Wall clock time and date at job start Mon Mar 30 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48504 * 109.47044 * 240.00214 * 3 2 1 5 5 H 1.48503 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47442 * 119.99740 * 3 2 1 7 7 C 1.37869 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.53126 * 109.52245 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.27580 * 177.55470 * 10 9 7 12 12 N 1.46843 * 109.52681 * 300.81989 * 11 10 9 13 13 C 1.46899 * 110.99958 * 185.84099 * 12 11 10 14 14 C 1.53000 * 109.47246 * 75.90249 * 13 12 11 15 15 H 1.08998 * 109.46894 * 305.25526 * 14 13 12 16 16 C 1.52997 * 109.47237 * 65.25143 * 14 13 12 17 17 C 1.53007 * 109.46965 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47107 * 300.00371 * 17 16 14 19 19 C 1.53001 * 109.47183 * 60.00085 * 18 17 16 20 20 H 1.09000 * 109.46639 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.47007 * 59.99941 * 19 18 17 22 22 C 1.52990 * 109.46960 * 299.99755 * 19 18 17 23 23 C 1.46840 * 111.19859 * 61.74317 * 12 11 10 24 24 C 1.53040 * 109.52576 * 298.25806 * 23 12 11 25 25 H 0.96997 * 120.00380 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.57956 * 59.83834 * 9 7 2 27 27 H 1.08996 * 109.50473 * 57.61516 * 10 9 7 28 28 H 1.09000 * 109.53561 * 297.51436 * 10 9 7 29 29 H 1.09001 * 109.45816 * 180.80042 * 11 10 9 30 30 H 1.08998 * 109.46178 * 60.84300 * 11 10 9 31 31 H 1.09000 * 109.47115 * 195.89741 * 13 12 11 32 32 H 1.08998 * 109.47328 * 315.89702 * 13 12 11 33 33 H 1.08993 * 109.47305 * 300.00234 * 16 14 13 34 34 H 1.08998 * 109.46866 * 60.00366 * 16 14 13 35 35 H 1.08998 * 109.47024 * 60.00470 * 17 16 14 36 36 H 1.08997 * 109.46649 * 180.02562 * 17 16 14 37 37 H 1.09006 * 109.46695 * 180.02562 * 18 17 16 38 38 H 1.08998 * 109.47259 * 299.99955 * 18 17 16 39 39 H 0.96702 * 114.00321 * 60.00027 * 21 19 18 40 40 H 1.09004 * 109.47507 * 300.00331 * 22 19 18 41 41 H 1.09001 * 109.47270 * 180.02562 * 22 19 18 42 42 H 1.09002 * 109.46411 * 58.27192 * 23 12 11 43 43 H 1.08995 * 109.46567 * 178.24127 * 23 12 11 44 44 H 1.08994 * 109.50434 * 299.24430 * 24 23 12 45 45 H 1.08999 * 109.54131 * 179.13961 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2451 -3.6638 0.0005 11 6 1.4752 -4.9850 0.0622 12 7 0.6545 -5.0185 1.2794 13 6 0.0083 -6.3276 1.4427 14 6 1.0382 -7.3470 1.9338 15 1 1.8893 -7.3604 1.2530 16 6 1.5124 -6.9581 3.3355 17 6 2.5418 -7.9779 3.8268 18 6 1.9022 -9.3670 3.8719 19 6 1.4280 -9.7559 2.4701 20 1 0.9719 -10.7454 2.5024 21 8 2.5439 -9.7741 1.5778 22 6 0.3987 -8.7362 1.9789 23 6 -0.3392 -3.9375 1.2797 24 6 0.3764 -2.5849 1.2544 25 1 -0.4850 0.8400 -0.0004 26 1 0.6219 -2.5576 -0.8876 27 1 2.8999 -3.5834 0.8682 28 1 2.8427 -3.6330 -0.9105 29 1 2.1806 -5.8159 0.0767 30 1 0.8310 -5.0711 -0.8128 31 1 -0.7983 -6.2463 2.1713 32 1 -0.3982 -6.6541 0.4856 33 1 1.9677 -5.9683 3.3034 34 1 0.6613 -6.9447 4.0163 35 1 3.3930 -7.9918 3.1461 36 1 2.8793 -7.7011 4.8256 37 1 2.6355 -10.0935 4.2223 38 1 1.0510 -9.3532 4.5526 39 1 3.2376 -10.3996 1.8280 40 1 -0.4526 -8.7223 2.6596 41 1 0.0604 -9.0134 0.9805 42 1 -0.9751 -4.0284 0.3990 43 1 -0.9518 -4.0075 2.1784 44 1 1.0018 -2.4875 2.1417 45 1 -0.3612 -1.7825 1.2392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397169424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:11 Heat of formation + Delta-G solvation = -99.558254 kcal Electronic energy + Delta-G solvation = -21511.825816 eV Core-core repulsion = 18526.638061 eV Total energy + Delta-G solvation = -2985.187755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51928 -39.36110 -36.55792 -35.31662 -33.47751 -31.90039 -31.33240 -30.51844 -27.96789 -25.75769 -23.90558 -23.41763 -23.14040 -21.64101 -20.50012 -20.32180 -18.43925 -17.62538 -16.88374 -16.58006 -16.38594 -15.86753 -15.35702 -15.26371 -14.90215 -14.80711 -14.34220 -14.27336 -14.04489 -13.52083 -13.22530 -13.03950 -13.01814 -12.80305 -12.79193 -12.53936 -12.34852 -12.19725 -12.01366 -11.86805 -11.78808 -11.56243 -11.35469 -11.26145 -10.88322 -10.70140 -10.65121 -10.46444 -10.34868 -9.11593 -8.07213 -6.20896 1.41505 1.43125 1.50710 2.44374 3.05354 3.19436 3.49899 3.80034 3.89893 4.03135 4.19861 4.22757 4.30932 4.33337 4.47764 4.50292 4.55180 4.62828 4.67598 4.71268 4.74270 4.79468 4.87914 4.91457 4.95454 4.97900 5.09327 5.13515 5.16656 5.24329 5.31063 5.36284 5.39410 5.45235 5.56157 5.61447 5.65402 5.69777 6.01066 6.04696 6.34242 6.38398 6.41855 6.90086 7.02170 7.46681 8.97267 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038681 B = 0.003890 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.688875 B = 7196.111619 C = 7315.221099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.044 3.956 10 C -0.098 4.098 11 C 0.069 3.931 12 N -0.534 5.534 13 C 0.057 3.943 14 C -0.066 4.066 15 H 0.057 0.943 16 C -0.102 4.102 17 C -0.114 4.114 18 C -0.145 4.145 19 C 0.107 3.893 20 H 0.070 0.930 21 O -0.583 6.583 22 C -0.108 4.108 23 C 0.069 3.931 24 C -0.093 4.093 25 H 0.260 0.740 26 H -0.014 1.014 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.015 0.985 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.389 0.611 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.011 0.989 43 H 0.074 0.926 44 H 0.030 0.970 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -20.831 7.689 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.136 4.136 11 C -0.058 4.058 12 N -0.259 5.259 13 C -0.070 4.070 14 C -0.085 4.085 15 H 0.075 0.925 16 C -0.140 4.140 17 C -0.151 4.151 18 C -0.182 4.182 19 C 0.048 3.952 20 H 0.087 0.913 21 O -0.391 6.391 22 C -0.146 4.146 23 C -0.059 4.059 24 C -0.131 4.131 25 H 0.069 0.931 26 H 0.004 0.996 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.033 0.967 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.238 0.762 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.029 0.971 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.014 -20.177 7.783 21.650 hybrid contribution 0.058 0.840 -0.692 1.090 sum 1.072 -19.337 7.091 20.624 Atomic orbital electron populations 1.70012 1.07150 1.27121 1.51460 1.25741 0.95696 1.02333 0.94787 0.85680 0.78444 0.79143 0.78786 1.19760 1.20830 1.19667 1.21554 0.92961 0.92294 1.50518 0.93193 1.18655 0.93141 0.92555 0.93067 1.21528 0.97981 0.94107 0.99944 1.22009 0.96075 0.97957 0.89802 1.61896 1.23378 1.03073 1.37526 1.22257 0.96708 0.88603 0.99458 1.20908 0.97263 0.92980 0.97323 0.92451 1.21395 0.98705 0.98546 0.95307 1.21425 0.98207 0.94909 1.00584 1.22215 1.01665 0.97107 0.97253 1.21798 0.86883 0.97943 0.88568 0.91252 1.86536 1.32676 1.66715 1.53186 1.21607 0.97590 0.93526 1.01913 1.22051 0.92977 0.91871 0.98983 1.21400 0.99094 0.94685 0.97962 0.93071 0.99583 0.93124 0.93206 0.90322 0.96652 0.90494 0.95495 0.93193 0.92213 0.92791 0.91984 0.90410 0.90353 0.76240 0.89351 0.92165 0.97066 0.90809 0.95103 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.37 11.37 21.44 0.24 -54.12 16 2 C 0.01 0.73 5.31 84.65 0.45 1.18 16 3 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -30.80 8.56 25.60 0.22 -30.58 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.04 2.35 2.16 -11.46 -0.02 2.32 16 10 C -0.10 -4.34 5.32 30.65 0.16 -4.18 16 11 C 0.07 2.63 5.29 86.33 0.46 3.08 16 12 N -0.53 -19.22 4.05 -896.39 -3.63 -22.85 16 13 C 0.06 1.64 4.39 86.30 0.38 2.02 16 14 C -0.07 -1.63 2.10 -10.79 -0.02 -1.66 16 15 H 0.06 1.69 6.24 -2.39 -0.01 1.67 16 16 C -0.10 -2.46 5.09 30.60 0.16 -2.31 16 17 C -0.11 -2.24 5.78 30.60 0.18 -2.06 16 18 C -0.14 -2.07 5.64 30.59 0.17 -1.89 16 19 C 0.11 1.69 3.77 30.59 0.12 1.81 16 20 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 21 O -0.58 -10.82 11.97 -148.98 -1.78 -12.60 16 22 C -0.11 -2.09 4.94 30.59 0.15 -1.93 16 23 C 0.07 2.79 5.43 86.33 0.47 3.26 16 24 C -0.09 -4.63 5.12 30.65 0.16 -4.47 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 26 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 27 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.08 2.69 6.65 -2.39 -0.02 2.67 16 30 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 2.02 7.79 -2.39 -0.02 2.00 16 32 H 0.03 0.78 8.00 -2.39 -0.02 0.76 16 33 H 0.05 1.50 7.76 -2.39 -0.02 1.48 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.19 7.68 -2.39 -0.02 1.17 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.39 3.93 9.08 -74.06 -0.67 3.26 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 44 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.06 3.40 6.17 -2.39 -0.01 3.38 16 Total: -1.00 -64.45 336.36 0.14 -64.31 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.26 Total: 13.87 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 3.02 Total: -35.41 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -3.38 Total: -76.97 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.78 Total: -12.60 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.45 0.14 -64.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397169424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.244 kcal (2) G-P(sol) polarization free energy of solvation -64.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds