Wall clock time and date at job start Mon Mar 30 2020 07:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46900 * 110.01889 * 2 1 4 4 C 1.46849 * 110.99788 * 172.54927 * 3 2 1 5 5 C 1.53045 * 109.52116 * 174.15821 * 4 3 2 6 6 C 1.53123 * 109.27446 * 59.17828 * 5 4 3 7 7 C 1.50698 * 109.52127 * 182.37598 * 6 5 4 8 8 H 1.08004 * 120.00086 * 359.87253 * 7 6 5 9 9 C 1.37872 * 120.00198 * 179.87616 * 7 6 5 10 10 N 1.31518 * 119.99896 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00179 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.46961 * 59.99570 * 11 9 7 13 13 H 1.48497 * 109.47038 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46686 * 299.99760 * 11 9 7 15 15 C 1.53114 * 109.21363 * 302.31592 * 6 5 4 16 16 C 1.46846 * 111.00075 * 48.33993 * 3 2 1 17 17 C 1.54270 * 110.03252 * 121.39080 * 2 1 3 18 18 C 1.54964 * 104.16204 * 95.75000 * 17 2 1 19 19 C 1.54891 * 102.77693 * 37.89413 * 18 17 2 20 20 C 1.53877 * 110.03646 * 238.60383 * 2 1 3 21 21 C 1.53009 * 110.02688 * 359.95510 * 20 2 1 22 22 O 1.42898 * 110.03395 * 121.37978 * 20 2 1 23 23 H 1.09002 * 109.46976 * 60.70574 * 1 2 3 24 24 H 1.09000 * 109.47494 * 180.70034 * 1 2 3 25 25 H 1.09000 * 109.47671 * 300.70350 * 1 2 3 26 26 H 1.09000 * 109.46482 * 54.14309 * 4 3 2 27 27 H 1.09000 * 109.45358 * 294.16957 * 4 3 2 28 28 H 1.08997 * 109.50022 * 299.24051 * 5 4 3 29 29 H 1.09000 * 109.50007 * 179.11762 * 5 4 3 30 30 H 1.09002 * 109.52181 * 62.25405 * 6 5 4 31 31 H 0.96997 * 119.99854 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.50269 * 177.63299 * 15 6 5 33 33 H 1.09005 * 109.50255 * 297.74314 * 15 6 5 34 34 H 1.09004 * 109.45892 * 305.85545 * 16 3 2 35 35 H 1.08998 * 109.45904 * 65.83154 * 16 3 2 36 36 H 1.08992 * 110.48943 * 214.39999 * 17 2 1 37 37 H 1.09005 * 110.48657 * 337.04709 * 17 2 1 38 38 H 1.09001 * 110.72455 * 279.57968 * 18 17 2 39 39 H 1.09001 * 110.92247 * 156.29540 * 18 17 2 40 40 H 1.09001 * 110.49059 * 203.40774 * 19 18 17 41 41 H 1.09002 * 110.48928 * 80.75572 * 19 18 17 42 42 H 1.09000 * 109.47181 * 59.99887 * 21 20 2 43 43 H 1.09000 * 109.46738 * 179.97438 * 21 20 2 44 44 H 1.08995 * 109.47054 * 299.99704 * 21 20 2 45 45 H 0.96700 * 114.00339 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0328 1.3802 0.0000 4 6 3.4902 1.4093 0.1778 5 6 3.9952 2.8462 0.0274 6 6 3.3166 3.7327 1.0754 7 6 3.7658 5.1598 0.8948 8 1 4.4670 5.4104 0.1125 9 6 3.2817 6.1456 1.7283 10 7 2.4274 5.8406 2.6806 11 14 3.8379 7.9148 1.5040 12 1 3.4679 8.3813 0.1437 13 1 3.1765 8.7740 2.5186 14 1 5.3113 7.9952 1.6711 15 6 1.7979 3.6481 0.8997 16 6 1.3568 2.1867 1.0242 17 6 2.0584 -0.7549 1.2372 18 6 2.3297 -2.1898 0.7186 19 6 2.8884 -1.9398 -0.7042 20 6 2.0571 -0.7531 -1.2340 21 6 0.8861 -1.2671 -2.0740 22 8 2.8816 0.1104 -2.0192 23 1 -0.3633 0.5028 -0.8963 24 1 -0.3634 -1.0276 0.0126 25 1 -0.3634 0.5247 0.8836 26 1 3.9607 0.7782 -0.5762 27 1 3.7422 1.0378 1.1710 28 1 3.7555 3.2136 -0.9704 29 1 5.0749 2.8697 0.1750 30 1 3.5875 3.3891 2.0737 31 1 2.0866 6.5342 3.2668 32 1 1.3087 4.2444 1.6700 33 1 1.5236 4.0282 -0.0844 34 1 0.2777 2.1202 0.8850 35 1 1.6191 1.8115 2.0134 36 1 2.9805 -0.2989 1.5973 37 1 1.3057 -0.7695 2.0255 38 1 1.4051 -2.7654 0.6748 39 1 3.0686 -2.6952 1.3404 40 1 2.7414 -2.8188 -1.3318 41 1 3.9448 -1.6750 -0.6582 42 1 0.2766 -0.4249 -2.4016 43 1 1.2695 -1.7983 -2.9452 44 1 0.2780 -1.9440 -1.4739 45 1 3.2445 -0.3066 -2.8126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397164129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:35 Heat of formation + Delta-G solvation = -64.829092 kcal Electronic energy + Delta-G solvation = -22662.627186 eV Core-core repulsion = 19678.945400 eV Total energy + Delta-G solvation = -2983.681786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59205 -38.62216 -36.27139 -35.02056 -33.22394 -31.92624 -31.15351 -29.96902 -27.47631 -26.43028 -25.45603 -23.62060 -23.17408 -21.75930 -20.23023 -19.19596 -18.52322 -17.99457 -16.74736 -16.48493 -16.02341 -15.66461 -15.27508 -15.06471 -14.75002 -14.69376 -14.36959 -14.12293 -13.89145 -13.74124 -13.14216 -13.02644 -12.92132 -12.74830 -12.50677 -12.45018 -12.27440 -12.13383 -11.98795 -11.87954 -11.87226 -11.65694 -11.38893 -11.37082 -11.20251 -10.70493 -10.57974 -10.42838 -10.26489 -8.86539 -8.06879 -6.20940 1.39957 1.42312 1.49828 2.43935 3.01571 3.18881 3.50389 3.68001 3.69508 3.99675 4.25814 4.28320 4.31643 4.40104 4.43758 4.48742 4.55405 4.61154 4.66842 4.72199 4.84409 4.86614 4.93335 4.96537 5.01576 5.04190 5.09545 5.12402 5.17613 5.22754 5.24559 5.33408 5.37779 5.44864 5.48605 5.54314 5.60648 5.67466 6.03074 6.08981 6.41859 6.47862 6.53683 6.90332 7.19058 7.46363 8.97337 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035566 B = 0.005136 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.080089 B = 5450.808141 C = 5609.735764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.109 3.891 3 N -0.508 5.508 4 C 0.071 3.929 5 C -0.095 4.095 6 C 0.046 3.954 7 C -0.535 4.535 8 H 0.048 0.952 9 C 0.011 3.989 10 N -0.919 5.919 11 Si 0.955 3.045 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.271 1.271 15 C -0.092 4.092 16 C 0.063 3.937 17 C -0.164 4.164 18 C -0.110 4.110 19 C -0.147 4.147 20 C 0.136 3.864 21 C -0.166 4.166 22 O -0.552 6.552 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.104 0.896 27 H 0.008 0.992 28 H 0.044 0.956 29 H 0.043 0.957 30 H -0.018 1.018 31 H 0.260 0.740 32 H 0.059 0.941 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.006 0.994 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.237 -19.017 -7.554 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.019 3.981 3 N -0.232 5.232 4 C -0.056 4.056 5 C -0.133 4.133 6 C 0.028 3.972 7 C -0.573 4.573 8 H 0.066 0.934 9 C -0.187 4.187 10 N -0.558 5.558 11 Si 0.780 3.220 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.197 1.197 15 C -0.130 4.130 16 C -0.065 4.065 17 C -0.203 4.203 18 C -0.148 4.148 19 C -0.184 4.184 20 C 0.095 3.905 21 C -0.223 4.223 22 O -0.358 6.358 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.067 0.933 26 H 0.122 0.878 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.000 1.000 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.024 0.976 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.605 -18.287 -7.408 20.057 hybrid contribution 0.643 0.783 0.780 1.279 sum -2.962 -17.504 -6.627 18.950 Atomic orbital electron populations 1.22117 0.92848 1.02816 1.01929 1.21900 0.95507 0.87394 0.93309 1.61981 1.04485 1.09827 1.46868 1.22216 0.88307 0.96793 0.98330 1.21495 0.97874 0.94967 0.98958 1.18638 0.92763 0.93432 0.92387 1.21570 1.25950 0.94292 1.15462 0.93365 1.25766 0.95135 1.02927 0.94839 1.70023 1.32109 1.34176 1.19537 0.85664 0.78576 0.79823 0.77902 1.19722 1.20721 1.19664 1.21404 0.98664 0.93779 0.99163 1.22153 0.98362 0.94282 0.91658 1.23175 1.01066 0.97728 0.98328 1.22332 1.01727 0.94877 0.95827 1.23111 0.99590 0.98448 0.97299 1.21854 0.90372 0.88243 0.89990 1.22515 0.98282 1.01414 1.00123 1.86862 1.67409 1.41590 1.39928 0.92003 0.89503 0.93260 0.87846 0.97445 0.93685 0.93841 0.99994 0.93094 0.92257 0.95628 0.90778 0.97584 0.92719 0.91741 0.89671 0.90965 0.88939 0.91643 0.92653 0.90997 0.90233 0.77603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 6.57 71.98 0.47 -2.97 16 2 C 0.11 3.04 0.63 4.25 0.00 3.04 16 3 N -0.51 -18.91 4.01 -842.50 -3.38 -22.29 16 4 C 0.07 2.77 4.32 86.33 0.37 3.14 16 5 C -0.10 -4.43 5.32 30.65 0.16 -4.27 16 6 C 0.05 2.54 2.16 -11.46 -0.02 2.51 16 7 C -0.53 -31.63 8.56 25.60 0.22 -31.41 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.01 0.67 5.31 84.65 0.45 1.12 16 10 N -0.92 -55.56 11.36 21.45 0.24 -55.31 16 11 Si 0.95 45.64 29.54 68.60 2.03 47.67 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 15 C -0.09 -4.76 5.13 30.69 0.16 -4.60 16 16 C 0.06 2.67 4.73 86.37 0.41 3.08 16 17 C -0.16 -4.32 5.12 31.70 0.16 -4.16 16 18 C -0.11 -2.03 6.91 31.91 0.22 -1.81 16 19 C -0.15 -2.63 6.10 31.67 0.19 -2.43 16 20 C 0.14 3.02 1.04 -10.06 -0.01 3.01 16 21 C -0.17 -2.83 7.52 71.99 0.54 -2.29 16 22 O -0.55 -14.23 9.36 -148.98 -1.39 -15.63 16 23 H 0.06 1.59 6.78 -2.39 -0.02 1.57 16 24 H 0.09 1.59 6.70 -2.39 -0.02 1.57 16 25 H 0.05 1.31 6.20 -2.39 -0.01 1.30 16 26 H 0.10 3.67 5.40 -2.39 -0.01 3.66 16 27 H 0.01 0.31 5.95 -2.39 -0.01 0.30 16 28 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 31 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.06 3.41 6.16 -2.39 -0.01 3.40 16 33 H 0.02 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.07 2.86 5.85 -2.39 -0.01 2.84 16 35 H 0.01 0.26 7.73 -2.39 -0.02 0.25 16 36 H 0.05 1.73 5.28 -2.39 -0.01 1.72 16 37 H 0.06 1.67 7.84 -2.38 -0.02 1.66 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.19 7.84 -2.39 -0.02 1.17 16 41 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 42 H 0.05 1.12 6.76 -2.39 -0.02 1.11 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.08 1.12 6.72 -2.39 -0.02 1.10 16 45 H 0.38 6.36 9.07 -74.06 -0.67 5.69 16 Total: -1.00 -67.70 320.41 1.12 -66.58 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.30 Total: 17.03 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 3.33 Total: -38.04 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -3.14 Total: -77.60 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -1.39 Total: -15.63 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -67.70 1.12 -66.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.752 kcal (2) G-P(sol) polarization free energy of solvation -67.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds