Wall clock time and date at job start Mon Mar 30 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48500 * 109.46959 * 269.99875 * 3 2 1 5 5 H 1.48504 * 109.46962 * 30.00146 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00022 * 3 2 1 7 7 C 1.37882 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.53117 * 109.51980 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.28142 * 182.43596 * 10 9 7 12 12 N 1.46854 * 109.52052 * 59.17732 * 11 10 9 13 13 C 1.46897 * 111.00043 * 174.16505 * 12 11 10 14 14 C 1.52995 * 109.47219 * 176.21986 * 13 12 11 15 15 H 1.08997 * 109.47316 * 301.94907 * 14 13 12 16 16 C 1.53005 * 109.47120 * 181.95113 * 14 13 12 17 17 C 1.53000 * 109.46831 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47383 * 60.00251 * 17 16 14 19 19 C 1.53005 * 109.46932 * 299.99687 * 18 17 16 20 20 H 1.08997 * 109.46858 * 300.00059 * 19 18 17 21 21 O 1.42898 * 109.47118 * 180.02562 * 19 18 17 22 22 C 1.53000 * 109.46831 * 59.99975 * 19 18 17 23 23 C 1.46848 * 111.19375 * 298.25944 * 12 11 10 24 24 C 1.53031 * 109.52589 * 61.74599 * 23 12 11 25 25 H 0.97003 * 120.00275 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.57098 * 300.15146 * 9 7 2 27 27 H 1.09005 * 109.50675 * 62.49584 * 10 9 7 28 28 H 1.08999 * 109.53959 * 302.39659 * 10 9 7 29 29 H 1.09003 * 109.46053 * 299.16209 * 11 10 9 30 30 H 1.09001 * 109.46617 * 179.19438 * 11 10 9 31 31 H 1.09004 * 109.47118 * 56.21511 * 13 12 11 32 32 H 1.09004 * 109.46914 * 296.22228 * 13 12 11 33 33 H 1.08996 * 109.47134 * 60.00227 * 16 14 13 34 34 H 1.09006 * 109.46761 * 300.00007 * 16 14 13 35 35 H 1.09004 * 109.46833 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47331 * 299.99626 * 17 16 14 37 37 H 1.08997 * 109.47397 * 59.99416 * 18 17 16 38 38 H 1.08996 * 109.47466 * 179.97438 * 18 17 16 39 39 H 0.96694 * 114.00025 * 60.00201 * 21 19 18 40 40 H 1.09004 * 109.46833 * 180.02562 * 22 19 18 41 41 H 1.08997 * 109.47331 * 60.00374 * 22 19 18 42 42 H 1.09001 * 109.45939 * 181.75944 * 23 12 11 43 43 H 1.08997 * 109.46590 * 301.72598 * 23 12 11 44 44 H 1.08995 * 109.50640 * 180.87316 * 24 23 12 45 45 H 1.09002 * 109.53732 * 60.77586 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4751 -4.9851 -0.0609 12 7 0.6542 -5.0187 -1.2781 13 6 0.0079 -6.3277 -1.4413 14 6 -0.9102 -6.2942 -2.6647 15 1 -1.6512 -5.5043 -2.5414 16 6 -1.6204 -7.6420 -2.8064 17 6 -2.5380 -7.6086 -4.0303 18 6 -1.7055 -7.3365 -5.2848 19 6 -0.9953 -5.9887 -5.1430 20 1 -1.7363 -5.1988 -5.0202 21 8 -0.2182 -5.7341 -6.3149 22 6 -0.0777 -6.0220 -3.9192 23 6 -0.3395 -3.9375 -1.2782 24 6 0.3761 -2.5850 -1.2531 25 1 -0.4851 0.8400 0.0004 26 1 0.6213 -2.5572 0.8884 27 1 2.8421 -3.6327 0.9119 28 1 2.9002 -3.5839 -0.8668 29 1 0.8309 -5.0711 0.8142 30 1 2.1804 -5.8161 -0.0755 31 1 -0.5797 -6.5562 -0.5521 32 1 0.7702 -7.0945 -1.5799 33 1 -2.2132 -7.8361 -1.9126 34 1 -0.8794 -8.4319 -2.9297 35 1 -3.0436 -8.5690 -4.1315 36 1 -3.2790 -6.8188 -3.9074 37 1 -0.9645 -8.1264 -5.4076 38 1 -2.3591 -7.3132 -6.1567 39 1 -0.7364 -5.6992 -7.1305 40 1 0.4279 -5.0616 -3.8179 41 1 0.6633 -6.8119 -4.0420 42 1 -0.9523 -4.0075 -2.1769 43 1 -0.9753 -4.0283 -0.3974 44 1 -0.3619 -1.7830 -1.2375 45 1 1.0013 -2.4870 -2.1406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397169426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:14 Heat of formation + Delta-G solvation = -79.629132 kcal Electronic energy + Delta-G solvation = -21581.518257 eV Core-core repulsion = 18597.194694 eV Total energy + Delta-G solvation = -2984.323563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.50884 -37.88819 -35.78422 -33.89235 -31.95769 -30.18326 -29.73243 -29.50934 -26.31478 -24.27592 -22.45453 -22.30343 -21.65988 -20.58310 -19.58095 -18.48091 -17.05705 -16.34647 -15.52393 -15.26576 -14.74844 -14.53414 -14.39024 -14.16763 -13.72319 -13.33626 -12.85905 -12.76275 -12.51478 -12.40565 -12.02989 -12.00345 -11.66056 -11.32955 -11.20481 -11.03087 -10.88435 -10.68840 -10.61739 -10.46137 -10.35651 -10.14657 -10.07545 -9.90475 -9.71444 -9.34234 -8.89763 -8.62390 -8.24280 -7.64977 -5.92743 -3.97699 3.34725 3.41087 3.44598 4.13959 4.40038 4.49430 4.65938 4.72985 4.92524 5.09328 5.19731 5.31458 5.37179 5.37910 5.48219 5.54072 5.66736 5.72932 5.81145 5.82817 5.90713 5.98105 6.04391 6.09808 6.10737 6.15754 6.22676 6.30124 6.38555 6.51226 6.61067 6.69540 6.71522 6.92290 7.14553 7.23875 7.50714 7.65303 7.68962 7.77665 7.89694 8.11133 8.21835 8.53935 9.06015 9.66439 11.13437 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.004464 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.864087 B = 6270.580348 C = 6765.499173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.532 5.532 13 C 0.061 3.939 14 C -0.085 4.085 15 H 0.076 0.924 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.150 4.150 19 C 0.102 3.898 20 H 0.052 0.948 21 O -0.566 6.566 22 C -0.097 4.097 23 C 0.053 3.947 24 C -0.104 4.104 25 H 0.258 0.742 26 H 0.019 0.981 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.022 0.978 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.372 0.628 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.019 0.981 44 H 0.091 0.909 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 -15.199 -7.989 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.257 5.257 13 C -0.067 4.067 14 C -0.104 4.104 15 H 0.095 0.905 16 C -0.154 4.154 17 C -0.153 4.153 18 C -0.188 4.188 19 C 0.043 3.957 20 H 0.070 0.930 21 O -0.371 6.371 22 C -0.135 4.135 23 C -0.074 4.074 24 C -0.142 4.142 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.218 0.782 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.109 0.891 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.785 -14.984 -7.925 17.613 hybrid contribution -0.656 0.718 0.296 1.017 sum -5.441 -14.266 -7.629 17.068 Atomic orbital electron populations 1.69879 1.05865 1.26210 1.51268 1.24961 0.94821 0.98957 0.95253 0.86647 0.79889 0.83704 0.78060 1.20728 1.21369 1.20005 1.21226 0.92881 0.90719 1.49910 0.92790 1.18681 0.92710 0.91722 0.93966 1.21671 0.98699 0.93802 1.00212 1.22096 0.95772 0.99182 0.89616 1.62034 1.23597 1.02039 1.38067 1.22085 0.96270 0.92668 0.95711 1.21225 0.97296 0.97227 0.94660 0.90531 1.21606 0.98560 0.97573 0.97674 1.21452 0.97885 1.01545 0.94403 1.22275 0.99459 0.99020 0.98043 1.21909 0.92991 0.94604 0.86161 0.92980 1.86566 1.38643 1.94814 1.17104 1.21395 0.97265 1.04212 0.90600 1.22357 0.93321 0.93120 0.98631 1.21650 1.00144 0.93075 0.99339 0.93174 0.96261 0.93327 0.92492 0.95980 0.92589 0.95589 0.91424 0.91951 0.91878 0.91954 0.91886 0.91325 0.92266 0.78203 0.89471 0.91778 0.92168 0.96254 0.89114 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 11.37 55.43 0.63 -25.09 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.22 8.56 -34.44 -0.29 -14.52 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 11 C 0.06 1.12 5.46 -3.83 -0.02 1.10 16 12 N -0.53 -9.51 4.08 -234.67 -0.96 -10.46 16 13 C 0.06 0.88 4.54 -3.83 -0.02 0.86 16 14 C -0.09 -1.09 1.70 -90.62 -0.15 -1.24 16 15 H 0.08 1.05 6.07 -51.93 -0.32 0.74 16 16 C -0.12 -1.18 5.20 -26.73 -0.14 -1.32 16 17 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 18 C -0.15 -1.42 5.55 -26.73 -0.15 -1.57 16 19 C 0.10 1.21 3.47 -26.73 -0.09 1.12 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 O -0.57 -7.05 13.32 -35.23 -0.47 -7.52 16 22 C -0.10 -1.33 4.64 -26.73 -0.12 -1.46 16 23 C 0.05 1.04 4.96 -3.84 -0.02 1.02 16 24 C -0.10 -2.49 5.12 -26.66 -0.14 -2.62 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.37 2.90 9.08 45.56 0.41 3.31 16 40 H 0.09 1.46 7.54 -51.93 -0.39 1.07 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.09 5.70 -51.93 -0.30 0.80 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 45 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -29.55 336.57 -10.12 -39.67 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.64 Total: 1.40 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.74 Total: -19.64 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.33 Total: -35.55 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.47 Total: -7.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.55 -10.12 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397169426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.956 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds