Wall clock time and date at job start Mon Mar 30 2020 06:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99982 * 2 1 4 4 H 1.48503 * 109.47078 * 269.99899 * 3 2 1 5 5 H 1.48499 * 109.47310 * 30.00108 * 3 2 1 6 6 H 1.48501 * 109.46996 * 150.00164 * 3 2 1 7 7 C 1.37876 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.53115 * 109.52430 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.27846 * 182.44504 * 10 9 7 12 12 N 1.46848 * 109.52540 * 59.17607 * 11 10 9 13 13 C 1.46906 * 110.99708 * 174.16170 * 12 11 10 14 14 H 1.08995 * 108.85220 * 303.83674 * 13 12 11 15 15 C 1.54067 * 108.87492 * 62.40052 * 13 12 11 16 16 C 1.54005 * 112.85176 * 162.58932 * 15 13 12 17 17 C 1.50475 * 112.54849 * 41.55850 * 16 15 13 18 18 C 1.54247 * 108.52449 * 265.92935 * 17 16 15 19 19 C 1.45543 * 112.39943 * 79.97800 * 18 17 16 20 20 C 1.50480 * 108.87296 * 185.27568 * 13 12 11 21 21 H 1.09000 * 109.62959 * 264.97101 * 20 13 12 22 22 O 1.42900 * 109.62715 * 25.36454 * 20 13 12 23 23 C 1.46846 * 111.20160 * 298.25940 * 12 11 10 24 24 C 1.53042 * 109.52084 * 61.73866 * 23 12 11 25 25 H 0.97003 * 120.00295 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.57743 * 300.16319 * 9 7 2 27 27 H 1.09004 * 109.50539 * 302.38075 * 10 9 7 28 28 H 1.09002 * 109.50467 * 62.50303 * 10 9 7 29 29 H 1.08994 * 109.46662 * 179.19931 * 11 10 9 30 30 H 1.09008 * 109.46125 * 299.16244 * 11 10 9 31 31 H 1.09003 * 108.80823 * 283.34814 * 15 13 12 32 32 H 1.08996 * 108.81599 * 41.62679 * 15 13 12 33 33 H 1.08994 * 108.79336 * 280.80505 * 16 15 13 34 34 H 1.08995 * 108.83080 * 162.33457 * 16 15 13 35 35 H 1.08996 * 109.62933 * 146.21901 * 17 16 15 36 36 H 1.09001 * 109.63195 * 25.63758 * 17 16 15 37 37 H 1.09004 * 108.89527 * 319.22424 * 18 17 16 38 38 H 1.09001 * 108.81865 * 200.67798 * 18 17 16 39 39 H 1.09006 * 108.89069 * 177.30260 * 19 18 17 40 40 H 1.08998 * 108.81976 * 58.76841 * 19 18 17 41 41 H 0.96701 * 113.99783 * 179.97438 * 22 20 13 42 42 H 1.08998 * 109.45951 * 301.72898 * 23 12 11 43 43 H 1.08987 * 109.46449 * 181.75606 * 23 12 11 44 44 H 1.08997 * 109.50447 * 180.88153 * 24 23 12 45 45 H 1.08998 * 109.53365 * 60.78395 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2449 -3.6639 -0.0005 11 6 1.4751 -4.9851 -0.0622 12 7 0.6543 -5.0186 -1.2794 13 6 0.0081 -6.3277 -1.4427 14 1 0.7756 -7.1016 -1.4443 15 6 -0.9395 -6.5678 -0.2518 16 6 -1.9690 -7.6809 -0.5217 17 6 -1.3674 -8.8636 -1.2313 18 6 -1.5848 -8.6875 -2.7482 19 6 -0.6173 -7.7788 -3.3453 20 6 -0.7123 -6.3536 -2.7636 21 1 -1.7581 -6.0843 -2.6156 22 8 -0.1003 -5.4264 -3.6623 23 6 -0.3395 -3.9375 -1.2796 24 6 0.3762 -2.5849 -1.2544 25 1 -0.4851 0.8400 -0.0004 26 1 0.6218 -2.5577 0.8876 27 1 2.8998 -3.5835 -0.8682 28 1 2.8420 -3.6328 0.9109 29 1 2.1803 -5.8161 -0.0767 30 1 0.8307 -5.0711 0.8129 31 1 -0.3458 -6.8442 0.6195 32 1 -1.4708 -5.6416 -0.0330 33 1 -2.7736 -7.2741 -1.1341 34 1 -2.3843 -8.0142 0.4294 35 1 -1.8548 -9.7789 -0.8955 36 1 -0.2997 -8.9145 -1.0179 37 1 -2.5880 -8.2965 -2.9180 38 1 -1.4994 -9.6610 -3.2310 39 1 -0.7921 -7.7337 -4.4203 40 1 0.3857 -8.1666 -3.1673 41 1 -0.5155 -5.3920 -4.5350 42 1 -0.9752 -4.0284 -0.3990 43 1 -0.9520 -4.0075 -2.1784 44 1 -0.3617 -1.7829 -1.2388 45 1 1.0015 -2.4869 -2.1417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397178473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:30 Heat of formation + Delta-G solvation = -80.260405 kcal Electronic energy + Delta-G solvation = -22229.763653 eV Core-core repulsion = 19245.412715 eV Total energy + Delta-G solvation = -2984.350937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17739 -38.78075 -36.67325 -35.70863 -33.60242 -32.35858 -31.42349 -30.32417 -27.45163 -25.72854 -24.72542 -23.78210 -23.13429 -21.37843 -20.76615 -19.42091 -18.45835 -18.30203 -17.02765 -16.55587 -16.06397 -15.63748 -15.42943 -15.22817 -15.00987 -14.76039 -14.37442 -14.27795 -14.19946 -13.83770 -13.51343 -13.08254 -12.92856 -12.77730 -12.63001 -12.43736 -12.40979 -12.14449 -11.96076 -11.78809 -11.60471 -11.49418 -11.34023 -11.17748 -11.07955 -10.78300 -10.60634 -10.50556 -10.32469 -8.92750 -8.06797 -6.20442 1.40640 1.41529 1.51802 2.44384 3.01946 3.19549 3.45230 3.72504 3.86122 4.08338 4.11455 4.15984 4.22916 4.29303 4.37301 4.39137 4.43372 4.54620 4.60312 4.69027 4.75532 4.84441 4.96623 4.99094 5.01184 5.08071 5.11689 5.17532 5.24695 5.26695 5.29113 5.32568 5.35303 5.38983 5.46592 5.54509 5.60666 5.66749 6.02847 6.07244 6.40562 6.43162 6.45200 6.90977 7.13762 7.46921 8.97855 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037262 B = 0.004662 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.248759 B = 6004.856212 C = 6161.034353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.046 3.954 10 C -0.099 4.099 11 C 0.063 3.937 12 N -0.518 5.518 13 C 0.092 3.908 14 H 0.082 0.918 15 C -0.150 4.150 16 C -0.110 4.110 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.138 4.138 20 C 0.118 3.882 21 H 0.049 0.951 22 O -0.560 6.560 23 C 0.079 3.921 24 C -0.090 4.090 25 H 0.260 0.740 26 H -0.014 1.014 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.021 0.979 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.380 0.620 42 H 0.008 0.992 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 -18.883 -5.428 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.027 3.973 10 C -0.137 4.137 11 C -0.065 4.065 12 N -0.241 5.241 13 C -0.017 4.017 14 H 0.100 0.900 15 C -0.189 4.189 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.176 4.176 20 C 0.059 3.941 21 H 0.067 0.933 22 O -0.366 6.366 23 C -0.048 4.048 24 C -0.128 4.128 25 H 0.069 0.931 26 H 0.004 0.996 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.227 0.773 42 H 0.026 0.974 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.444 -18.577 -5.309 19.825 hybrid contribution -0.501 1.167 0.486 1.360 sum -4.946 -17.411 -4.823 18.731 Atomic orbital electron populations 1.70030 1.07182 1.27004 1.51587 1.25751 0.95700 1.02369 0.94803 0.85615 0.78745 0.79415 0.78230 1.20156 1.20732 1.19338 1.21595 0.92930 0.92377 1.50357 0.93268 1.18641 0.93110 0.92561 0.92952 1.21530 0.98000 0.94346 0.99781 1.22061 0.96067 0.97866 0.90534 1.62161 1.22985 1.02388 1.36552 1.21714 0.95467 0.91150 0.93371 0.90043 1.22587 0.98439 0.99307 0.98558 1.21270 0.97453 0.94958 1.01167 1.21384 1.01337 0.97774 0.95040 1.20442 0.99338 0.99863 0.95592 1.21098 1.00880 0.94566 1.01045 1.21476 0.94774 0.88912 0.88987 0.93324 1.86830 1.60376 1.62517 1.26827 1.21946 0.93073 0.91462 0.98368 1.21354 0.98910 0.94898 0.97659 0.93112 0.99630 0.93483 0.93066 0.90230 0.96065 0.92137 0.93526 0.92049 0.91573 0.90288 0.92007 0.91737 0.90529 0.90444 0.92015 0.77294 0.97367 0.90973 0.92484 0.95737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.16 11.37 21.45 0.24 -54.92 16 2 C 0.01 0.69 5.31 84.65 0.45 1.14 16 3 Si 0.95 45.36 29.54 68.60 2.03 47.39 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.53 -31.28 8.56 25.60 0.22 -31.06 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.05 2.47 2.16 -11.46 -0.02 2.45 16 10 C -0.10 -4.46 5.32 30.65 0.16 -4.30 16 11 C 0.06 2.36 4.99 86.33 0.43 2.79 16 12 N -0.52 -19.23 3.93 -873.79 -3.44 -22.67 16 13 C 0.09 2.60 1.66 44.46 0.07 2.67 16 14 H 0.08 2.22 6.56 -2.39 -0.02 2.20 16 15 C -0.15 -3.89 4.33 31.29 0.14 -3.76 16 16 C -0.11 -2.11 5.31 30.12 0.16 -1.95 16 17 C -0.12 -1.83 5.61 30.20 0.17 -1.66 16 18 C -0.11 -1.65 5.26 28.74 0.15 -1.50 16 19 C -0.14 -2.43 4.93 28.73 0.14 -2.29 16 20 C 0.12 2.88 2.04 30.20 0.06 2.94 16 21 H 0.05 1.19 6.92 -2.39 -0.02 1.18 16 22 O -0.56 -16.02 10.95 -148.98 -1.63 -17.66 16 23 C 0.08 3.33 4.51 86.33 0.39 3.72 16 24 C -0.09 -4.64 5.12 30.65 0.16 -4.49 16 25 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 26 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16 30 H 0.02 0.81 7.01 -2.38 -0.02 0.79 16 31 H 0.06 1.58 7.46 -2.39 -0.02 1.56 16 32 H 0.05 1.44 5.73 -2.39 -0.01 1.43 16 33 H 0.06 1.16 6.64 -2.39 -0.02 1.15 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 1.05 6.97 -2.39 -0.02 1.03 16 37 H 0.06 0.90 7.47 -2.38 -0.02 0.88 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.15 8.08 -2.38 -0.02 1.14 16 40 H 0.06 1.18 7.46 -2.39 -0.02 1.16 16 41 H 0.38 7.36 9.05 -74.06 -0.67 6.69 16 42 H 0.01 0.36 6.24 -2.39 -0.01 0.35 16 43 H 0.07 2.88 6.00 -2.39 -0.01 2.86 16 44 H 0.06 3.28 6.17 -2.39 -0.01 3.26 16 45 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -66.61 321.12 0.17 -66.45 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.29 Total: 16.70 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 2.68 Total: -35.29 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -3.19 Total: -77.59 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -1.63 Total: -17.66 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -66.61 0.17 -66.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397178473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.814 kcal (2) G-P(sol) polarization free energy of solvation -66.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds