Wall clock time and date at job start Mon Mar 30 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48507 * 109.47083 * 239.99906 * 3 2 1 5 5 H 1.48501 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47201 * 119.99987 * 3 2 1 7 7 C 1.37875 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00598 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00096 * 0.02562 * 7 2 1 10 10 C 1.53120 * 109.57328 * 60.15585 * 9 7 2 11 11 C 1.53034 * 109.27560 * 177.59709 * 10 9 7 12 12 N 1.46848 * 109.52045 * 300.81800 * 11 10 9 13 13 C 1.46905 * 110.99810 * 185.83870 * 12 11 10 14 14 C 1.53005 * 109.47007 * 169.88459 * 13 12 11 15 15 H 1.08999 * 109.47166 * 56.85904 * 14 13 12 16 16 C 1.53002 * 109.47041 * 296.85863 * 14 13 12 17 17 C 1.53000 * 109.46716 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47307 * 59.99903 * 17 16 14 19 19 C 1.53000 * 109.47142 * 300.00080 * 18 17 16 20 20 H 1.08998 * 109.46842 * 179.97438 * 19 18 17 21 21 O 1.42905 * 109.46958 * 300.00042 * 19 18 17 22 22 C 1.52997 * 109.46882 * 176.85835 * 14 13 12 23 23 C 1.46847 * 111.19762 * 61.74742 * 12 11 10 24 24 C 1.53036 * 109.52293 * 298.25703 * 23 12 11 25 25 H 0.97002 * 120.00232 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.51448 * 300.00026 * 9 7 2 27 27 H 1.08999 * 109.50180 * 297.53238 * 10 9 7 28 28 H 1.08992 * 109.50444 * 57.65195 * 10 9 7 29 29 H 1.09004 * 109.46185 * 180.80418 * 11 10 9 30 30 H 1.08994 * 109.46558 * 60.83865 * 11 10 9 31 31 H 1.08995 * 109.47227 * 289.88850 * 13 12 11 32 32 H 1.09002 * 109.46751 * 49.88747 * 13 12 11 33 33 H 1.08993 * 109.47179 * 299.99574 * 16 14 13 34 34 H 1.08998 * 109.47011 * 60.00047 * 16 14 13 35 35 H 1.08997 * 109.47237 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.47345 * 299.99952 * 17 16 14 37 37 H 1.08999 * 109.46877 * 59.99763 * 18 17 16 38 38 H 1.08999 * 109.47071 * 179.97438 * 18 17 16 39 39 H 0.96706 * 113.99410 * 299.99724 * 21 19 18 40 40 H 1.08999 * 109.47366 * 299.99907 * 22 14 13 41 41 H 1.08993 * 109.47539 * 60.00303 * 22 14 13 42 42 H 1.08996 * 109.46540 * 178.23758 * 23 12 11 43 43 H 1.08999 * 109.46003 * 58.27120 * 23 12 11 44 44 H 1.09000 * 109.49782 * 299.23617 * 24 23 12 45 45 H 1.09000 * 109.50616 * 179.12429 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.3732 -2.5848 -1.2512 11 6 -0.3425 -3.9372 -1.2748 12 7 0.6512 -5.0184 -1.2771 13 6 0.0046 -6.3275 -1.4390 14 6 1.0711 -7.3957 -1.6891 15 1 1.7878 -7.3928 -0.8680 16 6 1.7976 -7.0935 -3.0013 17 6 2.8644 -8.1614 -3.2511 18 6 2.1988 -9.5360 -3.3414 19 6 1.4722 -9.8381 -2.0293 20 1 0.9977 -10.8172 -2.0938 21 8 2.4119 -9.8336 -0.9526 22 6 0.4048 -8.7700 -1.7797 23 6 1.4749 -4.9851 -0.0618 24 6 2.2449 -3.6639 -0.0019 25 1 -0.4850 0.8400 -0.0004 26 1 0.6237 -2.5575 0.8901 27 1 -0.3648 -1.7828 -1.2336 28 1 0.9964 -2.4873 -2.1400 29 1 -0.9574 -4.0071 -2.1721 30 1 -0.9762 -4.0283 -0.3926 31 1 -0.5504 -6.5730 -0.5336 32 1 -0.6801 -6.2921 -2.2864 33 1 1.0808 -7.0965 -3.8225 34 1 2.2721 -6.1144 -2.9367 35 1 3.3824 -7.9459 -4.1856 36 1 3.5811 -8.1580 -2.4299 37 1 1.4821 -9.5394 -4.1627 38 1 2.9588 -10.2967 -3.5198 39 1 3.1185 -10.4874 -1.0446 40 1 -0.1127 -8.9852 -0.8449 41 1 -0.3119 -8.7730 -2.6009 42 1 2.1801 -5.8160 -0.0782 43 1 0.8327 -5.0712 0.8146 44 1 2.8976 -3.5834 -0.8712 45 1 2.8442 -3.6328 0.9080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397169431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:19 Heat of formation + Delta-G solvation = -98.584027 kcal Electronic energy + Delta-G solvation = -21545.255414 eV Core-core repulsion = 18560.109905 eV Total energy + Delta-G solvation = -2985.145509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56461 -39.34567 -36.57076 -35.30494 -33.47873 -31.91897 -31.33386 -30.48279 -27.98211 -25.76404 -23.95294 -23.44188 -23.11746 -21.61428 -20.52766 -20.27885 -18.44260 -17.62557 -16.89649 -16.58570 -16.38978 -15.85082 -15.40213 -15.27804 -14.93228 -14.80016 -14.30645 -14.29520 -14.04797 -13.50949 -13.21613 -13.04689 -12.98762 -12.83734 -12.80023 -12.53206 -12.35239 -12.19714 -12.02464 -11.86648 -11.78119 -11.57304 -11.35183 -11.27730 -10.86342 -10.68341 -10.64718 -10.46952 -10.35173 -9.12350 -8.07126 -6.20903 1.41517 1.43197 1.50770 2.44392 3.05606 3.19489 3.49468 3.78452 3.89114 4.02816 4.20043 4.23050 4.29692 4.34130 4.47103 4.48844 4.54716 4.62809 4.66948 4.72135 4.74443 4.79511 4.88693 4.91349 4.93950 4.98197 5.09462 5.13437 5.16755 5.24418 5.30751 5.36158 5.38807 5.44852 5.56053 5.61026 5.65523 5.69243 6.00964 6.04548 6.33725 6.37608 6.41670 6.90107 7.01820 7.46693 8.97306 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039324 B = 0.003918 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.854785 B = 7144.184304 C = 7317.066510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.044 3.956 10 C -0.093 4.093 11 C 0.068 3.932 12 N -0.533 5.533 13 C 0.058 3.942 14 C -0.069 4.069 15 H 0.059 0.941 16 C -0.101 4.101 17 C -0.114 4.114 18 C -0.145 4.145 19 C 0.107 3.893 20 H 0.070 0.930 21 O -0.583 6.583 22 C -0.108 4.108 23 C 0.068 3.932 24 C -0.098 4.098 25 H 0.260 0.740 26 H -0.015 1.015 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.010 0.990 31 H 0.023 0.977 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.389 0.611 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.013 0.987 44 H 0.051 0.949 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -21.129 -6.905 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.131 4.131 11 C -0.060 4.060 12 N -0.258 5.258 13 C -0.070 4.070 14 C -0.088 4.088 15 H 0.078 0.922 16 C -0.139 4.139 17 C -0.152 4.152 18 C -0.182 4.182 19 C 0.048 3.952 20 H 0.088 0.912 21 O -0.391 6.391 22 C -0.146 4.146 23 C -0.060 4.060 24 C -0.135 4.135 25 H 0.069 0.931 26 H 0.003 0.997 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.238 0.762 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.031 0.969 44 H 0.070 0.930 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.575 -20.452 -7.092 21.704 hybrid contribution 0.042 0.824 0.772 1.129 sum 1.617 -19.629 -6.320 20.684 Atomic orbital electron populations 1.70009 1.07169 1.27119 1.51455 1.25743 0.95693 1.02348 0.94785 0.85678 0.78442 0.79126 0.78794 1.19653 1.20841 1.19749 1.21558 0.92965 0.92276 1.50524 0.93165 1.18655 0.93145 0.92592 0.93040 1.21395 0.99101 0.94649 0.97980 1.22041 0.93021 0.91911 0.98980 1.61938 1.23183 1.03040 1.37609 1.22251 0.96292 0.88457 0.99973 1.20968 0.96414 0.92965 0.98475 0.92228 1.21389 0.97782 0.98467 0.96269 1.21429 0.97815 0.94751 1.01162 1.22212 1.00667 0.97323 0.98031 1.21809 0.89446 0.97910 0.86031 0.91250 1.86537 1.42408 1.63432 1.46753 1.21612 0.97145 0.93333 1.02510 1.22022 0.96099 0.98038 0.89802 1.21525 0.97974 0.94088 0.99956 0.93072 0.99669 0.92056 0.95042 0.90795 0.97130 0.95915 0.90284 0.92157 0.93115 0.91949 0.92756 0.90351 0.90403 0.76221 0.92205 0.89305 0.90053 0.96870 0.93043 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.43 11.37 21.45 0.24 -54.19 16 2 C 0.01 0.72 5.31 84.66 0.45 1.17 16 3 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -30.80 8.57 25.60 0.22 -30.58 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.04 2.34 2.16 -11.46 -0.02 2.32 16 10 C -0.09 -4.63 5.12 30.65 0.16 -4.47 16 11 C 0.07 2.77 5.46 86.32 0.47 3.25 16 12 N -0.53 -19.21 4.03 -896.36 -3.61 -22.82 16 13 C 0.06 1.66 4.37 86.30 0.38 2.04 16 14 C -0.07 -1.72 1.94 -10.79 -0.02 -1.74 16 15 H 0.06 1.73 5.84 -2.39 -0.01 1.72 16 16 C -0.10 -2.43 5.08 30.59 0.16 -2.28 16 17 C -0.11 -2.22 5.78 30.59 0.18 -2.04 16 18 C -0.14 -2.05 5.64 30.59 0.17 -1.87 16 19 C 0.11 1.68 3.77 30.61 0.12 1.80 16 20 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 21 O -0.58 -10.76 11.97 -148.98 -1.78 -12.54 16 22 C -0.11 -2.07 4.95 30.61 0.15 -1.92 16 23 C 0.07 2.59 5.29 86.33 0.46 3.04 16 24 C -0.10 -4.34 5.32 30.64 0.16 -4.17 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.89 16 27 H 0.06 3.41 6.17 -2.39 -0.01 3.39 16 28 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 2.69 8.01 -2.39 -0.02 2.67 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 31 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 32 H 0.08 2.07 7.99 -2.39 -0.02 2.05 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.51 7.70 -2.39 -0.02 1.49 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.18 7.68 -2.39 -0.02 1.16 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.39 3.89 9.08 -74.05 -0.67 3.22 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 2.78 6.16 -2.39 -0.01 2.77 16 43 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -64.52 335.61 0.16 -64.36 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.26 Total: 13.85 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 3.02 Total: -35.47 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -3.37 Total: -77.01 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.78 Total: -12.54 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.52 0.16 -64.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397169431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.227 kcal (2) G-P(sol) polarization free energy of solvation -64.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds