Wall clock time and date at job start Mon Mar 30 2020 07:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 110.01692 * 2 1 4 4 C 1.54273 * 110.07016 * 121.41692 * 2 1 3 5 5 C 1.54889 * 104.19356 * 142.91705 * 4 2 1 6 6 C 1.54891 * 102.74660 * 322.05587 * 5 4 2 7 7 C 1.53876 * 110.03261 * 238.60569 * 2 1 3 8 8 C 1.53002 * 110.02962 * 121.33289 * 7 2 1 9 9 N 1.46908 * 110.03058 * 359.95296 * 7 2 1 10 10 C 1.46847 * 110.99990 * 78.74129 * 9 7 2 11 11 C 1.53030 * 109.52132 * 185.84042 * 10 9 7 12 12 C 1.53114 * 109.27661 * 300.81392 * 11 10 9 13 13 C 1.50700 * 109.52610 * 177.56212 * 12 11 10 14 14 H 1.08001 * 119.99827 * 354.82351 * 13 12 11 15 15 C 1.37882 * 120.00487 * 174.82003 * 13 12 11 16 16 N 1.31510 * 119.99869 * 0.96870 * 15 13 12 17 17 Si 1.86795 * 119.99888 * 180.69399 * 15 13 12 18 18 H 1.48501 * 109.47337 * 265.27984 * 17 15 13 19 19 H 1.48497 * 109.47512 * 25.28458 * 17 15 13 20 20 H 1.48502 * 109.47063 * 145.28375 * 17 15 13 21 21 C 1.53115 * 109.16172 * 57.65897 * 12 11 10 22 22 C 1.46844 * 110.99521 * 202.94902 * 9 7 2 23 23 H 1.09002 * 109.46884 * 168.30834 * 1 2 3 24 24 H 1.08993 * 109.47187 * 288.30740 * 1 2 3 25 25 H 1.08995 * 109.47097 * 48.30661 * 1 2 3 26 26 H 0.96704 * 113.99900 * 58.60215 * 3 2 1 27 27 H 1.08994 * 110.48111 * 261.59402 * 4 2 1 28 28 H 1.09001 * 110.48220 * 24.10404 * 4 2 1 29 29 H 1.09001 * 110.75401 * 80.36993 * 5 4 2 30 30 H 1.08994 * 110.75678 * 203.73955 * 5 4 2 31 31 H 1.08995 * 110.48752 * 279.26406 * 6 5 4 32 32 H 1.09003 * 110.48534 * 156.62170 * 6 5 4 33 33 H 1.08995 * 109.47199 * 299.30788 * 8 7 2 34 34 H 1.09001 * 109.46711 * 59.31162 * 8 7 2 35 35 H 1.08997 * 109.46982 * 179.30829 * 8 7 2 36 36 H 1.08998 * 109.46756 * 65.81716 * 10 9 7 37 37 H 1.09007 * 109.45755 * 305.85335 * 10 9 7 38 38 H 1.09007 * 109.50229 * 180.88154 * 11 10 9 39 39 H 1.08994 * 109.54421 * 60.77820 * 11 10 9 40 40 H 1.09002 * 109.52525 * 297.69114 * 12 11 10 41 41 H 0.96994 * 120.00078 * 179.72568 * 16 15 13 42 42 H 1.09006 * 109.50562 * 62.28238 * 21 12 11 43 43 H 1.09005 * 109.50870 * 182.40047 * 21 12 11 44 44 H 1.09003 * 109.46292 * 294.17164 * 22 9 7 45 45 H 1.09000 * 109.46770 * 54.14386 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0192 1.3427 0.0000 4 6 2.0595 -0.7553 1.2366 5 6 3.3150 -1.4997 0.7182 6 6 2.8884 -1.9397 -0.7043 7 6 2.0572 -0.7531 -1.2340 8 6 2.9390 0.1719 -2.0753 9 7 0.9328 -1.2466 -2.0405 10 6 0.3568 -0.1692 -2.8553 11 6 -0.8967 -0.6816 -3.5682 12 6 -0.5227 -1.8728 -4.4545 13 6 -1.7631 -2.4195 -5.1132 14 1 -2.7324 -2.0185 -4.8561 15 6 -1.6605 -3.4316 -6.0439 16 7 -0.4820 -3.9329 -6.3430 17 14 -3.1962 -4.0958 -6.8745 18 1 -3.6776 -5.2932 -6.1399 19 1 -4.2531 -3.0528 -6.8677 20 1 -2.8785 -4.4695 -8.2761 21 6 0.1191 -2.9610 -3.5895 22 6 1.3431 -2.3826 -2.8757 23 1 -0.3633 -1.0064 -0.2083 24 1 -0.3633 0.3228 0.9756 25 1 -0.3633 0.6835 -0.7673 26 1 1.7214 1.8698 0.7541 27 1 2.3306 -0.0534 2.0251 28 1 1.3149 -1.4647 1.5979 29 1 4.1718 -0.8274 0.6740 30 1 3.5347 -2.3667 1.3412 31 1 2.2788 -2.8420 -0.6578 32 1 3.7646 -2.1021 -1.3321 33 1 2.3516 1.0256 -2.4131 34 1 3.7765 0.5228 -1.4724 35 1 3.3171 -0.3738 -2.9398 36 1 1.0876 0.1572 -3.5951 37 1 0.0914 0.6701 -2.2123 38 1 -1.3151 0.1137 -4.1851 39 1 -1.6340 -0.9951 -2.8293 40 1 0.1838 -1.5502 -5.2193 41 1 -0.4103 -4.6476 -6.9948 42 1 -0.6016 -3.3106 -2.8502 43 1 0.4263 -3.7943 -4.2214 44 1 2.0694 -2.0458 -3.6156 45 1 1.7942 -3.1509 -2.2478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397164131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:40 Heat of formation + Delta-G solvation = -49.368635 kcal Electronic energy + Delta-G solvation = -22620.827568 eV Core-core repulsion = 19637.816198 eV Total energy + Delta-G solvation = -2983.011370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38536 -37.27935 -35.00687 -33.40919 -31.41475 -30.83471 -29.59809 -28.47596 -26.15977 -25.39153 -23.80615 -22.23081 -21.59040 -20.39545 -18.90436 -17.93096 -16.51194 -16.07132 -15.80541 -15.64038 -14.60461 -14.22681 -14.11319 -13.56760 -13.34148 -12.94434 -12.72619 -12.69683 -12.58928 -12.05230 -12.01597 -11.85914 -11.56859 -11.20035 -11.17748 -10.92453 -10.82568 -10.71155 -10.61042 -10.53532 -10.28972 -10.17731 -10.05992 -9.91702 -9.68511 -9.34955 -8.78646 -8.64479 -8.25369 -7.58137 -5.94234 -3.98044 3.33286 3.40373 3.43954 4.12280 4.48167 4.51084 4.59742 4.88664 5.00087 5.33104 5.35808 5.37417 5.46344 5.60384 5.64562 5.77455 5.84778 5.87397 5.89824 5.98797 6.03738 6.07180 6.12090 6.15602 6.24247 6.27473 6.36861 6.38392 6.52429 6.59737 6.66761 6.71319 6.78846 6.93526 7.14539 7.22844 7.49002 7.67575 7.76203 7.84699 7.90155 8.09935 8.16925 8.53169 9.06520 9.65991 11.13396 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035220 B = 0.005108 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.807982 B = 5480.243867 C = 5715.678049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.138 3.862 3 O -0.558 6.558 4 C -0.144 4.144 5 C -0.120 4.120 6 C -0.119 4.119 7 C 0.118 3.882 8 C -0.155 4.155 9 N -0.518 5.518 10 C 0.050 3.950 11 C -0.106 4.106 12 C 0.048 3.952 13 C -0.509 4.509 14 H 0.053 0.947 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.275 1.275 20 H -0.288 1.288 21 C -0.099 4.099 22 C 0.051 3.949 23 H 0.090 0.910 24 H 0.037 0.963 25 H 0.068 0.932 26 H 0.367 0.633 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.023 0.977 41 H 0.258 0.742 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.022 0.978 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 6.532 14.095 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.097 3.903 3 O -0.363 6.363 4 C -0.182 4.182 5 C -0.158 4.158 6 C -0.157 4.157 7 C 0.028 3.972 8 C -0.213 4.213 9 N -0.242 5.242 10 C -0.077 4.077 11 C -0.144 4.144 12 C 0.030 3.970 13 C -0.547 4.547 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.200 1.200 20 H -0.214 1.214 21 C -0.138 4.138 22 C -0.076 4.076 23 H 0.109 0.891 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.214 0.786 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.040 0.960 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.585 6.019 13.716 16.362 hybrid contribution -0.419 0.036 -0.565 0.704 sum 6.166 6.055 13.151 15.736 Atomic orbital electron populations 1.22570 0.94719 1.05194 1.00179 1.21730 0.93214 0.81472 0.93861 1.86596 1.75733 1.23627 1.50375 1.23011 0.98095 0.99805 0.97309 1.22400 0.97450 0.99534 0.96367 1.22646 0.99078 0.98168 0.95812 1.21524 0.89973 0.93209 0.92537 1.22113 1.00101 0.99898 0.99230 1.62302 1.28144 1.08337 1.25408 1.22405 0.97062 0.93283 0.94922 1.21681 0.95235 0.99263 0.98201 1.18677 0.95764 0.90343 0.92265 1.21222 0.93083 1.18495 1.21917 0.92850 1.24967 0.95666 0.96705 0.96671 1.69913 1.22517 1.26937 1.33798 0.86649 0.83717 0.79224 0.78810 1.20846 1.19976 1.21359 1.21612 0.93962 1.00874 0.97332 1.22379 0.98871 0.92133 0.94198 0.89133 0.94373 0.91331 0.78610 0.91747 0.90729 0.91659 0.91725 0.89910 0.91541 0.91858 0.92459 0.93452 0.95515 0.91410 0.93405 0.92741 0.95925 0.93192 0.93888 0.89905 0.95965 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 7.48 37.16 0.28 -1.97 16 2 C 0.14 1.77 1.20 -89.49 -0.11 1.67 16 3 O -0.56 -6.86 11.12 -35.23 -0.39 -7.25 16 4 C -0.14 -1.59 6.08 -25.07 -0.15 -1.74 16 5 C -0.12 -1.33 6.91 -24.74 -0.17 -1.51 16 6 C -0.12 -1.60 4.66 -25.07 -0.12 -1.71 16 7 C 0.12 1.74 0.60 -130.48 -0.08 1.66 16 8 C -0.15 -2.36 6.37 37.16 0.24 -2.12 16 9 N -0.52 -8.94 2.86 -217.73 -0.62 -9.57 16 10 C 0.05 0.92 3.65 -3.84 -0.01 0.91 16 11 C -0.11 -2.24 5.32 -26.66 -0.14 -2.38 16 12 C 0.05 1.20 2.08 -91.65 -0.19 1.01 16 13 C -0.51 -14.07 8.50 -34.44 -0.29 -14.36 16 14 H 0.05 1.47 7.75 -52.49 -0.41 1.06 16 15 C 0.06 1.69 5.34 -17.82 -0.10 1.60 16 16 N -0.89 -25.71 11.72 55.43 0.65 -25.06 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C -0.10 -2.32 5.18 -26.65 -0.14 -2.46 16 22 C 0.05 0.99 4.81 -3.83 -0.02 0.97 16 23 H 0.09 1.38 7.16 -51.93 -0.37 1.01 16 24 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 25 H 0.07 0.98 5.37 -51.93 -0.28 0.70 16 26 H 0.37 3.09 9.07 45.56 0.41 3.50 16 27 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 28 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.17 6.40 -51.93 -0.33 0.83 16 32 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 33 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 34 H 0.06 0.82 7.84 -51.93 -0.41 0.42 16 35 H 0.05 0.75 7.39 -51.93 -0.38 0.37 16 36 H 0.03 0.52 6.70 -51.93 -0.35 0.17 16 37 H 0.07 1.15 5.05 -51.92 -0.26 0.89 16 38 H 0.05 1.00 8.14 -51.92 -0.42 0.57 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 2.16 6.55 -51.93 -0.34 1.82 16 44 H 0.02 0.45 7.42 -51.93 -0.39 0.07 16 45 H 0.06 1.09 5.61 -51.93 -0.29 0.80 16 LS Contribution 322.37 15.07 4.86 4.86 Total: -1.00 -28.69 322.37 -8.58 -37.27 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.05 Total: 3.72 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -1.00 Total: -20.44 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.03 Total: -34.62 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.39 Total: -7.25 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.69 -8.58 -37.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.100 kcal (2) G-P(sol) polarization free energy of solvation -28.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds