Wall clock time and date at job start Mon Mar 30 2020 06:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48509 * 109.46904 * 269.99885 * 3 2 1 5 5 H 1.48501 * 109.47382 * 29.99376 * 3 2 1 6 6 H 1.48498 * 109.47054 * 149.99984 * 3 2 1 7 7 C 1.37869 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00014 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00090 * 0.02562 * 7 2 1 10 10 C 1.53126 * 109.52245 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.27580 * 177.55470 * 10 9 7 12 12 N 1.46843 * 109.52681 * 300.81989 * 11 10 9 13 13 C 1.46899 * 110.99958 * 185.84099 * 12 11 10 14 14 C 1.53000 * 109.47246 * 75.90249 * 13 12 11 15 15 H 1.08998 * 109.46894 * 305.25526 * 14 13 12 16 16 C 1.52997 * 109.47237 * 65.25143 * 14 13 12 17 17 C 1.53007 * 109.46965 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47107 * 300.00371 * 17 16 14 19 19 C 1.53001 * 109.47183 * 60.00085 * 18 17 16 20 20 H 1.08998 * 109.47130 * 59.99790 * 19 18 17 21 21 O 1.42900 * 109.46992 * 179.97438 * 19 18 17 22 22 C 1.52990 * 109.46960 * 299.99755 * 19 18 17 23 23 C 1.46840 * 111.19859 * 61.74317 * 12 11 10 24 24 C 1.53040 * 109.52576 * 298.25806 * 23 12 11 25 25 H 0.96997 * 120.00380 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.57956 * 59.83834 * 9 7 2 27 27 H 1.08996 * 109.50473 * 57.61516 * 10 9 7 28 28 H 1.09000 * 109.53561 * 297.51436 * 10 9 7 29 29 H 1.09001 * 109.45816 * 180.80042 * 11 10 9 30 30 H 1.08997 * 109.45215 * 60.83587 * 11 10 9 31 31 H 1.09000 * 109.47115 * 195.89741 * 13 12 11 32 32 H 1.08998 * 109.47328 * 315.89702 * 13 12 11 33 33 H 1.08993 * 109.47305 * 300.00234 * 16 14 13 34 34 H 1.08998 * 109.46866 * 60.00366 * 16 14 13 35 35 H 1.08997 * 109.46649 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47024 * 60.00470 * 17 16 14 37 37 H 1.08998 * 109.47259 * 299.99955 * 18 17 16 38 38 H 1.09006 * 109.46695 * 180.02562 * 18 17 16 39 39 H 0.96698 * 114.00361 * 300.00546 * 21 19 18 40 40 H 1.09004 * 109.47507 * 300.00331 * 22 19 18 41 41 H 1.09001 * 109.47270 * 180.02562 * 22 19 18 42 42 H 1.09002 * 109.46411 * 58.27192 * 23 12 11 43 43 H 1.08995 * 109.46567 * 178.24127 * 23 12 11 44 44 H 1.08994 * 109.50434 * 299.24430 * 24 23 12 45 45 H 1.08999 * 109.54131 * 179.13961 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2451 -3.6638 0.0005 11 6 1.4752 -4.9850 0.0622 12 7 0.6545 -5.0185 1.2794 13 6 0.0083 -6.3276 1.4427 14 6 1.0382 -7.3470 1.9338 15 1 1.8893 -7.3604 1.2530 16 6 1.5124 -6.9581 3.3355 17 6 2.5418 -7.9779 3.8268 18 6 1.9022 -9.3670 3.8719 19 6 1.4280 -9.7559 2.4701 20 1 2.2792 -9.7697 1.7894 21 8 0.8311 -11.0536 2.5122 22 6 0.3987 -8.7362 1.9789 23 6 -0.3392 -3.9375 1.2797 24 6 0.3764 -2.5849 1.2544 25 1 -0.4850 0.8400 -0.0004 26 1 0.6219 -2.5576 -0.8876 27 1 2.8999 -3.5834 0.8682 28 1 2.8427 -3.6330 -0.9105 29 1 2.1806 -5.8159 0.0767 30 1 0.8310 -5.0709 -0.8128 31 1 -0.7983 -6.2463 2.1713 32 1 -0.3982 -6.6541 0.4856 33 1 1.9677 -5.9683 3.3034 34 1 0.6613 -6.9447 4.0163 35 1 2.8793 -7.7011 4.8256 36 1 3.3930 -7.9918 3.1461 37 1 1.0510 -9.3532 4.5526 38 1 2.6355 -10.0935 4.2223 39 1 1.4279 -11.7514 2.8153 40 1 -0.4526 -8.7223 2.6596 41 1 0.0604 -9.0134 0.9805 42 1 -0.9751 -4.0284 0.3990 43 1 -0.9518 -4.0075 2.1784 44 1 1.0018 -2.4875 2.1417 45 1 -0.3612 -1.7825 1.2392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397169428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:16 Heat of formation + Delta-G solvation = -101.659115 kcal Electronic energy + Delta-G solvation = -21321.902657 eV Core-core repulsion = 18336.623802 eV Total energy + Delta-G solvation = -2985.278855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48881 -39.31482 -36.86321 -35.48776 -33.52535 -31.92401 -31.32252 -30.28235 -27.96291 -25.77628 -23.89853 -23.36318 -23.13387 -21.74462 -20.61801 -20.30862 -18.43559 -17.98921 -16.87759 -16.38973 -16.33053 -15.87849 -15.46037 -15.21161 -14.89879 -14.73354 -14.59882 -14.27153 -14.07289 -13.68459 -13.34343 -13.05041 -13.01213 -12.83167 -12.75061 -12.53069 -12.26298 -12.18455 -12.03001 -11.85707 -11.80321 -11.41171 -11.37174 -11.33383 -11.06768 -10.72270 -10.64532 -10.61329 -10.35768 -9.12355 -8.07071 -6.20499 1.41193 1.42073 1.52433 2.44413 2.94882 3.19721 3.42446 3.73619 3.83365 4.10032 4.17410 4.21524 4.30534 4.33699 4.35780 4.49087 4.54215 4.60148 4.61779 4.68987 4.71146 4.77662 4.82484 4.89911 4.93222 4.99298 5.09845 5.13532 5.19928 5.24660 5.27049 5.29481 5.37632 5.40323 5.55695 5.59525 5.61810 5.65310 6.02156 6.05389 6.33295 6.37971 6.42199 6.91361 6.93700 7.47267 8.97451 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.043083 B = 0.003679 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.748877 B = 7609.179360 C = 7778.179634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.044 3.956 10 C -0.098 4.098 11 C 0.067 3.933 12 N -0.533 5.533 13 C 0.059 3.941 14 C -0.066 4.066 15 H 0.070 0.930 16 C -0.105 4.105 17 C -0.115 4.115 18 C -0.143 4.143 19 C 0.108 3.892 20 H 0.060 0.940 21 O -0.587 6.587 22 C -0.104 4.104 23 C 0.069 3.931 24 C -0.093 4.093 25 H 0.260 0.740 26 H -0.015 1.015 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.016 0.984 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.393 0.607 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.011 0.989 43 H 0.071 0.929 44 H 0.031 0.969 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -19.600 6.746 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.025 3.975 10 C -0.136 4.136 11 C -0.061 4.061 12 N -0.257 5.257 13 C -0.068 4.068 14 C -0.085 4.085 15 H 0.088 0.912 16 C -0.143 4.143 17 C -0.152 4.152 18 C -0.181 4.181 19 C 0.049 3.951 20 H 0.078 0.922 21 O -0.396 6.396 22 C -0.142 4.142 23 C -0.059 4.059 24 C -0.132 4.132 25 H 0.069 0.931 26 H 0.004 0.996 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.034 0.966 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.243 0.757 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.029 0.971 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.743 -19.070 6.932 20.475 hybrid contribution 0.041 0.945 -0.717 1.187 sum 2.784 -18.124 6.216 19.362 Atomic orbital electron populations 1.70021 1.07156 1.27008 1.51622 1.25748 0.95685 1.02365 0.94909 0.85632 0.78802 0.79533 0.78138 1.20265 1.20905 1.19282 1.21593 0.92991 0.92278 1.50200 0.93099 1.18660 0.93179 0.92660 0.92974 1.21529 0.97937 0.94029 1.00102 1.22064 0.96146 0.98168 0.89714 1.61891 1.23335 1.02810 1.37711 1.22174 0.96493 0.88570 0.99610 1.20950 0.97573 0.92203 0.97799 0.91183 1.21446 0.98751 0.99035 0.95055 1.21476 0.98073 0.94016 1.01661 1.22205 1.01023 0.97687 0.97151 1.21753 0.94792 0.82536 0.96021 0.92249 1.86469 1.44445 1.18243 1.90401 1.21445 0.98288 0.92996 1.01504 1.22040 0.93002 0.91908 0.98925 1.21401 0.99109 0.94597 0.98078 0.93134 0.99649 0.92920 0.93074 0.89548 0.96555 0.90889 0.95091 0.92117 0.92652 0.91254 0.91734 0.91880 0.90238 0.75690 0.91786 0.91986 0.97070 0.91026 0.94981 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.92 11.37 21.44 0.24 -53.68 16 2 C 0.01 0.63 5.31 84.65 0.45 1.08 16 3 Si 0.95 44.29 29.54 68.60 2.03 46.32 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.53 -30.03 8.56 25.60 0.22 -29.81 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.04 2.25 2.16 -11.46 -0.02 2.23 16 10 C -0.10 -4.13 5.32 30.65 0.16 -3.97 16 11 C 0.07 2.33 5.29 86.33 0.46 2.79 16 12 N -0.53 -18.07 4.05 -896.39 -3.63 -21.70 16 13 C 0.06 1.60 4.39 86.30 0.38 1.98 16 14 C -0.07 -1.49 2.25 -10.79 -0.02 -1.51 16 15 H 0.07 1.61 6.70 -2.39 -0.02 1.59 16 16 C -0.11 -2.34 5.09 30.60 0.16 -2.18 16 17 C -0.11 -2.00 5.92 30.60 0.18 -1.82 16 18 C -0.14 -2.17 5.54 30.59 0.17 -2.00 16 19 C 0.11 1.85 3.47 30.59 0.11 1.95 16 20 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 21 O -0.59 -10.23 13.32 -148.98 -1.98 -12.22 16 22 C -0.10 -2.12 4.85 30.59 0.15 -1.97 16 23 C 0.07 2.72 5.43 86.33 0.47 3.19 16 24 C -0.09 -4.54 5.12 30.65 0.16 -4.39 16 25 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.09 2.54 6.65 -2.39 -0.02 2.52 16 30 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.91 7.79 -2.39 -0.02 1.89 16 32 H 0.03 0.84 8.00 -2.39 -0.02 0.82 16 33 H 0.06 1.63 7.76 -2.39 -0.02 1.61 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.39 3.30 9.08 -74.06 -0.67 2.62 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 44 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.06 3.26 6.17 -2.39 -0.01 3.24 16 Total: -1.00 -62.81 338.43 -0.08 -62.89 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.26 Total: 12.81 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 3.00 Total: -34.43 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -3.38 Total: -75.38 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.98 Total: -12.22 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -62.81 -0.08 -62.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397169428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.768 kcal (2) G-P(sol) polarization free energy of solvation -62.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds