.1477 2.2654 37 1 2.0745 -2.0326 3.6264 38 1 0.4403 -3.7860 4.2414 39 1 -0.5890 -3.3169 2.8665 40 1 0.1852 -1.5373 5.2242 41 1 -0.3867 -4.5285 7.1221 42 1 -1.3223 0.1123 4.1785 43 1 -1.6332 -1.0063 2.8287 44 1 1.0810 0.1650 3.5909 45 1 0.0834 0.6636 2.2037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397164128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:33 Heat of formation + Delta-G solvation = -68.193440 kcal Electronic energy + Delta-G solvation = -22613.611712 eV Core-core repulsion = 19629.784037 eV Total energy + Delta-G solvation = -2983.827675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.57573 -38.72048 -36.24127 -35.01399 -33.14668 -32.17849 -30.99979 -29.93636 -27.52003 -26.94243 -25.12274 -23.81340 -23.18231 -21.47838 -20.53250 -19.34520 -18.46219 -17.25628 -16.95793 -16.71204 -16.54258 -15.67991 -15.46778 -14.91216 -14.65788 -14.48192 -14.33809 -14.07659 -13.85363 -13.57815 -13.33256 -13.13693 -12.97741 -12.85705 -12.67220 -12.47163 -12.25290 -12.10586 -12.05574 -11.82793 -11.80930 -11.57951 -11.54775 -11.39810 -11.14412 -10.73859 -10.60750 -10.50954 -10.36575 -9.04566 -8.10035 -6.20422 1.40449 1.41346 1.51750 2.44118 2.89694 3.19591 3.45246 3.56332 3.86743 4.00680 4.19146 4.27666 4.33894 4.36450 4.39064 4.47788 4.56828 4.58598 4.67761 4.77792 4.80542 4.87048 4.91716 4.94242 4.99481 5.02108 5.05257 5.12403 5.18283 5.22250 5.25436 5.28581 5.37956 5.44369 5.48930 5.56456 5.62568 5.68771 6.00167 6.01310 6.32540 6.39876 6.43294 6.92163 7.05734 7.46868 8.97676 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034950 B = 0.005107 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.952289 B = 5481.574475 C = 5700.434485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 O -0.569 6.569 4 C -0.138 4.138 5 C -0.113 4.113 6 C -0.122 4.122 7 C 0.109 3.891 8 C -0.148 4.148 9 N -0.512 5.512 10 C 0.064 3.936 11 C -0.087 4.087 12 C 0.045 3.955 13 C -0.531 4.531 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.921 5.921 17 Si 0.952 3.048 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.268 1.268 21 C -0.097 4.097 22 C 0.061 3.939 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.387 0.613 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.083 0.917 37 H 0.006 0.994 38 H 0.044 0.956 39 H 0.038 0.962 40 H -0.015 1.015 41 H 0.259 0.741 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.013 0.987 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 6.859 -16.746 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.101 3.899 3 O -0.377 6.377 4 C -0.176 4.176 5 C -0.151 4.151 6 C -0.160 4.160 7 C 0.020 3.980 8 C -0.206 4.206 9 N -0.236 5.236 10 C -0.063 4.063 11 C -0.126 4.126 12 C 0.027 3.973 13 C -0.569 4.569 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.778 3.222 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.135 4.135 22 C -0.066 4.066 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.236 0.764 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.025 0.975 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.004 0.996 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.031 0.969 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.553 6.375 -16.377 18.756 hybrid contribution -0.387 -0.144 1.248 1.314 sum 6.166 6.230 -15.129 17.485 Atomic orbital electron populations 1.22512 0.95157 1.03620 1.01137 1.21658 0.92753 0.81985 0.93468 1.86546 1.76838 1.23701 1.50582 1.22990 0.97848 1.00017 0.96771 1.22385 0.97662 1.00318 0.94711 1.22643 0.98634 0.97159 0.97542 1.21796 0.89172 0.94193 0.92888 1.22034 1.00322 0.99322 0.98945 1.62274 1.29330 1.07794 1.24242 1.22126 0.96375 0.93636 0.94172 1.21341 0.95417 0.99215 0.96610 1.18637 0.94283 0.92241 0.92174 1.21577 0.93689 1.19722 1.21898 0.93122 1.25738 0.98582 0.97485 0.96770 1.70077 1.24072 1.29883 1.32042 0.85640 0.80240 0.78896 0.77469 1.20086 1.21071 1.19273 1.21535 0.96665 0.97689 0.97630 1.22268 0.95337 0.93976 0.95025 0.90986 0.92807 0.91833 0.76359 0.89398 0.90469 0.91200 0.90039 0.90707 0.91767 0.91229 0.93015 0.94959 0.89925 0.97529 0.93722 0.94293 0.99648 0.93160 0.93545 0.92675 0.96858 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 7.47 71.98 0.54 -3.47 16 2 C 0.14 3.24 1.20 -9.95 -0.01 3.23 16 3 O -0.57 -12.10 11.15 -148.98 -1.66 -13.76 16 4 C -0.14 -2.49 6.06 31.67 0.19 -2.30 16 5 C -0.11 -2.12 6.91 31.88 0.22 -1.90 16 6 C -0.12 -3.01 4.64 31.67 0.15 -2.87 16 7 C 0.11 3.06 0.59 4.37 0.00 3.06 16 8 C -0.15 -4.35 6.42 71.98 0.46 -3.89 16 9 N -0.51 -17.47 2.81 -842.12 -2.37 -19.83 16 10 C 0.06 2.53 4.81 86.33 0.42 2.94 16 11 C -0.09 -4.21 5.19 30.65 0.16 -4.05 16 12 C 0.05 2.35 2.03 -11.46 -0.02 2.33 16 13 C -0.53 -30.13 8.49 25.60 0.22 -29.92 16 14 H 0.05 2.83 7.75 -2.91 -0.02 2.81 16 15 C 0.01 0.71 5.29 84.66 0.45 1.16 16 16 N -0.92 -54.88 11.99 21.45 0.26 -54.62 16 17 Si 0.95 44.60 29.54 68.60 2.03 46.63 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.10 -4.19 5.32 30.64 0.16 -4.03 16 22 C 0.06 2.25 3.69 86.32 0.32 2.57 16 23 H 0.07 2.06 7.00 -2.39 -0.02 2.05 16 24 H 0.05 1.41 5.57 -2.39 -0.01 1.40 16 25 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.39 4.96 9.05 -74.06 -0.67 4.29 16 27 H 0.09 1.21 8.05 -2.39 -0.02 1.20 16 28 H 0.08 1.39 7.85 -2.38 -0.02 1.37 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 1.96 6.44 -2.39 -0.02 1.95 16 32 H 0.06 1.60 7.84 -2.39 -0.02 1.58 16 33 H 0.07 1.87 7.81 -2.38 -0.02 1.85 16 34 H 0.05 1.63 6.32 -2.39 -0.02 1.61 16 35 H 0.03 1.02 7.37 -2.39 -0.02 1.00 16 36 H 0.08 2.89 5.63 -2.39 -0.01 2.88 16 37 H 0.01 0.27 7.40 -2.39 -0.02 0.26 16 38 H 0.04 2.41 6.82 -2.39 -0.02 2.40 16 39 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 40 H -0.01 -0.87 8.12 -2.39 -0.02 -0.89 16 41 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 42 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 44 H 0.01 0.52 6.68 -2.39 -0.02 0.51 16 45 H 0.09 2.94 5.04 -2.39 -0.01 2.92 16 Total: -1.00 -63.33 322.79 1.80 -61.53 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.29 Total: 17.19 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 3.25 Total: -37.14 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -2.11 Total: -74.46 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.66 Total: -13.76 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.33 1.80 -61.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.661 kcal (2) G-P(sol) polarization free energy of solvation -63.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds