Wall clock time and date at job start Mon Mar 30 2020 07:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46900 * 110.01889 * 2 1 4 4 C 1.46849 * 110.99788 * 172.54927 * 3 2 1 5 5 C 1.53045 * 109.52116 * 174.15821 * 4 3 2 6 6 C 1.53123 * 109.27446 * 59.17828 * 5 4 3 7 7 C 1.50698 * 109.52127 * 182.37598 * 6 5 4 8 8 H 1.08004 * 120.00086 * 359.87253 * 7 6 5 9 9 C 1.37872 * 120.00198 * 179.87616 * 7 6 5 10 10 N 1.31518 * 119.99896 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00179 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46961 * 59.99570 * 11 9 7 13 13 H 1.48497 * 109.47038 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46686 * 299.99760 * 11 9 7 15 15 C 1.53114 * 109.21363 * 302.31592 * 6 5 4 16 16 C 1.46846 * 111.00075 * 48.33993 * 3 2 1 17 17 C 1.54270 * 110.03252 * 121.39080 * 2 1 3 18 18 C 1.54964 * 104.16204 * 95.75000 * 17 2 1 19 19 C 1.54891 * 102.77693 * 37.89413 * 18 17 2 20 20 C 1.53877 * 110.03646 * 238.60383 * 2 1 3 21 21 C 1.53009 * 110.02688 * 359.95510 * 20 2 1 22 22 O 1.42898 * 110.03395 * 121.37978 * 20 2 1 23 23 H 1.09002 * 109.46976 * 60.70574 * 1 2 3 24 24 H 1.09000 * 109.47494 * 180.70034 * 1 2 3 25 25 H 1.09000 * 109.47671 * 300.70350 * 1 2 3 26 26 H 1.09000 * 109.46482 * 54.14309 * 4 3 2 27 27 H 1.09000 * 109.45358 * 294.16957 * 4 3 2 28 28 H 1.08997 * 109.50022 * 299.24051 * 5 4 3 29 29 H 1.09000 * 109.50007 * 179.11762 * 5 4 3 30 30 H 1.09002 * 109.52181 * 62.25405 * 6 5 4 31 31 H 0.96997 * 119.99854 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.50269 * 177.63299 * 15 6 5 33 33 H 1.09005 * 109.50255 * 297.74314 * 15 6 5 34 34 H 1.09004 * 109.45892 * 305.85545 * 16 3 2 35 35 H 1.08998 * 109.45904 * 65.83154 * 16 3 2 36 36 H 1.08992 * 110.48943 * 214.39999 * 17 2 1 37 37 H 1.09005 * 110.48657 * 337.04709 * 17 2 1 38 38 H 1.09001 * 110.72455 * 279.57968 * 18 17 2 39 39 H 1.09001 * 110.92247 * 156.29540 * 18 17 2 40 40 H 1.09001 * 110.49059 * 203.40774 * 19 18 17 41 41 H 1.09002 * 110.48928 * 80.75572 * 19 18 17 42 42 H 1.09000 * 109.47181 * 59.99887 * 21 20 2 43 43 H 1.09000 * 109.46738 * 179.97438 * 21 20 2 44 44 H 1.08995 * 109.47054 * 299.99704 * 21 20 2 45 45 H 0.96700 * 114.00339 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0328 1.3802 0.0000 4 6 3.4902 1.4093 0.1778 5 6 3.9952 2.8462 0.0274 6 6 3.3166 3.7327 1.0754 7 6 3.7658 5.1598 0.8948 8 1 4.4670 5.4104 0.1125 9 6 3.2817 6.1456 1.7283 10 7 2.4274 5.8406 2.6806 11 14 3.8379 7.9148 1.5040 12 1 3.4679 8.3813 0.1437 13 1 3.1765 8.7740 2.5186 14 1 5.3113 7.9952 1.6711 15 6 1.7979 3.6481 0.8997 16 6 1.3568 2.1867 1.0242 17 6 2.0584 -0.7549 1.2372 18 6 2.3297 -2.1898 0.7186 19 6 2.8884 -1.9398 -0.7042 20 6 2.0571 -0.7531 -1.2340 21 6 0.8861 -1.2671 -2.0740 22 8 2.8816 0.1104 -2.0192 23 1 -0.3633 0.5028 -0.8963 24 1 -0.3634 -1.0276 0.0126 25 1 -0.3634 0.5247 0.8836 26 1 3.9607 0.7782 -0.5762 27 1 3.7422 1.0378 1.1710 28 1 3.7555 3.2136 -0.9704 29 1 5.0749 2.8697 0.1750 30 1 3.5875 3.3891 2.0737 31 1 2.0866 6.5342 3.2668 32 1 1.3087 4.2444 1.6700 33 1 1.5236 4.0282 -0.0844 34 1 0.2777 2.1202 0.8850 35 1 1.6191 1.8115 2.0134 36 1 2.9805 -0.2989 1.5973 37 1 1.3057 -0.7695 2.0255 38 1 1.4051 -2.7654 0.6748 39 1 3.0686 -2.6952 1.3404 40 1 2.7414 -2.8188 -1.3318 41 1 3.9448 -1.6750 -0.6582 42 1 0.2766 -0.4249 -2.4016 43 1 1.2695 -1.7983 -2.9452 44 1 0.2780 -1.9440 -1.4739 45 1 3.2445 -0.3066 -2.8126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397164129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:36 Heat of formation + Delta-G solvation = -44.809274 kcal Electronic energy + Delta-G solvation = -22661.759061 eV Core-core repulsion = 19678.945400 eV Total energy + Delta-G solvation = -2982.813661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42266 -37.06491 -35.05742 -33.28516 -31.69332 -30.56150 -29.51588 -28.68227 -25.66169 -25.46484 -24.08967 -21.89543 -21.58018 -20.56993 -18.64922 -17.82338 -17.04577 -16.14905 -15.57324 -15.02879 -14.58158 -14.36178 -13.86028 -13.71535 -13.50028 -13.17781 -12.91352 -12.59083 -12.54593 -12.25229 -11.85654 -11.54514 -11.51176 -11.44038 -11.05063 -10.96103 -10.88178 -10.70542 -10.62974 -10.51622 -10.41363 -10.11689 -9.86491 -9.80431 -9.58217 -9.24896 -8.64706 -8.54206 -8.17176 -7.36793 -5.86966 -3.91738 3.39032 3.42896 3.46315 4.19855 4.52762 4.53463 4.61798 4.76070 4.96070 5.19659 5.33400 5.33915 5.42706 5.43729 5.50207 5.63166 5.74149 5.80087 5.83196 5.93485 5.98585 6.05538 6.09108 6.12690 6.22499 6.28076 6.34728 6.38886 6.44712 6.55929 6.68716 6.80995 6.89079 7.12739 7.29147 7.36857 7.61350 7.78912 7.87414 7.99521 8.09969 8.22207 8.31863 8.61642 9.12066 9.71823 11.18958 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035566 B = 0.005136 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.080089 B = 5450.808141 C = 5609.735764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.120 3.880 3 N -0.502 5.502 4 C 0.058 3.942 5 C -0.103 4.103 6 C 0.048 3.952 7 C -0.507 4.507 8 H 0.052 0.948 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.888 3.112 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.279 1.279 15 C -0.101 4.101 16 C 0.049 3.951 17 C -0.162 4.162 18 C -0.117 4.117 19 C -0.154 4.154 20 C 0.138 3.862 21 C -0.172 4.172 22 O -0.523 6.523 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.015 0.985 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.017 0.983 31 H 0.258 0.742 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.017 0.983 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 -17.049 -6.271 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 N -0.225 5.225 4 C -0.069 4.069 5 C -0.141 4.141 6 C 0.029 3.971 7 C -0.545 4.545 8 H 0.071 0.929 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.717 3.283 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.204 1.204 15 C -0.140 4.140 16 C -0.078 4.078 17 C -0.201 4.201 18 C -0.155 4.155 19 C -0.191 4.191 20 C 0.097 3.903 21 C -0.229 4.229 22 O -0.327 6.327 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.312 -16.295 -6.108 17.714 hybrid contribution 0.548 0.179 0.374 0.687 sum -2.764 -16.116 -5.734 17.328 Atomic orbital electron populations 1.22120 0.94000 1.01070 1.02811 1.21589 0.94456 0.89696 0.91298 1.62045 1.05240 1.07032 1.48180 1.22359 0.87420 0.99081 0.98037 1.21625 0.98046 0.93354 1.01035 1.18679 0.91542 0.93627 0.93232 1.21217 1.25487 0.92695 1.15142 0.92937 1.24964 0.95194 0.98635 0.95255 1.69877 1.31514 1.32887 1.19054 0.86719 0.78766 0.85124 0.77722 1.20361 1.21448 1.20445 1.21645 0.99771 0.91123 1.01431 1.22417 0.97282 0.96662 0.91415 1.23221 1.02456 0.95692 0.98708 1.22326 1.00428 0.96928 0.95833 1.23156 1.00542 0.98287 0.97162 1.21791 0.89380 0.88385 0.90789 1.22577 0.99259 1.01584 0.99497 1.86962 1.66917 1.40110 1.38673 0.91490 0.92563 0.92032 0.89825 0.96734 0.92614 0.93877 0.96530 0.93200 0.89256 0.94037 0.92466 0.96429 0.90132 0.91627 0.91746 0.91789 0.91723 0.90718 0.91188 0.93096 0.91731 0.79767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 6.57 37.15 0.24 -1.65 16 2 C 0.12 1.77 0.63 -130.48 -0.08 1.69 16 3 N -0.50 -9.34 4.01 -217.65 -0.87 -10.21 16 4 C 0.06 1.13 4.32 -3.83 -0.02 1.11 16 5 C -0.10 -2.32 5.32 -26.64 -0.14 -2.47 16 6 C 0.05 1.25 2.16 -91.65 -0.20 1.05 16 7 C -0.51 -14.50 8.56 -34.44 -0.29 -14.79 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 10 N -0.89 -26.22 11.36 55.43 0.63 -25.59 16 11 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C -0.10 -2.52 5.13 -26.59 -0.14 -2.65 16 16 C 0.05 1.02 4.73 -3.77 -0.02 1.00 16 17 C -0.16 -2.24 5.12 -25.03 -0.13 -2.37 16 18 C -0.12 -1.28 6.91 -24.70 -0.17 -1.45 16 19 C -0.15 -1.65 6.10 -25.07 -0.15 -1.81 16 20 C 0.14 1.72 1.04 -89.49 -0.09 1.63 16 21 C -0.17 -1.79 7.52 37.16 0.28 -1.51 16 22 O -0.52 -7.31 9.36 -35.23 -0.33 -7.64 16 23 H 0.07 0.92 6.78 -51.93 -0.35 0.57 16 24 H 0.06 0.61 6.70 -51.93 -0.35 0.27 16 25 H 0.06 0.86 6.20 -51.93 -0.32 0.54 16 26 H 0.08 1.52 5.40 -51.93 -0.28 1.24 16 27 H 0.01 0.29 5.95 -51.93 -0.31 -0.02 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 33 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.09 5.85 -51.93 -0.30 0.79 16 35 H 0.02 0.37 7.73 -51.93 -0.40 -0.03 16 36 H 0.08 1.28 5.28 -51.93 -0.27 1.00 16 37 H 0.06 0.89 7.84 -51.93 -0.41 0.48 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.58 7.84 -51.93 -0.41 0.17 16 41 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 42 H 0.07 0.81 6.76 -51.93 -0.35 0.46 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.61 6.72 -51.93 -0.35 0.26 16 45 H 0.36 3.49 9.07 45.56 0.41 3.90 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -30.33 320.41 -8.70 -39.03 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.93 Total: 3.28 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -1.00 Total: -20.61 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.24 Total: -35.80 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.33 Total: -7.64 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.33 -8.70 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.777 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds