Wall clock time and date at job start Mon Mar 30 2020 07:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 110.01692 * 2 1 4 4 C 1.54273 * 110.07016 * 121.41692 * 2 1 3 5 5 C 1.54889 * 104.19356 * 142.91705 * 4 2 1 6 6 C 1.54891 * 102.74660 * 322.05587 * 5 4 2 7 7 C 1.53876 * 110.03261 * 238.60569 * 2 1 3 8 8 C 1.53002 * 110.02962 * 121.33289 * 7 2 1 9 9 N 1.46908 * 110.03058 * 359.95296 * 7 2 1 10 10 C 1.46847 * 110.99990 * 78.74129 * 9 7 2 11 11 C 1.53030 * 109.52132 * 185.84042 * 10 9 7 12 12 C 1.53114 * 109.27661 * 300.81392 * 11 10 9 13 13 C 1.50700 * 109.52610 * 177.56212 * 12 11 10 14 14 H 1.08001 * 119.99827 * 354.82351 * 13 12 11 15 15 C 1.37882 * 120.00487 * 174.82003 * 13 12 11 16 16 N 1.31510 * 119.99869 * 0.96870 * 15 13 12 17 17 Si 1.86795 * 119.99888 * 180.69399 * 15 13 12 18 18 H 1.48501 * 109.47337 * 265.27984 * 17 15 13 19 19 H 1.48497 * 109.47512 * 25.28458 * 17 15 13 20 20 H 1.48502 * 109.47063 * 145.28375 * 17 15 13 21 21 C 1.53115 * 109.16172 * 57.65897 * 12 11 10 22 22 C 1.46844 * 110.99521 * 202.94902 * 9 7 2 23 23 H 1.09002 * 109.46884 * 168.30834 * 1 2 3 24 24 H 1.08993 * 109.47187 * 288.30740 * 1 2 3 25 25 H 1.08995 * 109.47097 * 48.30661 * 1 2 3 26 26 H 0.96704 * 113.99900 * 58.60215 * 3 2 1 27 27 H 1.08994 * 110.48111 * 261.59402 * 4 2 1 28 28 H 1.09001 * 110.48220 * 24.10404 * 4 2 1 29 29 H 1.09001 * 110.75401 * 80.36993 * 5 4 2 30 30 H 1.08994 * 110.75678 * 203.73955 * 5 4 2 31 31 H 1.08995 * 110.48752 * 279.26406 * 6 5 4 32 32 H 1.09003 * 110.48534 * 156.62170 * 6 5 4 33 33 H 1.08995 * 109.47199 * 299.30788 * 8 7 2 34 34 H 1.09001 * 109.46711 * 59.31162 * 8 7 2 35 35 H 1.08997 * 109.46982 * 179.30829 * 8 7 2 36 36 H 1.08998 * 109.46756 * 65.81716 * 10 9 7 37 37 H 1.09007 * 109.45755 * 305.85335 * 10 9 7 38 38 H 1.09007 * 109.50229 * 180.88154 * 11 10 9 39 39 H 1.08994 * 109.54421 * 60.77820 * 11 10 9 40 40 H 1.09002 * 109.52525 * 297.69114 * 12 11 10 41 41 H 0.96994 * 120.00078 * 179.72568 * 16 15 13 42 42 H 1.09006 * 109.50562 * 62.28238 * 21 12 11 43 43 H 1.09005 * 109.50870 * 182.40047 * 21 12 11 44 44 H 1.09003 * 109.46292 * 294.17164 * 22 9 7 45 45 H 1.09000 * 109.46770 * 54.14386 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0192 1.3427 0.0000 4 6 2.0595 -0.7553 1.2366 5 6 3.3150 -1.4997 0.7182 6 6 2.8884 -1.9397 -0.7043 7 6 2.0572 -0.7531 -1.2340 8 6 2.9390 0.1719 -2.0753 9 7 0.9328 -1.2466 -2.0405 10 6 0.3568 -0.1692 -2.8553 11 6 -0.8967 -0.6816 -3.5682 12 6 -0.5227 -1.8728 -4.4545 13 6 -1.7631 -2.4195 -5.1132 14 1 -2.7324 -2.0185 -4.8561 15 6 -1.6605 -3.4316 -6.0439 16 7 -0.4820 -3.9329 -6.3430 17 14 -3.1962 -4.0958 -6.8745 18 1 -3.6776 -5.2932 -6.1399 19 1 -4.2531 -3.0528 -6.8677 20 1 -2.8785 -4.4695 -8.2761 21 6 0.1191 -2.9610 -3.5895 22 6 1.3431 -2.3826 -2.8757 23 1 -0.3633 -1.0064 -0.2083 24 1 -0.3633 0.3228 0.9756 25 1 -0.3633 0.6835 -0.7673 26 1 1.7214 1.8698 0.7541 27 1 2.3306 -0.0534 2.0251 28 1 1.3149 -1.4647 1.5979 29 1 4.1718 -0.8274 0.6740 30 1 3.5347 -2.3667 1.3412 31 1 2.2788 -2.8420 -0.6578 32 1 3.7646 -2.1021 -1.3321 33 1 2.3516 1.0256 -2.4131 34 1 3.7765 0.5228 -1.4724 35 1 3.3171 -0.3738 -2.9398 36 1 1.0876 0.1572 -3.5951 37 1 0.0914 0.6701 -2.2123 38 1 -1.3151 0.1137 -4.1851 39 1 -1.6340 -0.9951 -2.8293 40 1 0.1838 -1.5502 -5.2193 41 1 -0.4103 -4.6476 -6.9948 42 1 -0.6016 -3.3106 -2.8502 43 1 0.4263 -3.7943 -4.2214 44 1 2.0694 -2.0458 -3.6156 45 1 1.7942 -3.1509 -2.2478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397164131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:40 Heat of formation + Delta-G solvation = -67.081230 kcal Electronic energy + Delta-G solvation = -22621.595644 eV Core-core repulsion = 19637.816198 eV Total energy + Delta-G solvation = -2983.779446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.59243 -38.71852 -36.24240 -35.01980 -33.13737 -32.17464 -31.00059 -29.92639 -27.52315 -26.94444 -25.13324 -23.80695 -23.17368 -21.47780 -20.51929 -19.34111 -18.46805 -17.25219 -16.96753 -16.71302 -16.54254 -15.68092 -15.47052 -14.91391 -14.67124 -14.47819 -14.33448 -14.06684 -13.85272 -13.56937 -13.33126 -13.12167 -12.97668 -12.83059 -12.67466 -12.46392 -12.25484 -12.10360 -12.03373 -11.82363 -11.80021 -11.58179 -11.55033 -11.38251 -11.15342 -10.76140 -10.62067 -10.50999 -10.33023 -9.04032 -8.08642 -6.20564 1.40578 1.41299 1.51982 2.44110 2.90147 3.19945 3.45814 3.56853 3.86810 4.01002 4.19155 4.27807 4.34261 4.36563 4.39876 4.47688 4.57235 4.58469 4.67908 4.78338 4.80597 4.87617 4.91413 4.94869 4.99475 5.02445 5.05713 5.12724 5.18380 5.22490 5.25747 5.28806 5.38634 5.44676 5.49620 5.58485 5.62393 5.68679 6.01697 6.03023 6.34147 6.40568 6.43751 6.91848 7.05549 7.47017 8.97793 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.035220 B = 0.005108 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.807982 B = 5480.243867 C = 5715.678049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.142 3.858 3 O -0.568 6.568 4 C -0.139 4.139 5 C -0.113 4.113 6 C -0.122 4.122 7 C 0.109 3.891 8 C -0.147 4.147 9 N -0.513 5.513 10 C 0.061 3.939 11 C -0.097 4.097 12 C 0.046 3.954 13 C -0.531 4.531 14 H 0.050 0.950 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.953 3.047 18 H -0.276 1.276 19 H -0.269 1.269 20 H -0.284 1.284 21 C -0.089 4.089 22 C 0.064 3.936 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.387 0.613 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.013 0.987 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.054 0.946 40 H -0.016 1.016 41 H 0.259 0.741 42 H 0.035 0.965 43 H 0.050 0.950 44 H 0.006 0.994 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 7.157 16.340 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.101 3.899 3 O -0.376 6.376 4 C -0.176 4.176 5 C -0.151 4.151 6 C -0.160 4.160 7 C 0.019 3.981 8 C -0.206 4.206 9 N -0.237 5.237 10 C -0.066 4.066 11 C -0.135 4.135 12 C 0.027 3.973 13 C -0.569 4.569 14 H 0.069 0.931 15 C -0.187 4.187 16 N -0.560 5.560 17 Si 0.779 3.221 18 H -0.201 1.201 19 H -0.193 1.193 20 H -0.210 1.210 21 C -0.127 4.127 22 C -0.063 4.063 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.236 0.764 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.032 0.968 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.002 0.998 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.024 0.976 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.586 6.665 15.986 18.529 hybrid contribution -0.405 -0.117 -1.271 1.339 sum 6.181 6.548 14.714 17.251 Atomic orbital electron populations 1.22493 0.95115 1.03536 1.01132 1.21597 0.92772 0.82008 0.93488 1.86550 1.75795 1.23435 1.51855 1.22986 0.97838 1.00013 0.96808 1.22387 0.97665 1.00304 0.94710 1.22650 0.98619 0.97163 0.97559 1.21745 0.89193 0.94203 0.92934 1.22030 1.00347 0.99316 0.98877 1.62285 1.29537 1.07505 1.24374 1.22274 0.95359 0.94025 0.94940 1.21536 0.96661 0.97676 0.97662 1.18638 0.94231 0.92236 0.92195 1.21583 0.93791 1.18889 1.22619 0.93139 1.25745 0.98622 0.96968 0.97321 1.70051 1.24446 1.27282 1.34210 0.85625 0.80128 0.78679 0.77717 1.20134 1.19307 1.21009 1.21361 0.95285 0.99476 0.96590 1.22139 0.96450 0.93513 0.94225 0.91204 0.91852 0.92711 0.76372 0.89449 0.90512 0.91165 0.90060 0.90711 0.91744 0.92940 0.91272 0.94994 0.96828 0.89224 0.93498 0.92738 0.99765 0.93159 0.94570 0.93124 0.97558 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 7.48 71.98 0.54 -3.45 16 2 C 0.14 3.26 1.20 -10.06 -0.01 3.25 16 3 O -0.57 -12.11 11.12 -148.98 -1.66 -13.77 16 4 C -0.14 -2.52 6.08 31.67 0.19 -2.33 16 5 C -0.11 -2.14 6.91 31.89 0.22 -1.92 16 6 C -0.12 -3.04 4.66 31.67 0.15 -2.90 16 7 C 0.11 3.06 0.60 4.25 0.00 3.06 16 8 C -0.15 -4.34 6.37 71.98 0.46 -3.88 16 9 N -0.51 -17.56 2.86 -842.76 -2.41 -19.97 16 10 C 0.06 2.25 3.65 86.32 0.31 2.57 16 11 C -0.10 -4.20 5.32 30.64 0.16 -4.04 16 12 C 0.05 2.37 2.08 -11.46 -0.02 2.35 16 13 C -0.53 -30.13 8.50 25.60 0.22 -29.91 16 14 H 0.05 2.82 7.75 -2.91 -0.02 2.80 16 15 C 0.01 0.66 5.34 84.66 0.45 1.11 16 16 N -0.92 -54.61 11.72 21.45 0.25 -54.36 16 17 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 C -0.09 -4.30 5.18 30.65 0.16 -4.14 16 22 C 0.06 2.53 4.81 86.33 0.42 2.95 16 23 H 0.07 2.00 7.16 -2.39 -0.02 1.98 16 24 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 25 H 0.05 1.46 5.37 -2.39 -0.01 1.44 16 26 H 0.39 4.98 9.07 -74.05 -0.67 4.31 16 27 H 0.09 1.23 8.06 -2.39 -0.02 1.21 16 28 H 0.08 1.40 7.85 -2.39 -0.02 1.38 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.98 6.40 -2.39 -0.02 1.97 16 32 H 0.06 1.61 7.84 -2.39 -0.02 1.60 16 33 H 0.05 1.64 6.33 -2.39 -0.02 1.63 16 34 H 0.07 1.86 7.84 -2.39 -0.02 1.84 16 35 H 0.03 1.01 7.39 -2.39 -0.02 0.99 16 36 H 0.01 0.53 6.70 -2.39 -0.02 0.52 16 37 H 0.09 2.94 5.05 -2.38 -0.01 2.93 16 38 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.95 16 41 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.05 2.76 6.55 -2.38 -0.02 2.75 16 44 H 0.01 0.26 7.42 -2.39 -0.02 0.25 16 45 H 0.08 2.90 5.61 -2.39 -0.01 2.89 16 Total: -1.00 -63.09 322.37 1.75 -61.34 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.29 Total: 17.43 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 3.24 Total: -37.29 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.16 Total: -74.33 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.66 Total: -13.77 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -63.09 1.75 -61.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397164131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.739 kcal (2) G-P(sol) polarization free energy of solvation -63.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds