Wall clock time and date at job start Mon Mar 30 2020 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99982 * 2 1 4 4 H 1.48503 * 109.47078 * 269.99899 * 3 2 1 5 5 H 1.48499 * 109.47310 * 30.00108 * 3 2 1 6 6 H 1.48501 * 109.46996 * 150.00164 * 3 2 1 7 7 C 1.37876 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.53115 * 109.52430 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.27846 * 182.44504 * 10 9 7 12 12 N 1.46848 * 109.52540 * 59.17607 * 11 10 9 13 13 C 1.46906 * 110.99708 * 174.16170 * 12 11 10 14 14 H 1.08995 * 108.85220 * 303.83674 * 13 12 11 15 15 C 1.54067 * 108.87492 * 62.40052 * 13 12 11 16 16 C 1.54005 * 112.85176 * 162.58932 * 15 13 12 17 17 C 1.50475 * 112.54849 * 41.55850 * 16 15 13 18 18 C 1.54247 * 108.52449 * 265.92935 * 17 16 15 19 19 C 1.45543 * 112.39943 * 79.97800 * 18 17 16 20 20 C 1.50480 * 108.87296 * 185.27568 * 13 12 11 21 21 H 1.09000 * 109.62959 * 264.97101 * 20 13 12 22 22 O 1.42900 * 109.62715 * 25.36454 * 20 13 12 23 23 C 1.46846 * 111.20160 * 298.25940 * 12 11 10 24 24 C 1.53042 * 109.52084 * 61.73866 * 23 12 11 25 25 H 0.97003 * 120.00295 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.57743 * 300.16319 * 9 7 2 27 27 H 1.09004 * 109.50539 * 302.38075 * 10 9 7 28 28 H 1.09002 * 109.50467 * 62.50303 * 10 9 7 29 29 H 1.08994 * 109.46662 * 179.19931 * 11 10 9 30 30 H 1.09008 * 109.46125 * 299.16244 * 11 10 9 31 31 H 1.09003 * 108.80823 * 283.34814 * 15 13 12 32 32 H 1.08996 * 108.81599 * 41.62679 * 15 13 12 33 33 H 1.08994 * 108.79336 * 280.80505 * 16 15 13 34 34 H 1.08995 * 108.83080 * 162.33457 * 16 15 13 35 35 H 1.08996 * 109.62933 * 146.21901 * 17 16 15 36 36 H 1.09001 * 109.63195 * 25.63758 * 17 16 15 37 37 H 1.09004 * 108.89527 * 319.22424 * 18 17 16 38 38 H 1.09001 * 108.81865 * 200.67798 * 18 17 16 39 39 H 1.09006 * 108.89069 * 177.30260 * 19 18 17 40 40 H 1.08998 * 108.81976 * 58.76841 * 19 18 17 41 41 H 0.96701 * 113.99783 * 179.97438 * 22 20 13 42 42 H 1.08998 * 109.45951 * 301.72898 * 23 12 11 43 43 H 1.08987 * 109.46449 * 181.75606 * 23 12 11 44 44 H 1.08997 * 109.50447 * 180.88153 * 24 23 12 45 45 H 1.08998 * 109.53365 * 60.78395 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2449 -3.6639 -0.0005 11 6 1.4751 -4.9851 -0.0622 12 7 0.6543 -5.0186 -1.2794 13 6 0.0081 -6.3277 -1.4427 14 1 0.7756 -7.1016 -1.4443 15 6 -0.9395 -6.5678 -0.2518 16 6 -1.9690 -7.6809 -0.5217 17 6 -1.3674 -8.8636 -1.2313 18 6 -1.5848 -8.6875 -2.7482 19 6 -0.6173 -7.7788 -3.3453 20 6 -0.7123 -6.3536 -2.7636 21 1 -1.7581 -6.0843 -2.6156 22 8 -0.1003 -5.4264 -3.6623 23 6 -0.3395 -3.9375 -1.2796 24 6 0.3762 -2.5849 -1.2544 25 1 -0.4851 0.8400 -0.0004 26 1 0.6218 -2.5577 0.8876 27 1 2.8998 -3.5835 -0.8682 28 1 2.8420 -3.6328 0.9109 29 1 2.1803 -5.8161 -0.0767 30 1 0.8307 -5.0711 0.8129 31 1 -0.3458 -6.8442 0.6195 32 1 -1.4708 -5.6416 -0.0330 33 1 -2.7736 -7.2741 -1.1341 34 1 -2.3843 -8.0142 0.4294 35 1 -1.8548 -9.7789 -0.8955 36 1 -0.2997 -8.9145 -1.0179 37 1 -2.5880 -8.2965 -2.9180 38 1 -1.4994 -9.6610 -3.2310 39 1 -0.7921 -7.7337 -4.4203 40 1 0.3857 -8.1666 -3.1673 41 1 -0.5155 -5.3920 -4.5350 42 1 -0.9752 -4.0284 -0.3990 43 1 -0.9520 -4.0075 -2.1784 44 1 -0.3617 -1.7829 -1.2388 45 1 1.0015 -2.4869 -2.1417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397178473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:31 Heat of formation + Delta-G solvation = -60.514833 kcal Electronic energy + Delta-G solvation = -22228.907421 eV Core-core repulsion = 19245.412715 eV Total energy + Delta-G solvation = -2983.494705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.99009 -37.32257 -35.67210 -33.96583 -31.97815 -31.17186 -29.63759 -28.93468 -25.68028 -24.60378 -23.44852 -22.12724 -21.52935 -20.48900 -19.24826 -17.91646 -17.27198 -16.28446 -15.75563 -14.98403 -14.57055 -14.45861 -14.33597 -14.04204 -13.75090 -13.20974 -13.13572 -12.86875 -12.52115 -12.29472 -12.13161 -11.75512 -11.49817 -11.25795 -11.07834 -10.91507 -10.82262 -10.67339 -10.57514 -10.51397 -10.37415 -10.13687 -9.97812 -9.76513 -9.50354 -9.25207 -8.83009 -8.55423 -8.18946 -7.42358 -5.88314 -3.93038 3.37057 3.43181 3.46834 4.26317 4.47637 4.52671 4.54860 4.87308 4.91173 5.10257 5.16886 5.18362 5.26737 5.37845 5.41950 5.58137 5.68954 5.83723 5.89099 5.93993 5.98074 6.02765 6.05949 6.09466 6.14681 6.17733 6.22952 6.32207 6.36308 6.50326 6.56217 6.78318 6.84145 7.00300 7.21805 7.35530 7.60823 7.77732 7.83648 7.98397 8.06702 8.20158 8.29920 8.59707 9.10670 9.70613 11.17797 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037262 B = 0.004662 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.248759 B = 6004.856212 C = 6161.034353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.056 3.944 12 N -0.508 5.508 13 C 0.092 3.908 14 H 0.074 0.926 15 C -0.155 4.155 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.148 4.148 20 C 0.119 3.881 21 H 0.049 0.951 22 O -0.531 6.531 23 C 0.061 3.939 24 C -0.101 4.101 25 H 0.258 0.742 26 H 0.018 0.982 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.022 0.978 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.361 0.639 42 H 0.016 0.984 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 -17.066 -4.775 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.071 4.071 12 N -0.231 5.231 13 C -0.017 4.017 14 H 0.092 0.908 15 C -0.194 4.194 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.187 4.187 20 C 0.060 3.940 21 H 0.067 0.933 22 O -0.333 6.333 23 C -0.066 4.066 24 C -0.139 4.139 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.206 0.794 42 H 0.034 0.966 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.400 -16.738 -4.644 17.919 hybrid contribution -0.510 0.597 0.282 0.835 sum -4.910 -16.141 -4.362 17.426 Atomic orbital electron populations 1.69891 1.05844 1.26109 1.51390 1.24957 0.94812 0.98901 0.95340 0.86654 0.79876 0.83779 0.78025 1.20758 1.21405 1.20043 1.21235 0.92849 0.90787 1.49735 0.92862 1.18681 0.92717 0.91628 0.94021 1.21661 0.98715 0.93913 1.00022 1.22148 0.95799 0.99000 0.90200 1.62240 1.22995 1.00975 1.36878 1.21548 0.94891 0.93520 0.91746 0.90789 1.22668 0.98227 0.99240 0.99293 1.21296 0.98371 0.95419 1.00328 1.21379 1.01623 0.97858 0.94821 1.20441 0.99597 0.99332 0.95951 1.21201 1.00726 0.96550 1.00175 1.21419 0.95431 0.87258 0.89925 0.93278 1.86900 1.59423 1.61639 1.25357 1.22272 0.93265 0.92847 0.98248 1.21599 1.00014 0.93131 0.99138 0.93241 0.96430 0.92549 0.93531 0.92921 0.95973 0.91922 0.91069 0.92243 0.92452 0.92071 0.91489 0.92230 0.92320 0.91959 0.91451 0.79380 0.96612 0.91961 0.89397 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 11.37 55.43 0.63 -25.47 16 2 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.45 8.56 -34.44 -0.29 -14.74 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.25 2.16 -91.65 -0.20 1.05 16 10 C -0.11 -2.34 5.32 -26.65 -0.14 -2.49 16 11 C 0.06 1.08 4.99 -3.83 -0.02 1.06 16 12 N -0.51 -9.53 3.93 -227.54 -0.89 -10.42 16 13 C 0.09 1.37 1.66 -68.41 -0.11 1.26 16 14 H 0.07 1.09 6.56 -51.93 -0.34 0.75 16 15 C -0.15 -2.10 4.33 -25.65 -0.11 -2.21 16 16 C -0.12 -1.24 5.31 -27.47 -0.15 -1.39 16 17 C -0.12 -1.12 5.61 -27.34 -0.15 -1.27 16 18 C -0.12 -1.03 5.26 -29.59 -0.16 -1.19 16 19 C -0.15 -1.53 4.93 -29.60 -0.15 -1.67 16 20 C 0.12 1.56 2.04 -27.34 -0.06 1.51 16 21 H 0.05 0.64 6.92 -51.93 -0.36 0.28 16 22 O -0.53 -7.92 10.95 -35.23 -0.39 -8.30 16 23 C 0.06 1.25 4.51 -3.83 -0.02 1.24 16 24 C -0.10 -2.50 5.12 -26.65 -0.14 -2.64 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 30 H 0.02 0.42 7.01 -51.92 -0.36 0.06 16 31 H 0.06 0.85 7.46 -51.93 -0.39 0.47 16 32 H 0.07 1.11 5.73 -51.93 -0.30 0.81 16 33 H 0.06 0.63 6.64 -51.93 -0.34 0.28 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.67 6.97 -51.93 -0.36 0.31 16 37 H 0.06 0.52 7.47 -51.93 -0.39 0.13 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.07 0.74 7.46 -51.93 -0.39 0.36 16 41 H 0.36 3.77 9.05 45.56 0.41 4.18 16 42 H 0.02 0.33 6.24 -51.93 -0.32 0.01 16 43 H 0.06 1.23 6.00 -51.94 -0.31 0.92 16 44 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 45 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 321.12 15.07 4.84 4.84 Total: -1.00 -30.32 321.12 -9.73 -40.05 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.11 Total: 2.34 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -1.78 Total: -19.86 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.26 Total: -35.89 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.39 Total: -8.30 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.32 -9.73 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397178473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.462 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds