Wall clock time and date at job start Mon Mar 30 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48504 * 109.47044 * 240.00214 * 3 2 1 5 5 H 1.48503 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47442 * 119.99740 * 3 2 1 7 7 C 1.37869 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.53126 * 109.52245 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.27580 * 177.55470 * 10 9 7 12 12 N 1.46843 * 109.52681 * 300.81989 * 11 10 9 13 13 C 1.46899 * 110.99958 * 185.84099 * 12 11 10 14 14 C 1.53000 * 109.47246 * 75.90249 * 13 12 11 15 15 H 1.08998 * 109.46894 * 305.25526 * 14 13 12 16 16 C 1.52997 * 109.47237 * 65.25143 * 14 13 12 17 17 C 1.53007 * 109.46965 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47107 * 300.00371 * 17 16 14 19 19 C 1.53001 * 109.47183 * 60.00085 * 18 17 16 20 20 H 1.09000 * 109.46639 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.47007 * 59.99941 * 19 18 17 22 22 C 1.52990 * 109.46960 * 299.99755 * 19 18 17 23 23 C 1.46840 * 111.19859 * 61.74317 * 12 11 10 24 24 C 1.53040 * 109.52576 * 298.25806 * 23 12 11 25 25 H 0.96997 * 120.00380 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.57956 * 59.83834 * 9 7 2 27 27 H 1.08996 * 109.50473 * 57.61516 * 10 9 7 28 28 H 1.09000 * 109.53561 * 297.51436 * 10 9 7 29 29 H 1.09001 * 109.45816 * 180.80042 * 11 10 9 30 30 H 1.08998 * 109.46178 * 60.84300 * 11 10 9 31 31 H 1.09000 * 109.47115 * 195.89741 * 13 12 11 32 32 H 1.08998 * 109.47328 * 315.89702 * 13 12 11 33 33 H 1.08993 * 109.47305 * 300.00234 * 16 14 13 34 34 H 1.08998 * 109.46866 * 60.00366 * 16 14 13 35 35 H 1.08998 * 109.47024 * 60.00470 * 17 16 14 36 36 H 1.08997 * 109.46649 * 180.02562 * 17 16 14 37 37 H 1.09006 * 109.46695 * 180.02562 * 18 17 16 38 38 H 1.08998 * 109.47259 * 299.99955 * 18 17 16 39 39 H 0.96702 * 114.00321 * 60.00027 * 21 19 18 40 40 H 1.09004 * 109.47507 * 300.00331 * 22 19 18 41 41 H 1.09001 * 109.47270 * 180.02562 * 22 19 18 42 42 H 1.09002 * 109.46411 * 58.27192 * 23 12 11 43 43 H 1.08995 * 109.46567 * 178.24127 * 23 12 11 44 44 H 1.08994 * 109.50434 * 299.24430 * 24 23 12 45 45 H 1.08999 * 109.54131 * 179.13961 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2451 -3.6638 0.0005 11 6 1.4752 -4.9850 0.0622 12 7 0.6545 -5.0185 1.2794 13 6 0.0083 -6.3276 1.4427 14 6 1.0382 -7.3470 1.9338 15 1 1.8893 -7.3604 1.2530 16 6 1.5124 -6.9581 3.3355 17 6 2.5418 -7.9779 3.8268 18 6 1.9022 -9.3670 3.8719 19 6 1.4280 -9.7559 2.4701 20 1 0.9719 -10.7454 2.5024 21 8 2.5439 -9.7741 1.5778 22 6 0.3987 -8.7362 1.9789 23 6 -0.3392 -3.9375 1.2797 24 6 0.3764 -2.5849 1.2544 25 1 -0.4850 0.8400 -0.0004 26 1 0.6219 -2.5576 -0.8876 27 1 2.8999 -3.5834 0.8682 28 1 2.8427 -3.6330 -0.9105 29 1 2.1806 -5.8159 0.0767 30 1 0.8310 -5.0711 -0.8128 31 1 -0.7983 -6.2463 2.1713 32 1 -0.3982 -6.6541 0.4856 33 1 1.9677 -5.9683 3.3034 34 1 0.6613 -6.9447 4.0163 35 1 3.3930 -7.9918 3.1461 36 1 2.8793 -7.7011 4.8256 37 1 2.6355 -10.0935 4.2223 38 1 1.0510 -9.3532 4.5526 39 1 3.2376 -10.3996 1.8280 40 1 -0.4526 -8.7223 2.6596 41 1 0.0604 -9.0134 0.9805 42 1 -0.9751 -4.0284 0.3990 43 1 -0.9518 -4.0075 2.1784 44 1 1.0018 -2.4875 2.1417 45 1 -0.3612 -1.7825 1.2392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397169424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:11 Heat of formation + Delta-G solvation = -81.082386 kcal Electronic energy + Delta-G solvation = -21511.024642 eV Core-core repulsion = 18526.638061 eV Total energy + Delta-G solvation = -2984.386581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.48201 -37.94687 -35.42339 -33.72658 -31.87684 -30.52490 -29.82645 -29.40382 -26.26269 -24.23014 -22.47772 -22.22725 -21.58281 -20.51641 -19.55339 -18.47360 -16.88069 -16.32095 -15.72699 -15.30916 -14.78515 -14.44428 -14.31886 -13.90801 -13.68657 -13.21303 -12.86245 -12.62445 -12.46682 -12.39088 -12.17777 -11.86366 -11.66479 -11.45226 -11.20799 -10.92233 -10.85184 -10.73679 -10.69330 -10.43261 -10.28313 -10.08341 -9.95164 -9.83164 -9.66821 -9.35612 -8.84357 -8.64037 -8.22940 -7.60651 -5.91452 -3.96595 3.36620 3.40783 3.43909 4.14497 4.43422 4.50242 4.66710 4.73380 4.88195 5.12976 5.27951 5.38540 5.41308 5.47680 5.52503 5.55435 5.71633 5.77738 5.83086 5.89910 5.98670 6.00699 6.01757 6.18800 6.25408 6.26596 6.29228 6.39616 6.44593 6.66105 6.68086 6.68891 6.75705 6.95755 7.17388 7.26348 7.52360 7.54392 7.71964 7.81889 7.92526 8.12991 8.23451 8.55272 9.07006 9.67402 11.14679 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038681 B = 0.003890 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.688875 B = 7196.111619 C = 7315.221099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.532 5.532 13 C 0.057 3.943 14 C -0.074 4.074 15 H 0.079 0.921 16 C -0.104 4.104 17 C -0.116 4.116 18 C -0.151 4.151 19 C 0.107 3.893 20 H 0.048 0.952 21 O -0.561 6.561 22 C -0.108 4.108 23 C 0.058 3.942 24 C -0.103 4.103 25 H 0.259 0.741 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.026 0.974 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.372 0.628 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.020 0.980 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.956 -19.061 6.619 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.067 4.067 12 N -0.256 5.256 13 C -0.072 4.072 14 C -0.093 4.093 15 H 0.097 0.903 16 C -0.142 4.142 17 C -0.153 4.153 18 C -0.189 4.189 19 C 0.048 3.952 20 H 0.066 0.934 21 O -0.366 6.366 22 C -0.146 4.146 23 C -0.069 4.069 24 C -0.141 4.141 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.218 0.782 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.739 -18.380 6.708 19.580 hybrid contribution 0.133 0.291 -0.344 0.470 sum 0.872 -18.089 6.364 19.196 Atomic orbital electron populations 1.69872 1.05854 1.26317 1.51187 1.24962 0.94825 0.98939 0.95275 0.86705 0.79622 0.83375 0.78546 1.20409 1.21411 1.20327 1.21189 0.92840 0.90743 1.50006 0.92851 1.18678 0.92725 0.91718 0.93942 1.21668 0.98672 0.93874 1.00126 1.22138 0.95931 0.99108 0.89556 1.61929 1.23628 1.01909 1.38144 1.22142 0.95898 0.90173 0.98941 1.21018 0.98526 0.91980 0.97800 0.90277 1.21451 0.98049 0.99430 0.95246 1.21467 0.99108 0.93993 1.00775 1.22251 1.00964 0.98303 0.97366 1.21754 0.87303 0.97487 0.88639 0.93372 1.86577 1.31783 1.65735 1.52473 1.21586 0.96653 0.94865 1.01514 1.22267 0.93067 0.93207 0.98389 1.21645 1.00120 0.93029 0.99331 0.93118 0.96265 0.92581 0.93408 0.92311 0.96129 0.91781 0.95566 0.90203 0.92997 0.91554 0.92555 0.92344 0.91329 0.78183 0.90955 0.91696 0.96218 0.92851 0.93895 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 11.37 55.43 0.63 -25.20 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.29 8.56 -34.45 -0.29 -14.59 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.22 2.16 -91.64 -0.20 1.03 16 10 C -0.11 -2.31 5.32 -26.65 -0.14 -2.45 16 11 C 0.06 1.15 5.29 -3.83 -0.02 1.13 16 12 N -0.53 -9.68 4.05 -234.68 -0.95 -10.63 16 13 C 0.06 0.85 4.39 -3.82 -0.02 0.84 16 14 C -0.07 -0.98 2.10 -90.62 -0.19 -1.17 16 15 H 0.08 1.21 6.24 -51.93 -0.32 0.88 16 16 C -0.10 -1.33 5.09 -26.73 -0.14 -1.47 16 17 C -0.12 -1.25 5.78 -26.73 -0.15 -1.41 16 18 C -0.15 -1.33 5.64 -26.73 -0.15 -1.48 16 19 C 0.11 1.02 3.77 -26.74 -0.10 0.92 16 20 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 21 O -0.56 -5.84 11.97 -35.23 -0.42 -6.26 16 22 C -0.11 -1.18 4.94 -26.74 -0.13 -1.31 16 23 C 0.06 1.17 5.43 -3.84 -0.02 1.15 16 24 C -0.10 -2.49 5.12 -26.65 -0.14 -2.62 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.03 6.65 -51.93 -0.35 0.68 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.91 7.79 -51.93 -0.40 0.51 16 32 H 0.03 0.40 8.00 -51.93 -0.42 -0.02 16 33 H 0.08 1.22 7.76 -51.93 -0.40 0.81 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.37 2.34 9.08 45.56 0.41 2.75 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 44 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -29.46 336.36 -10.13 -39.59 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.65 Total: 0.67 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -1.79 Total: -19.84 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.32 Total: -35.84 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.42 Total: -6.26 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.46 -10.13 -39.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397169424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.494 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds