Wall clock time and date at job start Mon Mar 30 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48500 * 109.46959 * 269.99875 * 3 2 1 5 5 H 1.48504 * 109.46962 * 30.00146 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00022 * 3 2 1 7 7 C 1.37882 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.53117 * 109.51980 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.28142 * 182.43596 * 10 9 7 12 12 N 1.46854 * 109.52052 * 59.17732 * 11 10 9 13 13 C 1.46897 * 111.00043 * 174.16505 * 12 11 10 14 14 C 1.52995 * 109.47219 * 176.21986 * 13 12 11 15 15 H 1.08997 * 109.47316 * 301.94907 * 14 13 12 16 16 C 1.53005 * 109.47120 * 181.95113 * 14 13 12 17 17 C 1.53000 * 109.46831 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47383 * 60.00251 * 17 16 14 19 19 C 1.53005 * 109.46932 * 299.99687 * 18 17 16 20 20 H 1.08997 * 109.46858 * 300.00059 * 19 18 17 21 21 O 1.42898 * 109.47118 * 180.02562 * 19 18 17 22 22 C 1.53000 * 109.46831 * 59.99975 * 19 18 17 23 23 C 1.46848 * 111.19375 * 298.25944 * 12 11 10 24 24 C 1.53031 * 109.52589 * 61.74599 * 23 12 11 25 25 H 0.97003 * 120.00275 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.57098 * 300.15146 * 9 7 2 27 27 H 1.09005 * 109.50675 * 62.49584 * 10 9 7 28 28 H 1.08999 * 109.53959 * 302.39659 * 10 9 7 29 29 H 1.09003 * 109.46053 * 299.16209 * 11 10 9 30 30 H 1.09001 * 109.46617 * 179.19438 * 11 10 9 31 31 H 1.09004 * 109.47118 * 56.21511 * 13 12 11 32 32 H 1.09004 * 109.46914 * 296.22228 * 13 12 11 33 33 H 1.08996 * 109.47134 * 60.00227 * 16 14 13 34 34 H 1.09006 * 109.46761 * 300.00007 * 16 14 13 35 35 H 1.09004 * 109.46833 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47331 * 299.99626 * 17 16 14 37 37 H 1.08997 * 109.47397 * 59.99416 * 18 17 16 38 38 H 1.08996 * 109.47466 * 179.97438 * 18 17 16 39 39 H 0.96694 * 114.00025 * 60.00201 * 21 19 18 40 40 H 1.09004 * 109.46833 * 180.02562 * 22 19 18 41 41 H 1.08997 * 109.47331 * 60.00374 * 22 19 18 42 42 H 1.09001 * 109.45939 * 181.75944 * 23 12 11 43 43 H 1.08997 * 109.46590 * 301.72598 * 23 12 11 44 44 H 1.08995 * 109.50640 * 180.87316 * 24 23 12 45 45 H 1.09002 * 109.53732 * 60.77586 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4751 -4.9851 -0.0609 12 7 0.6542 -5.0187 -1.2781 13 6 0.0079 -6.3277 -1.4413 14 6 -0.9102 -6.2942 -2.6647 15 1 -1.6512 -5.5043 -2.5414 16 6 -1.6204 -7.6420 -2.8064 17 6 -2.5380 -7.6086 -4.0303 18 6 -1.7055 -7.3365 -5.2848 19 6 -0.9953 -5.9887 -5.1430 20 1 -1.7363 -5.1988 -5.0202 21 8 -0.2182 -5.7341 -6.3149 22 6 -0.0777 -6.0220 -3.9192 23 6 -0.3395 -3.9375 -1.2782 24 6 0.3761 -2.5850 -1.2531 25 1 -0.4851 0.8400 0.0004 26 1 0.6213 -2.5572 0.8884 27 1 2.8421 -3.6327 0.9119 28 1 2.9002 -3.5839 -0.8668 29 1 0.8309 -5.0711 0.8142 30 1 2.1804 -5.8161 -0.0755 31 1 -0.5797 -6.5562 -0.5521 32 1 0.7702 -7.0945 -1.5799 33 1 -2.2132 -7.8361 -1.9126 34 1 -0.8794 -8.4319 -2.9297 35 1 -3.0436 -8.5690 -4.1315 36 1 -3.2790 -6.8188 -3.9074 37 1 -0.9645 -8.1264 -5.4076 38 1 -2.3591 -7.3132 -6.1567 39 1 -0.7364 -5.6992 -7.1305 40 1 0.4279 -5.0616 -3.8179 41 1 0.6633 -6.8119 -4.0420 42 1 -0.9523 -4.0075 -2.1769 43 1 -0.9753 -4.0283 -0.3974 44 1 -0.3619 -1.7830 -1.2375 45 1 1.0013 -2.4870 -2.1406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397169426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:13 Heat of formation + Delta-G solvation = -98.558306 kcal Electronic energy + Delta-G solvation = -21582.339088 eV Core-core repulsion = 18597.194694 eV Total energy + Delta-G solvation = -2985.144394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63680 -39.25205 -36.89191 -35.53451 -33.58867 -31.67151 -31.31041 -30.47525 -27.99442 -25.79055 -23.97175 -23.53518 -23.01623 -21.70710 -20.68498 -20.20410 -18.44819 -17.99978 -16.92684 -16.41645 -16.32374 -15.87301 -15.52926 -15.37336 -14.88965 -14.70169 -14.59962 -14.31008 -14.05404 -13.53700 -13.38637 -13.13876 -12.93256 -12.83876 -12.77093 -12.54456 -12.26009 -12.15678 -12.00662 -11.90072 -11.80941 -11.52936 -11.44179 -11.25581 -11.05687 -10.79433 -10.62904 -10.55567 -10.35545 -9.10429 -8.07908 -6.21247 1.40474 1.41291 1.51387 2.43776 3.06330 3.18932 3.29030 3.76415 3.83861 4.08376 4.13726 4.22233 4.25063 4.34625 4.37025 4.44533 4.49015 4.59646 4.61873 4.67543 4.76251 4.77605 4.81585 4.86462 4.94503 4.99646 5.09685 5.13821 5.20254 5.24226 5.25274 5.30413 5.31150 5.35159 5.51964 5.57947 5.58298 5.63879 6.01067 6.04409 6.33117 6.39044 6.41726 6.90209 6.94573 7.46361 8.96720 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.004464 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.864087 B = 6270.580348 C = 6765.499173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.044 3.956 10 C -0.099 4.099 11 C 0.066 3.934 12 N -0.540 5.540 13 C 0.061 3.939 14 C -0.080 4.080 15 H 0.064 0.936 16 C -0.111 4.111 17 C -0.114 4.114 18 C -0.142 4.142 19 C 0.101 3.899 20 H 0.047 0.953 21 O -0.588 6.588 22 C -0.094 4.094 23 C 0.069 3.931 24 C -0.094 4.094 25 H 0.260 0.740 26 H -0.012 1.012 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.021 0.979 30 H 0.086 0.914 31 H 0.033 0.967 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.391 0.609 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.011 0.989 44 H 0.059 0.941 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.731 -17.005 -8.656 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.025 3.975 10 C -0.137 4.137 11 C -0.061 4.061 12 N -0.265 5.265 13 C -0.066 4.066 14 C -0.098 4.098 15 H 0.082 0.918 16 C -0.149 4.149 17 C -0.151 4.151 18 C -0.179 4.179 19 C 0.042 3.958 20 H 0.065 0.935 21 O -0.396 6.396 22 C -0.132 4.132 23 C -0.059 4.059 24 C -0.133 4.133 25 H 0.069 0.931 26 H 0.006 0.994 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.105 0.895 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.240 0.760 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.029 0.971 44 H 0.078 0.922 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.080 -16.807 -8.605 19.553 hybrid contribution -0.547 1.294 0.484 1.486 sum -5.626 -15.513 -8.121 18.392 Atomic orbital electron populations 1.70016 1.07143 1.27022 1.51584 1.25736 0.95687 1.02319 0.94826 0.85640 0.78789 0.79530 0.78200 1.20227 1.20769 1.19335 1.21600 0.92963 0.92357 1.50326 0.93222 1.18659 0.93169 0.92625 0.93004 1.21537 0.97976 0.94205 1.00017 1.22030 0.96106 0.98153 0.89845 1.61976 1.23467 1.03264 1.37761 1.22203 0.96975 0.90684 0.96766 1.21167 0.96596 0.98699 0.93374 0.91761 1.21574 0.98813 0.95730 0.98772 1.21465 0.97560 1.02634 0.93460 1.22193 0.99515 0.97058 0.99162 1.21889 0.92382 0.96151 0.85363 0.93456 1.86512 1.39907 1.94990 1.18234 1.21315 0.97622 1.01959 0.92280 1.22068 0.93167 0.91695 0.98962 1.21405 0.99074 0.94886 0.97893 0.93097 0.99409 0.92917 0.93286 0.96103 0.89547 0.94832 0.89860 0.91051 0.91081 0.89927 0.91975 0.91400 0.90346 0.75988 0.93200 0.92005 0.90690 0.97067 0.92224 0.95545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.38 11.37 21.45 0.24 -54.13 16 2 C 0.01 0.72 5.31 84.66 0.45 1.17 16 3 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.53 -30.71 8.56 25.60 0.22 -30.49 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 9 C 0.04 2.31 2.16 -11.46 -0.02 2.28 16 10 C -0.10 -4.32 5.32 30.65 0.16 -4.15 16 11 C 0.07 2.37 5.46 86.32 0.47 2.84 16 12 N -0.54 -18.92 4.08 -896.35 -3.66 -22.58 16 13 C 0.06 1.64 4.54 86.30 0.39 2.03 16 14 C -0.08 -1.90 1.70 -10.79 -0.02 -1.92 16 15 H 0.06 1.70 6.07 -2.39 -0.01 1.68 16 16 C -0.11 -1.93 5.20 30.60 0.16 -1.77 16 17 C -0.11 -1.71 5.92 30.59 0.18 -1.52 16 18 C -0.14 -2.29 5.55 30.60 0.17 -2.12 16 19 C 0.10 2.26 3.47 30.60 0.11 2.37 16 20 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 21 O -0.59 -14.05 13.32 -148.98 -1.98 -16.04 16 22 C -0.09 -2.51 4.64 30.59 0.14 -2.37 16 23 C 0.07 2.75 4.96 86.32 0.43 3.18 16 24 C -0.09 -4.70 5.12 30.64 0.16 -4.54 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 27 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 2.60 8.12 -2.39 -0.02 2.58 16 31 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.39 5.53 9.08 -74.06 -0.67 4.85 16 40 H 0.05 1.69 7.54 -2.39 -0.02 1.67 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 2.76 5.70 -2.39 -0.01 2.75 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.06 3.33 6.17 -2.39 -0.01 3.31 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -65.22 336.57 -0.11 -65.33 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.26 Total: 15.52 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.00 Total: -35.02 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -3.42 Total: -76.71 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.98 Total: -16.04 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.22 -0.11 -65.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397169426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.227 kcal (2) G-P(sol) polarization free energy of solvation -65.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds