Wall clock time and date at job start Mon Mar 30 2020 06:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48509 * 109.46904 * 269.99885 * 3 2 1 5 5 H 1.48501 * 109.47382 * 29.99376 * 3 2 1 6 6 H 1.48498 * 109.47054 * 149.99984 * 3 2 1 7 7 C 1.37869 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.53126 * 109.52245 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.27580 * 177.55470 * 10 9 7 12 12 N 1.46843 * 109.52681 * 300.81989 * 11 10 9 13 13 C 1.46899 * 110.99958 * 185.84099 * 12 11 10 14 14 C 1.53000 * 109.47246 * 75.90249 * 13 12 11 15 15 H 1.08998 * 109.46894 * 305.25526 * 14 13 12 16 16 C 1.52997 * 109.47237 * 65.25143 * 14 13 12 17 17 C 1.53007 * 109.46965 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47107 * 300.00371 * 17 16 14 19 19 C 1.53001 * 109.47183 * 60.00085 * 18 17 16 20 20 H 1.08998 * 109.47130 * 59.99790 * 19 18 17 21 21 O 1.42900 * 109.46992 * 179.97438 * 19 18 17 22 22 C 1.52990 * 109.46960 * 299.99755 * 19 18 17 23 23 C 1.46840 * 111.19859 * 61.74317 * 12 11 10 24 24 C 1.53040 * 109.52576 * 298.25806 * 23 12 11 25 25 H 0.96997 * 120.00380 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.57956 * 59.83834 * 9 7 2 27 27 H 1.08996 * 109.50473 * 57.61516 * 10 9 7 28 28 H 1.09000 * 109.53561 * 297.51436 * 10 9 7 29 29 H 1.09001 * 109.45816 * 180.80042 * 11 10 9 30 30 H 1.08997 * 109.45215 * 60.83587 * 11 10 9 31 31 H 1.09000 * 109.47115 * 195.89741 * 13 12 11 32 32 H 1.08998 * 109.47328 * 315.89702 * 13 12 11 33 33 H 1.08993 * 109.47305 * 300.00234 * 16 14 13 34 34 H 1.08998 * 109.46866 * 60.00366 * 16 14 13 35 35 H 1.08997 * 109.46649 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47024 * 60.00470 * 17 16 14 37 37 H 1.08998 * 109.47259 * 299.99955 * 18 17 16 38 38 H 1.09006 * 109.46695 * 180.02562 * 18 17 16 39 39 H 0.96698 * 114.00361 * 300.00546 * 21 19 18 40 40 H 1.09004 * 109.47507 * 300.00331 * 22 19 18 41 41 H 1.09001 * 109.47270 * 180.02562 * 22 19 18 42 42 H 1.09002 * 109.46411 * 58.27192 * 23 12 11 43 43 H 1.08995 * 109.46567 * 178.24127 * 23 12 11 44 44 H 1.08994 * 109.50434 * 299.24430 * 24 23 12 45 45 H 1.08999 * 109.54131 * 179.13961 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2451 -3.6638 0.0005 11 6 1.4752 -4.9850 0.0622 12 7 0.6545 -5.0185 1.2794 13 6 0.0083 -6.3276 1.4427 14 6 1.0382 -7.3470 1.9338 15 1 1.8893 -7.3604 1.2530 16 6 1.5124 -6.9581 3.3355 17 6 2.5418 -7.9779 3.8268 18 6 1.9022 -9.3670 3.8719 19 6 1.4280 -9.7559 2.4701 20 1 2.2792 -9.7697 1.7894 21 8 0.8311 -11.0536 2.5122 22 6 0.3987 -8.7362 1.9789 23 6 -0.3392 -3.9375 1.2797 24 6 0.3764 -2.5849 1.2544 25 1 -0.4850 0.8400 -0.0004 26 1 0.6219 -2.5576 -0.8876 27 1 2.8999 -3.5834 0.8682 28 1 2.8427 -3.6330 -0.9105 29 1 2.1806 -5.8159 0.0767 30 1 0.8310 -5.0709 -0.8128 31 1 -0.7983 -6.2463 2.1713 32 1 -0.3982 -6.6541 0.4856 33 1 1.9677 -5.9683 3.3034 34 1 0.6613 -6.9447 4.0163 35 1 2.8793 -7.7011 4.8256 36 1 3.3930 -7.9918 3.1461 37 1 1.0510 -9.3532 4.5526 38 1 2.6355 -10.0935 4.2223 39 1 1.4279 -11.7514 2.8153 40 1 -0.4526 -8.7223 2.6596 41 1 0.0604 -9.0134 0.9805 42 1 -0.9751 -4.0284 0.3990 43 1 -0.9518 -4.0075 2.1784 44 1 1.0018 -2.4875 2.1417 45 1 -0.3612 -1.7825 1.2392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397169428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:17 Heat of formation + Delta-G solvation = -83.632282 kcal Electronic energy + Delta-G solvation = -21321.120955 eV Core-core repulsion = 18336.623802 eV Total energy + Delta-G solvation = -2984.497153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.44099 -37.98116 -35.85783 -33.86165 -31.94875 -30.56233 -29.76117 -29.28697 -26.30465 -24.28276 -22.40849 -22.30730 -21.66108 -20.64110 -19.68400 -18.52583 -17.22813 -16.35730 -15.56010 -15.23858 -14.78208 -14.58701 -14.38567 -13.98105 -13.80411 -13.38384 -13.02261 -12.65091 -12.58394 -12.50829 -12.14103 -11.90095 -11.67271 -11.38738 -11.26245 -11.00292 -10.91936 -10.77737 -10.52201 -10.46020 -10.41171 -10.16634 -10.14595 -9.89498 -9.84180 -9.40181 -8.89762 -8.67346 -8.26340 -7.67946 -5.94515 -3.99743 3.32774 3.39557 3.43126 3.92883 4.47097 4.53480 4.58492 4.65932 4.95836 5.04484 5.15365 5.34375 5.35902 5.40004 5.45529 5.48692 5.67262 5.70922 5.79092 5.89193 5.91567 5.95215 6.01163 6.09184 6.13888 6.17410 6.22163 6.31901 6.37446 6.52438 6.56919 6.64128 6.67945 6.89879 7.12204 7.21238 7.44965 7.48369 7.66858 7.75616 7.87664 8.08890 8.19769 8.51732 9.04060 9.64522 11.11632 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043083 B = 0.003679 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.748877 B = 7609.179360 C = 7778.179634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.532 5.532 13 C 0.059 3.941 14 C -0.076 4.076 15 H 0.071 0.929 16 C -0.108 4.108 17 C -0.118 4.118 18 C -0.150 4.150 19 C 0.106 3.894 20 H 0.053 0.947 21 O -0.571 6.571 22 C -0.107 4.107 23 C 0.058 3.942 24 C -0.103 4.103 25 H 0.259 0.741 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.374 0.626 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.021 0.979 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 -17.959 6.045 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.068 4.068 12 N -0.257 5.257 13 C -0.070 4.070 14 C -0.095 4.095 15 H 0.089 0.911 16 C -0.145 4.145 17 C -0.156 4.156 18 C -0.187 4.187 19 C 0.047 3.953 20 H 0.071 0.929 21 O -0.377 6.377 22 C -0.145 4.145 23 C -0.069 4.069 24 C -0.142 4.142 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.221 0.779 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.712 -17.399 6.226 18.558 hybrid contribution 0.376 0.456 -0.492 0.769 sum 2.088 -16.943 5.734 18.009 Atomic orbital electron populations 1.69879 1.05856 1.26252 1.51179 1.24968 0.94833 0.98982 0.95263 0.86642 0.79931 0.83710 0.77981 1.20843 1.21316 1.19961 1.21216 0.92863 0.90714 1.49981 0.92801 1.18679 0.92709 0.91719 0.93956 1.21671 0.98686 0.93856 1.00145 1.22147 0.95909 0.99075 0.89662 1.61929 1.23738 1.01895 1.38112 1.22084 0.95735 0.89947 0.99196 1.21060 0.98369 0.92249 0.97826 0.91065 1.21501 0.98337 0.99509 0.95150 1.21514 0.98648 0.94083 1.01334 1.22267 1.00802 0.97901 0.97779 1.21821 0.95295 0.82731 0.95446 0.92901 1.86517 1.43277 1.17720 1.90150 1.21510 0.98025 0.93262 1.01682 1.22271 0.93027 0.93099 0.98515 1.21650 1.00149 0.93023 0.99337 0.93141 0.96253 0.92555 0.93386 0.92500 0.96002 0.91445 0.95316 0.89875 0.92485 0.91897 0.92039 0.91315 0.92302 0.77906 0.91351 0.91621 0.96119 0.92749 0.93857 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 11.37 55.43 0.63 -24.91 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.06 8.56 -34.45 -0.29 -14.36 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.20 2.16 -91.64 -0.20 1.00 16 10 C -0.11 -2.22 5.32 -26.65 -0.14 -2.37 16 11 C 0.06 1.08 5.29 -3.83 -0.02 1.05 16 12 N -0.53 -9.26 4.05 -234.68 -0.95 -10.21 16 13 C 0.06 0.84 4.39 -3.82 -0.02 0.83 16 14 C -0.08 -0.93 2.25 -90.62 -0.20 -1.13 16 15 H 0.07 0.91 6.70 -51.93 -0.35 0.56 16 16 C -0.11 -1.29 5.09 -26.73 -0.14 -1.42 16 17 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 18 C -0.15 -1.36 5.54 -26.73 -0.15 -1.50 16 19 C 0.11 1.05 3.47 -26.74 -0.09 0.96 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 O -0.57 -5.75 13.32 -35.23 -0.47 -6.22 16 22 C -0.11 -1.20 4.85 -26.74 -0.13 -1.33 16 23 C 0.06 1.14 5.43 -3.84 -0.02 1.12 16 24 C -0.10 -2.44 5.12 -26.65 -0.14 -2.58 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.90 6.65 -51.93 -0.35 0.56 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 32 H 0.03 0.41 8.00 -51.93 -0.42 0.00 16 33 H 0.08 1.17 7.76 -51.93 -0.40 0.77 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.37 2.13 9.08 45.56 0.41 2.54 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.99 7.93 -51.93 -0.41 0.57 16 44 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -28.96 338.43 -10.20 -39.15 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.69 Total: 0.20 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -1.79 Total: -19.49 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.32 Total: -35.13 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.47 Total: -6.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.96 -10.20 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397169428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.478 kcal (2) G-P(sol) polarization free energy of solvation -28.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds