Wall clock time and date at job start Mon Mar 30 2020 06:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99956 * 2 1 4 4 H 1.48491 * 109.47510 * 240.00125 * 3 2 1 5 5 H 1.48505 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46965 * 119.99699 * 3 2 1 7 7 C 1.37872 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.52480 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.28032 * 182.44448 * 10 9 7 12 12 N 1.46846 * 109.52241 * 59.17868 * 11 10 9 13 13 C 1.46899 * 111.00003 * 174.16368 * 12 11 10 14 14 H 1.09000 * 108.85728 * 53.55796 * 13 12 11 15 15 C 1.50476 * 108.87570 * 294.99908 * 13 12 11 16 16 C 1.54245 * 108.52395 * 145.07061 * 15 13 12 17 17 C 1.45539 * 112.40355 * 79.99003 * 16 15 13 18 18 C 1.54246 * 112.40442 * 298.06261 * 17 16 15 19 19 C 1.50470 * 108.51998 * 79.99135 * 18 17 16 20 20 C 1.54064 * 108.87924 * 172.02446 * 13 12 11 21 21 H 1.08994 * 108.81383 * 283.23977 * 20 13 12 22 22 O 1.42900 * 108.81267 * 41.63524 * 20 13 12 23 23 C 1.46847 * 111.20058 * 298.26018 * 12 11 10 24 24 C 1.53036 * 109.52552 * 61.74022 * 23 12 11 25 25 H 0.97004 * 120.00104 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.57498 * 300.16376 * 9 7 2 27 27 H 1.09004 * 109.50084 * 62.49799 * 10 9 7 28 28 H 1.09004 * 109.49980 * 302.38447 * 10 9 7 29 29 H 1.09002 * 109.46159 * 299.16359 * 11 10 9 30 30 H 1.08993 * 109.46119 * 179.19497 * 11 10 9 31 31 H 1.09008 * 109.62782 * 25.36351 * 15 13 12 32 32 H 1.08998 * 109.79025 * 264.87741 * 15 13 12 33 33 H 1.08998 * 108.89418 * 319.23050 * 16 15 13 34 34 H 1.09006 * 108.81819 * 200.69250 * 16 15 13 35 35 H 1.09000 * 108.89289 * 177.31103 * 17 16 15 36 36 H 1.08991 * 108.81903 * 58.76623 * 17 16 15 37 37 H 1.09003 * 109.62847 * 199.70437 * 18 17 16 38 38 H 1.09001 * 109.62858 * 320.28113 * 18 17 16 39 39 H 1.08997 * 108.87944 * 26.62421 * 19 18 17 40 40 H 1.09003 * 108.87843 * 145.07009 * 19 18 17 41 41 H 0.96708 * 113.99925 * 180.02562 * 22 20 13 42 42 H 1.09002 * 109.46496 * 181.76138 * 23 12 11 43 43 H 1.09004 * 109.46119 * 301.72374 * 23 12 11 44 44 H 1.08992 * 109.50395 * 180.88172 * 24 23 12 45 45 H 1.09005 * 109.49901 * 60.76270 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4753 -4.9851 -0.0621 12 7 0.6545 -5.0185 -1.2794 13 6 0.0083 -6.3276 -1.4428 14 1 -0.5376 -6.5673 -0.5303 15 6 1.0703 -7.3707 -1.6629 16 6 0.6165 -8.6818 -0.9891 17 6 -0.3409 -9.4197 -1.7999 18 6 -1.6420 -8.6269 -2.0404 19 6 -1.3997 -7.6345 -3.1451 20 6 -0.9910 -6.2477 -2.6126 21 1 -1.8859 -5.7247 -2.2755 22 8 -0.3959 -5.5025 -3.6769 23 6 -0.3392 -3.9374 -1.2797 24 6 0.3764 -2.5849 -1.2544 25 1 -0.4850 0.8401 -0.0004 26 1 0.6219 -2.5576 0.8876 27 1 2.8422 -3.6326 0.9109 28 1 2.8999 -3.5834 -0.8682 29 1 0.8309 -5.0711 0.8128 30 1 2.1805 -5.8159 -0.0767 31 1 2.0087 -7.0370 -1.2198 32 1 1.2085 -7.5368 -2.7313 33 1 0.1577 -8.4450 -0.0292 34 1 1.4908 -9.3095 -0.8166 35 1 -0.5851 -10.3541 -1.2946 36 1 0.1162 -9.6484 -2.7625 37 1 -2.4392 -9.3111 -2.3310 38 1 -1.9229 -8.0990 -1.1290 39 1 -0.6067 -8.0120 -3.7907 40 1 -2.3117 -7.5317 -3.7332 41 1 -0.9630 -5.4056 -4.4543 42 1 -0.9519 -4.0074 -2.1785 43 1 -0.9751 -4.0284 -0.3990 44 1 -0.3616 -1.7830 -1.2388 45 1 1.0018 -2.4875 -2.1418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397178474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:33 Heat of formation + Delta-G solvation = -61.010982 kcal Electronic energy + Delta-G solvation = -22138.664036 eV Core-core repulsion = 19155.147817 eV Total energy + Delta-G solvation = -2983.516220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88959 -37.29889 -35.90065 -33.87015 -31.84157 -31.33305 -29.77512 -29.00280 -25.62048 -24.57526 -23.65232 -21.62804 -21.49118 -20.55858 -19.05028 -18.45132 -16.88891 -16.64083 -16.00729 -15.24535 -14.61763 -14.30170 -14.18504 -13.72510 -13.59716 -13.46903 -13.06501 -12.66131 -12.56964 -12.43909 -12.16177 -11.87429 -11.70457 -11.23181 -10.95983 -10.81699 -10.80083 -10.68449 -10.55480 -10.46446 -10.32078 -10.08544 -10.02451 -9.80751 -9.58239 -9.28335 -8.80664 -8.56797 -8.19708 -7.49658 -5.88896 -3.93800 3.38149 3.42044 3.45405 4.25976 4.43907 4.52003 4.61995 4.73457 4.87762 5.08460 5.20624 5.23729 5.33410 5.38397 5.41357 5.62674 5.66782 5.83991 5.91758 5.95096 5.96928 6.02726 6.05703 6.06557 6.14003 6.22951 6.29471 6.34707 6.38589 6.48142 6.61518 6.76918 6.80343 6.98188 7.20512 7.33646 7.59147 7.76613 7.81605 7.95481 8.01009 8.18220 8.28278 8.58552 9.09670 9.69858 11.17209 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038311 B = 0.004622 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.683336 B = 6056.845759 C = 6447.450523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.056 3.944 12 N -0.516 5.516 13 C 0.098 3.902 14 H 0.038 0.962 15 C -0.111 4.111 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.116 4.116 19 C -0.150 4.150 20 C 0.113 3.887 21 H 0.046 0.954 22 O -0.538 6.538 23 C 0.058 3.942 24 C -0.100 4.100 25 H 0.258 0.742 26 H 0.018 0.982 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.018 0.982 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.363 0.637 42 H 0.065 0.935 43 H 0.011 0.989 44 H 0.088 0.912 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 -17.476 -4.879 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.072 4.072 12 N -0.241 5.241 13 C -0.011 4.011 14 H 0.055 0.945 15 C -0.148 4.148 16 C -0.160 4.160 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.189 4.189 20 C 0.054 3.946 21 H 0.064 0.936 22 O -0.341 6.341 23 C -0.069 4.069 24 C -0.139 4.139 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.208 0.792 42 H 0.083 0.917 43 H 0.029 0.971 44 H 0.107 0.893 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.215 -17.228 -4.839 18.181 hybrid contribution -0.688 0.733 0.344 1.063 sum -3.903 -16.495 -4.494 17.536 Atomic orbital electron populations 1.69880 1.05854 1.26241 1.51273 1.24958 0.94816 0.98907 0.95310 0.86710 0.79623 0.83410 0.78528 1.20322 1.21428 1.20441 1.21193 0.92815 0.90776 1.49909 0.92890 1.18683 0.92726 0.91650 0.94008 1.21657 0.98696 0.93846 1.00064 1.22213 0.96100 0.99232 0.89657 1.61984 1.23647 1.01185 1.37296 1.21404 0.93761 0.91301 0.94637 0.94456 1.21454 0.98834 0.92970 1.01583 1.20532 0.98909 0.97227 0.99314 1.20488 0.95721 0.98427 1.00613 1.21274 0.97393 0.97596 0.99110 1.22120 1.01503 0.96277 0.98954 1.22279 0.94574 0.89753 0.88029 0.93647 1.86838 1.45078 1.75247 1.26899 1.22311 0.93229 0.93029 0.98302 1.21601 1.00025 0.93050 0.99180 0.93170 0.96415 0.93457 0.92507 0.96333 0.92201 0.90599 0.91097 0.92402 0.92291 0.92610 0.92187 0.91964 0.91614 0.90923 0.92311 0.79158 0.91657 0.97099 0.89342 0.93805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 11.37 55.43 0.63 -25.46 16 2 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.44 8.56 -34.44 -0.29 -14.74 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 10 C -0.10 -2.32 5.32 -26.65 -0.14 -2.46 16 11 C 0.06 1.06 5.23 -3.84 -0.02 1.04 16 12 N -0.52 -9.73 4.08 -227.54 -0.93 -10.65 16 13 C 0.10 1.47 1.34 -68.42 -0.09 1.38 16 14 H 0.04 0.57 6.59 -51.93 -0.34 0.23 16 15 C -0.11 -1.47 5.09 -27.34 -0.14 -1.61 16 16 C -0.12 -1.30 5.26 -29.60 -0.16 -1.45 16 17 C -0.12 -1.07 5.26 -29.60 -0.16 -1.22 16 18 C -0.12 -1.09 5.61 -27.34 -0.15 -1.25 16 19 C -0.15 -1.53 4.88 -27.44 -0.13 -1.66 16 20 C 0.11 1.51 2.21 -25.62 -0.06 1.45 16 21 H 0.05 0.63 7.24 -51.93 -0.38 0.25 16 22 O -0.54 -7.86 11.40 -35.23 -0.40 -8.26 16 23 C 0.06 1.22 4.77 -3.83 -0.02 1.20 16 24 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 1.01 5.95 -51.93 -0.31 0.70 16 31 H 0.08 1.09 5.70 -51.92 -0.30 0.80 16 32 H 0.07 0.97 7.00 -51.93 -0.36 0.61 16 33 H 0.06 0.64 7.47 -51.93 -0.39 0.25 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.55 7.47 -51.93 -0.39 0.16 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.67 6.97 -51.93 -0.36 0.31 16 39 H 0.07 0.76 6.63 -51.93 -0.34 0.41 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.36 3.72 9.04 45.56 0.41 4.13 16 42 H 0.07 1.28 5.28 -51.93 -0.27 1.00 16 43 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 45 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -30.27 322.82 -9.77 -40.03 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.12 Total: 1.96 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -1.79 Total: -19.28 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.30 Total: -36.11 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.40 Total: -8.26 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.27 -9.77 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397178474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.980 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds