Wall clock time and date at job start Mon Mar 30 2020 07:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 110.01918 * 2 1 4 4 C 1.54273 * 110.03074 * 121.38907 * 2 1 3 5 5 C 1.54889 * 104.19704 * 142.89755 * 4 2 1 6 6 C 1.54891 * 102.74369 * 322.05539 * 5 4 2 7 7 C 1.53877 * 110.03097 * 238.60295 * 2 1 3 8 8 C 1.52993 * 110.03601 * 0.02562 * 7 2 1 9 9 N 1.46900 * 110.02803 * 121.43641 * 7 2 1 10 10 C 1.46846 * 110.99902 * 191.74614 * 9 7 2 11 11 C 1.53038 * 109.52617 * 174.15433 * 10 9 7 12 12 C 1.53119 * 109.27666 * 59.17966 * 11 10 9 13 13 C 1.50701 * 109.52581 * 182.44090 * 12 11 10 14 14 H 1.07992 * 120.00167 * 119.68138 * 13 12 11 15 15 C 1.37874 * 119.99430 * 299.68223 * 13 12 11 16 16 N 1.31515 * 120.00626 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99547 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47422 * 60.00075 * 17 15 13 19 19 H 1.48504 * 109.47529 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47185 * 299.99989 * 17 15 13 21 21 C 1.53124 * 109.16183 * 302.34772 * 12 11 10 22 22 C 1.46846 * 111.00698 * 67.53440 * 9 7 2 23 23 H 1.08998 * 109.46980 * 60.70609 * 1 2 3 24 24 H 1.09008 * 109.46971 * 180.70148 * 1 2 3 25 25 H 1.09000 * 109.47558 * 300.70431 * 1 2 3 26 26 H 0.96699 * 113.99989 * 59.28791 * 3 2 1 27 27 H 1.08998 * 110.48363 * 261.57253 * 4 2 1 28 28 H 1.08997 * 110.48828 * 24.21263 * 4 2 1 29 29 H 1.08997 * 110.76101 * 80.36470 * 5 4 2 30 30 H 1.08994 * 110.75810 * 203.55770 * 5 4 2 31 31 H 1.09005 * 110.48238 * 156.62559 * 6 5 4 32 32 H 1.08999 * 110.48659 * 279.12707 * 6 5 4 33 33 H 1.09003 * 109.46986 * 59.99431 * 8 7 2 34 34 H 1.08993 * 109.47406 * 179.97438 * 8 7 2 35 35 H 1.08996 * 109.47221 * 299.99968 * 8 7 2 36 36 H 1.08996 * 109.46463 * 294.17480 * 10 9 7 37 37 H 1.09008 * 109.46296 * 54.14199 * 10 9 7 38 38 H 1.08991 * 109.50318 * 299.24090 * 11 10 9 39 39 H 1.08999 * 109.50247 * 179.11808 * 11 10 9 40 40 H 1.09005 * 109.52596 * 62.24752 * 12 11 10 41 41 H 0.97002 * 120.00139 * 179.97438 * 16 15 13 42 42 H 1.08996 * 109.49923 * 297.71425 * 21 12 11 43 43 H 1.08993 * 109.53747 * 177.61677 * 21 12 11 44 44 H 1.09004 * 109.45577 * 305.85907 * 22 9 7 45 45 H 1.09004 * 109.46133 * 65.81904 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0192 1.3426 0.0000 4 6 2.0584 -0.7549 1.2373 5 6 3.3137 -1.5004 0.7200 6 6 2.8874 -1.9410 -0.7024 7 6 2.0570 -0.7532 -1.2340 8 6 0.8862 -1.2656 -2.0749 9 7 2.9057 0.1342 -2.0405 10 6 3.1926 -0.4610 -3.3519 11 6 3.9529 0.5477 -4.2160 12 6 5.2575 0.9334 -3.5133 13 6 5.9821 1.9714 -4.3308 14 1 6.1911 2.9428 -3.9076 15 6 6.3783 1.6810 -5.6191 16 7 6.1233 0.4983 -6.1347 17 14 7.2759 2.9680 -6.6327 18 1 8.5370 3.3474 -5.9465 19 1 7.5894 2.4119 -7.9735 20 1 6.4144 4.1680 -6.7842 21 6 4.9333 1.5057 -2.1305 22 6 4.1446 0.4693 -1.3270 23 1 -0.3633 0.5028 -0.8962 24 1 -0.3633 -1.0277 0.0126 25 1 -0.3634 0.5247 0.8836 26 1 1.7299 1.8666 0.7595 27 1 2.3296 -0.0527 2.0255 28 1 1.3142 -1.4652 1.5974 29 1 4.1710 -0.8288 0.6756 30 1 3.5344 -2.3653 1.3454 31 1 3.7637 -2.1044 -1.3298 32 1 2.2791 -2.8443 -0.6558 33 1 0.2777 -0.4227 -2.4025 34 1 1.2696 -1.7968 -2.9461 35 1 0.2770 -1.9421 -1.4755 36 1 3.8000 -1.3563 -3.2194 37 1 2.2564 -0.7268 -3.8428 38 1 3.3405 1.4376 -4.3605 39 1 4.1794 0.1000 -5.1837 40 1 5.8870 0.0503 -3.4034 41 1 6.4017 0.2941 -7.0412 42 1 4.3363 2.4108 -2.2422 43 1 5.8599 1.7432 -1.6080 44 1 3.8997 0.8792 -0.3470 45 1 4.7475 -0.4304 -1.2038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397164130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:38 Heat of formation + Delta-G solvation = -45.952194 kcal Electronic energy + Delta-G solvation = -22742.565902 eV Core-core repulsion = 19759.702680 eV Total energy + Delta-G solvation = -2982.863222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.47490 -37.02765 -34.92083 -33.13941 -32.01189 -30.69034 -29.43869 -28.63936 -25.59920 -25.50088 -23.96152 -21.87798 -21.60958 -20.58906 -18.68332 -17.96052 -16.69547 -16.13441 -15.79297 -15.09411 -14.56957 -14.21399 -13.92460 -13.66194 -13.48067 -13.30034 -12.93586 -12.57505 -12.34771 -12.18894 -11.80855 -11.57341 -11.53889 -11.40165 -11.04325 -10.91360 -10.81972 -10.69900 -10.63314 -10.53668 -10.38857 -10.13807 -9.93025 -9.79849 -9.59526 -9.25007 -8.64724 -8.54486 -8.17357 -7.37785 -5.87148 -3.91851 3.38960 3.42835 3.46263 4.20596 4.50790 4.53369 4.61434 4.82524 4.96855 5.22941 5.33663 5.38329 5.42729 5.47535 5.53395 5.63909 5.76546 5.81108 5.87457 5.92685 6.03083 6.03890 6.09634 6.14179 6.22201 6.28115 6.31380 6.40295 6.44441 6.55466 6.67268 6.80249 6.88266 7.12170 7.29163 7.36711 7.61272 7.79317 7.88090 7.99406 8.10218 8.22092 8.31391 8.61536 9.11954 9.71717 11.18831 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034412 B = 0.005245 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.464481 B = 5337.511545 C = 5469.320863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.138 3.862 3 O -0.523 6.523 4 C -0.150 4.150 5 C -0.125 4.125 6 C -0.154 4.154 7 C 0.120 3.880 8 C -0.145 4.145 9 N -0.499 5.499 10 C 0.048 3.952 11 C -0.101 4.101 12 C 0.048 3.952 13 C -0.507 4.507 14 H 0.052 0.948 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.104 4.104 22 C 0.061 3.939 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.357 0.643 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.058 0.942 38 H 0.041 0.959 39 H 0.089 0.911 40 H 0.017 0.983 41 H 0.258 0.742 42 H 0.055 0.945 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.047 -4.762 13.603 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.097 3.903 3 O -0.326 6.326 4 C -0.188 4.188 5 C -0.162 4.162 6 C -0.193 4.193 7 C 0.029 3.971 8 C -0.202 4.202 9 N -0.223 5.223 10 C -0.079 4.079 11 C -0.139 4.139 12 C 0.030 3.970 13 C -0.545 4.545 14 H 0.071 0.929 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.142 4.142 22 C -0.066 4.066 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.202 0.798 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -10.996 -4.618 12.769 17.473 hybrid contribution 0.676 -0.030 0.048 0.679 sum -10.320 -4.648 12.818 17.100 Atomic orbital electron populations 1.22593 0.96094 1.02183 1.02187 1.21806 0.91801 0.83191 0.93524 1.86953 1.74418 1.22364 1.48847 1.23112 0.98136 0.99828 0.97739 1.22564 0.98037 0.99712 0.95934 1.23090 1.00748 0.98538 0.96931 1.21639 0.93680 0.89869 0.91899 1.22141 0.97360 1.00985 0.99708 1.62053 1.17243 1.40628 1.02382 1.22426 0.98484 0.96959 0.90014 1.21617 0.96098 0.96597 0.99632 1.18676 0.92749 0.95541 0.90066 1.21214 1.35655 0.99511 0.98163 0.92934 1.24962 0.96052 0.95226 0.97798 1.69877 1.47387 1.20600 1.15466 0.86723 0.80255 0.82036 0.79326 1.20448 1.21448 1.20361 1.21643 0.96999 0.97887 0.97693 1.22353 0.89046 0.97168 0.98040 0.91218 0.91765 0.93101 0.79777 0.91368 0.91341 0.90530 0.92140 0.90906 0.91725 0.91463 0.91949 0.92571 0.96404 0.92389 0.94010 0.89304 0.96527 0.93197 0.92633 0.93896 0.89994 0.96740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 7.53 37.16 0.28 -1.52 16 2 C 0.14 1.73 1.09 -89.50 -0.10 1.63 16 3 O -0.52 -7.30 9.49 -35.23 -0.33 -7.63 16 4 C -0.15 -1.62 6.09 -25.07 -0.15 -1.77 16 5 C -0.13 -1.54 6.26 -24.74 -0.15 -1.70 16 6 C -0.15 -2.13 5.20 -25.01 -0.13 -2.26 16 7 C 0.12 1.77 0.74 -130.43 -0.10 1.67 16 8 C -0.14 -1.92 6.56 37.15 0.24 -1.68 16 9 N -0.50 -9.26 3.98 -217.67 -0.87 -10.13 16 10 C 0.05 0.99 4.66 -3.83 -0.02 0.97 16 11 C -0.10 -2.50 5.12 -26.65 -0.14 -2.64 16 12 C 0.05 1.26 2.16 -91.65 -0.20 1.06 16 13 C -0.51 -14.49 8.56 -34.44 -0.29 -14.78 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 16 N -0.89 -26.19 11.37 55.43 0.63 -25.56 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.10 -2.36 5.32 -26.65 -0.14 -2.50 16 22 C 0.06 1.18 3.28 -3.84 -0.01 1.16 16 23 H 0.07 0.81 6.78 -51.93 -0.35 0.45 16 24 H 0.06 0.60 6.68 -51.92 -0.35 0.25 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.36 3.49 9.06 45.56 0.41 3.90 16 27 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 28 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 29 H 0.08 1.06 5.78 -51.93 -0.30 0.76 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.17 5.70 -51.93 -0.30 0.88 16 32 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 33 H 0.07 0.92 6.76 -51.93 -0.35 0.57 16 34 H 0.06 0.87 6.16 -51.93 -0.32 0.55 16 35 H 0.06 0.61 6.70 -51.93 -0.35 0.26 16 36 H 0.02 0.38 6.98 -51.93 -0.36 0.01 16 37 H 0.06 1.10 5.83 -51.92 -0.30 0.80 16 38 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.08 1.48 4.72 -51.93 -0.24 1.23 16 45 H 0.01 0.29 5.87 -51.93 -0.30 -0.02 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -30.31 315.43 -8.59 -38.90 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.75 Total: 3.52 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -1.00 Total: -20.74 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.24 Total: -35.69 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.33 Total: -7.63 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.31 -8.59 -38.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.055 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds