Wall clock time and date at job start Mon Mar 30 2020 07:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 110.01918 * 2 1 4 4 C 1.54273 * 110.03074 * 121.38907 * 2 1 3 5 5 C 1.54889 * 104.19704 * 142.89755 * 4 2 1 6 6 C 1.54891 * 102.74369 * 322.05539 * 5 4 2 7 7 C 1.53877 * 110.03097 * 238.60295 * 2 1 3 8 8 C 1.52993 * 110.03601 * 0.02562 * 7 2 1 9 9 N 1.46900 * 110.02803 * 121.43641 * 7 2 1 10 10 C 1.46846 * 110.99902 * 191.74614 * 9 7 2 11 11 C 1.53038 * 109.52617 * 174.15433 * 10 9 7 12 12 C 1.53119 * 109.27666 * 59.17966 * 11 10 9 13 13 C 1.50701 * 109.52581 * 182.44090 * 12 11 10 14 14 H 1.07992 * 120.00167 * 119.68138 * 13 12 11 15 15 C 1.37874 * 119.99430 * 299.68223 * 13 12 11 16 16 N 1.31515 * 120.00626 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99547 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47422 * 60.00075 * 17 15 13 19 19 H 1.48504 * 109.47529 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47185 * 299.99989 * 17 15 13 21 21 C 1.53124 * 109.16183 * 302.34772 * 12 11 10 22 22 C 1.46846 * 111.00698 * 67.53440 * 9 7 2 23 23 H 1.08998 * 109.46980 * 60.70609 * 1 2 3 24 24 H 1.09008 * 109.46971 * 180.70148 * 1 2 3 25 25 H 1.09000 * 109.47558 * 300.70431 * 1 2 3 26 26 H 0.96699 * 113.99989 * 59.28791 * 3 2 1 27 27 H 1.08998 * 110.48363 * 261.57253 * 4 2 1 28 28 H 1.08997 * 110.48828 * 24.21263 * 4 2 1 29 29 H 1.08997 * 110.76101 * 80.36470 * 5 4 2 30 30 H 1.08994 * 110.75810 * 203.55770 * 5 4 2 31 31 H 1.09005 * 110.48238 * 156.62559 * 6 5 4 32 32 H 1.08999 * 110.48659 * 279.12707 * 6 5 4 33 33 H 1.09003 * 109.46986 * 59.99431 * 8 7 2 34 34 H 1.08993 * 109.47406 * 179.97438 * 8 7 2 35 35 H 1.08996 * 109.47221 * 299.99968 * 8 7 2 36 36 H 1.08996 * 109.46463 * 294.17480 * 10 9 7 37 37 H 1.09008 * 109.46296 * 54.14199 * 10 9 7 38 38 H 1.08991 * 109.50318 * 299.24090 * 11 10 9 39 39 H 1.08999 * 109.50247 * 179.11808 * 11 10 9 40 40 H 1.09005 * 109.52596 * 62.24752 * 12 11 10 41 41 H 0.97002 * 120.00139 * 179.97438 * 16 15 13 42 42 H 1.08996 * 109.49923 * 297.71425 * 21 12 11 43 43 H 1.08993 * 109.53747 * 177.61677 * 21 12 11 44 44 H 1.09004 * 109.45577 * 305.85907 * 22 9 7 45 45 H 1.09004 * 109.46133 * 65.81904 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0192 1.3426 0.0000 4 6 2.0584 -0.7549 1.2373 5 6 3.3137 -1.5004 0.7200 6 6 2.8874 -1.9410 -0.7024 7 6 2.0570 -0.7532 -1.2340 8 6 0.8862 -1.2656 -2.0749 9 7 2.9057 0.1342 -2.0405 10 6 3.1926 -0.4610 -3.3519 11 6 3.9529 0.5477 -4.2160 12 6 5.2575 0.9334 -3.5133 13 6 5.9821 1.9714 -4.3308 14 1 6.1911 2.9428 -3.9076 15 6 6.3783 1.6810 -5.6191 16 7 6.1233 0.4983 -6.1347 17 14 7.2759 2.9680 -6.6327 18 1 8.5370 3.3474 -5.9465 19 1 7.5894 2.4119 -7.9735 20 1 6.4144 4.1680 -6.7842 21 6 4.9333 1.5057 -2.1305 22 6 4.1446 0.4693 -1.3270 23 1 -0.3633 0.5028 -0.8962 24 1 -0.3633 -1.0277 0.0126 25 1 -0.3634 0.5247 0.8836 26 1 1.7299 1.8666 0.7595 27 1 2.3296 -0.0527 2.0255 28 1 1.3142 -1.4652 1.5974 29 1 4.1710 -0.8288 0.6756 30 1 3.5344 -2.3653 1.3454 31 1 3.7637 -2.1044 -1.3298 32 1 2.2791 -2.8443 -0.6558 33 1 0.2777 -0.4227 -2.4025 34 1 1.2696 -1.7968 -2.9461 35 1 0.2770 -1.9421 -1.4755 36 1 3.8000 -1.3563 -3.2194 37 1 2.2564 -0.7268 -3.8428 38 1 3.3405 1.4376 -4.3605 39 1 4.1794 0.1000 -5.1837 40 1 5.8870 0.0503 -3.4034 41 1 6.4017 0.2941 -7.0412 42 1 4.3363 2.4108 -2.2422 43 1 5.8599 1.7432 -1.6080 44 1 3.8997 0.8792 -0.3470 45 1 4.7475 -0.4304 -1.2038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397164130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:38 Heat of formation + Delta-G solvation = -66.188682 kcal Electronic energy + Delta-G solvation = -22743.443422 eV Core-core repulsion = 19759.702680 eV Total energy + Delta-G solvation = -2983.740742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65631 -38.56987 -36.21332 -34.83841 -33.39687 -32.15580 -31.12881 -29.92321 -27.43737 -26.45689 -25.32854 -23.56430 -23.21044 -21.75332 -20.39731 -19.25675 -18.45447 -17.73044 -16.82830 -16.59231 -16.10723 -15.62471 -15.29266 -14.95512 -14.74086 -14.53471 -14.47223 -14.27579 -13.97450 -13.56624 -13.16705 -13.02248 -12.82043 -12.69419 -12.48554 -12.41464 -12.23966 -12.14098 -11.99219 -11.91222 -11.80287 -11.62906 -11.58487 -11.34765 -11.20802 -10.70871 -10.58201 -10.42058 -10.26575 -8.87254 -8.07023 -6.21042 1.39877 1.42199 1.49705 2.43845 3.01643 3.18799 3.46558 3.65410 3.76665 4.02400 4.24711 4.31156 4.34433 4.39132 4.45487 4.50310 4.55187 4.63391 4.67689 4.71911 4.84659 4.87518 4.93358 4.95455 4.98299 5.01938 5.05639 5.14569 5.19114 5.21857 5.25149 5.35526 5.37551 5.42414 5.46892 5.53344 5.60336 5.67273 6.02985 6.08811 6.41874 6.48295 6.54775 6.90252 7.20850 7.46262 8.97241 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034412 B = 0.005245 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.464481 B = 5337.511545 C = 5469.320863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.137 3.863 3 O -0.551 6.551 4 C -0.140 4.140 5 C -0.126 4.126 6 C -0.153 4.153 7 C 0.108 3.892 8 C -0.143 4.143 9 N -0.506 5.506 10 C 0.062 3.938 11 C -0.091 4.091 12 C 0.047 3.953 13 C -0.535 4.535 14 H 0.048 0.952 15 C 0.012 3.988 16 N -0.919 5.919 17 Si 0.955 3.045 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.272 1.272 21 C -0.097 4.097 22 C 0.076 3.924 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.376 0.624 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.006 0.994 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.058 0.942 40 H -0.018 1.018 41 H 0.260 0.740 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.102 0.898 45 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.606 -4.858 15.443 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.096 3.904 3 O -0.357 6.357 4 C -0.178 4.178 5 C -0.164 4.164 6 C -0.192 4.192 7 C 0.018 3.982 8 C -0.200 4.200 9 N -0.230 5.230 10 C -0.066 4.066 11 C -0.130 4.130 12 C 0.028 3.972 13 C -0.573 4.573 14 H 0.066 0.934 15 C -0.187 4.187 16 N -0.558 5.558 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.135 4.135 22 C -0.051 4.051 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.224 0.776 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.025 0.975 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.000 1.000 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.120 0.880 45 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -12.568 -4.712 14.636 19.859 hybrid contribution 1.165 -0.015 -0.517 1.275 sum -11.403 -4.727 14.119 18.754 Atomic orbital electron populations 1.22527 0.94161 1.03296 1.02477 1.21858 0.93159 0.82590 0.92834 1.86860 1.75135 1.23364 1.50390 1.23077 0.97514 1.00085 0.97087 1.22560 0.98250 1.00267 0.95285 1.23064 0.99676 0.99109 0.97368 1.21952 0.93409 0.90124 0.92732 1.22147 0.97020 1.01229 0.99568 1.61992 1.16931 1.42042 1.02003 1.22163 0.98336 0.95027 0.91073 1.21373 0.95798 0.96700 0.99086 1.18632 0.92597 0.93830 0.92107 1.21568 1.36669 0.99908 0.99138 0.93370 1.25764 0.96730 0.97311 0.98851 1.70023 1.47849 1.22228 1.15744 0.85668 0.79130 0.79425 0.77757 1.19664 1.20717 1.19723 1.21522 0.97464 0.98273 0.96268 1.22193 0.89020 0.95751 0.98163 0.92711 0.90244 0.91053 0.77608 0.90031 0.89024 0.92575 0.90333 0.94058 0.89594 0.91967 0.93228 0.89431 0.97538 0.90697 0.95613 0.92321 1.00012 0.93090 0.93716 0.93883 0.87977 0.97537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 7.53 71.98 0.54 -2.29 16 2 C 0.14 3.00 1.09 -10.07 -0.01 2.99 16 3 O -0.55 -14.13 9.49 -148.98 -1.41 -15.55 16 4 C -0.14 -2.46 6.09 31.67 0.19 -2.26 16 5 C -0.13 -2.81 6.26 31.89 0.20 -2.61 16 6 C -0.15 -4.00 5.20 31.71 0.16 -3.83 16 7 C 0.11 2.99 0.74 4.29 0.00 3.00 16 8 C -0.14 -3.48 6.56 71.98 0.47 -3.01 16 9 N -0.51 -18.75 3.98 -842.57 -3.36 -22.11 16 10 C 0.06 2.60 4.66 86.33 0.40 3.01 16 11 C -0.09 -4.73 5.12 30.65 0.16 -4.57 16 12 C 0.05 2.57 2.16 -11.46 -0.02 2.54 16 13 C -0.53 -31.65 8.56 25.60 0.22 -31.43 16 14 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 15 C 0.01 0.68 5.31 84.65 0.45 1.13 16 16 N -0.92 -55.57 11.37 21.45 0.24 -55.33 16 17 Si 0.95 45.66 29.54 68.60 2.03 47.68 16 18 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 C -0.10 -4.54 5.32 30.65 0.16 -4.38 16 22 C 0.08 2.95 3.28 86.32 0.28 3.24 16 23 H 0.05 1.11 6.78 -2.39 -0.02 1.09 16 24 H 0.08 1.10 6.68 -2.38 -0.02 1.09 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.38 6.28 9.06 -74.06 -0.67 5.61 16 27 H 0.08 1.26 8.05 -2.39 -0.02 1.24 16 28 H 0.09 1.24 7.84 -2.39 -0.02 1.22 16 29 H 0.06 1.47 5.78 -2.39 -0.01 1.46 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.34 5.70 -2.38 -0.01 1.32 16 32 H 0.09 1.86 7.85 -2.39 -0.02 1.84 16 33 H 0.06 1.58 6.76 -2.39 -0.02 1.57 16 34 H 0.05 1.32 6.16 -2.39 -0.01 1.30 16 35 H 0.09 1.58 6.70 -2.39 -0.02 1.56 16 36 H 0.01 0.29 6.98 -2.39 -0.02 0.27 16 37 H 0.07 2.88 5.83 -2.38 -0.01 2.87 16 38 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 39 H 0.06 3.37 6.17 -2.39 -0.01 3.36 16 40 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 41 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.10 3.59 4.72 -2.38 -0.01 3.58 16 45 H 0.01 0.27 5.87 -2.38 -0.01 0.25 16 Total: -1.00 -67.83 315.43 1.02 -66.81 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.31 Total: 16.98 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 3.21 Total: -38.48 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -3.11 Total: -77.44 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -1.41 Total: -15.55 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -67.83 1.02 -66.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.626 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds