Wall clock time and date at job start Mon Mar 30 2020 06:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99956 * 2 1 4 4 H 1.48491 * 109.47510 * 240.00125 * 3 2 1 5 5 H 1.48505 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46965 * 119.99699 * 3 2 1 7 7 C 1.37872 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.52480 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.28032 * 182.44448 * 10 9 7 12 12 N 1.46846 * 109.52241 * 59.17868 * 11 10 9 13 13 C 1.46899 * 111.00003 * 174.16368 * 12 11 10 14 14 H 1.09000 * 108.85728 * 53.55796 * 13 12 11 15 15 C 1.50476 * 108.87570 * 294.99908 * 13 12 11 16 16 C 1.54245 * 108.52395 * 145.07061 * 15 13 12 17 17 C 1.45539 * 112.40355 * 79.99003 * 16 15 13 18 18 C 1.54246 * 112.40442 * 298.06261 * 17 16 15 19 19 C 1.50470 * 108.51998 * 79.99135 * 18 17 16 20 20 C 1.54064 * 108.87924 * 172.02446 * 13 12 11 21 21 H 1.08994 * 108.81383 * 283.23977 * 20 13 12 22 22 O 1.42900 * 108.81267 * 41.63524 * 20 13 12 23 23 C 1.46847 * 111.20058 * 298.26018 * 12 11 10 24 24 C 1.53036 * 109.52552 * 61.74022 * 23 12 11 25 25 H 0.97004 * 120.00104 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.57498 * 300.16376 * 9 7 2 27 27 H 1.09004 * 109.50084 * 62.49799 * 10 9 7 28 28 H 1.09004 * 109.49980 * 302.38447 * 10 9 7 29 29 H 1.09002 * 109.46159 * 299.16359 * 11 10 9 30 30 H 1.08993 * 109.46119 * 179.19497 * 11 10 9 31 31 H 1.09008 * 109.62782 * 25.36351 * 15 13 12 32 32 H 1.08998 * 109.79025 * 264.87741 * 15 13 12 33 33 H 1.08998 * 108.89418 * 319.23050 * 16 15 13 34 34 H 1.09006 * 108.81819 * 200.69250 * 16 15 13 35 35 H 1.09000 * 108.89289 * 177.31103 * 17 16 15 36 36 H 1.08991 * 108.81903 * 58.76623 * 17 16 15 37 37 H 1.09003 * 109.62847 * 199.70437 * 18 17 16 38 38 H 1.09001 * 109.62858 * 320.28113 * 18 17 16 39 39 H 1.08997 * 108.87944 * 26.62421 * 19 18 17 40 40 H 1.09003 * 108.87843 * 145.07009 * 19 18 17 41 41 H 0.96708 * 113.99925 * 180.02562 * 22 20 13 42 42 H 1.09002 * 109.46496 * 181.76138 * 23 12 11 43 43 H 1.09004 * 109.46119 * 301.72374 * 23 12 11 44 44 H 1.08992 * 109.50395 * 180.88172 * 24 23 12 45 45 H 1.09005 * 109.49901 * 60.76270 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4753 -4.9851 -0.0621 12 7 0.6545 -5.0185 -1.2794 13 6 0.0083 -6.3276 -1.4428 14 1 -0.5376 -6.5673 -0.5303 15 6 1.0703 -7.3707 -1.6629 16 6 0.6165 -8.6818 -0.9891 17 6 -0.3409 -9.4197 -1.7999 18 6 -1.6420 -8.6269 -2.0404 19 6 -1.3997 -7.6345 -3.1451 20 6 -0.9910 -6.2477 -2.6126 21 1 -1.8859 -5.7247 -2.2755 22 8 -0.3959 -5.5025 -3.6769 23 6 -0.3392 -3.9374 -1.2797 24 6 0.3764 -2.5849 -1.2544 25 1 -0.4850 0.8401 -0.0004 26 1 0.6219 -2.5576 0.8876 27 1 2.8422 -3.6326 0.9109 28 1 2.8999 -3.5834 -0.8682 29 1 0.8309 -5.0711 0.8128 30 1 2.1805 -5.8159 -0.0767 31 1 2.0087 -7.0370 -1.2198 32 1 1.2085 -7.5368 -2.7313 33 1 0.1577 -8.4450 -0.0292 34 1 1.4908 -9.3095 -0.8166 35 1 -0.5851 -10.3541 -1.2946 36 1 0.1162 -9.6484 -2.7625 37 1 -2.4392 -9.3111 -2.3310 38 1 -1.9229 -8.0990 -1.1290 39 1 -0.6067 -8.0120 -3.7907 40 1 -2.3117 -7.5317 -3.7332 41 1 -0.9630 -5.4056 -4.4543 42 1 -0.9519 -4.0074 -2.1785 43 1 -0.9751 -4.0284 -0.3990 44 1 -0.3616 -1.7830 -1.2388 45 1 1.0018 -2.4875 -2.1418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397178474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:32 Heat of formation + Delta-G solvation = -80.783555 kcal Electronic energy + Delta-G solvation = -22139.521440 eV Core-core repulsion = 19155.147817 eV Total energy + Delta-G solvation = -2984.373623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.07579 -38.77971 -36.90560 -35.64159 -33.49159 -32.48124 -31.42345 -30.46897 -27.45120 -25.68930 -24.94643 -23.27391 -23.11980 -21.44020 -20.36603 -20.10652 -18.49602 -17.98425 -17.51173 -16.57938 -16.25336 -15.62140 -15.26340 -15.10196 -15.03170 -14.64109 -14.39170 -14.24477 -14.01954 -13.96795 -13.58172 -13.06479 -12.98193 -12.87661 -12.67328 -12.51311 -12.33322 -12.01870 -11.94587 -11.83788 -11.52000 -11.38281 -11.35649 -11.19641 -11.16342 -10.74663 -10.58204 -10.53848 -10.34364 -9.03017 -8.06968 -6.20751 1.40898 1.43064 1.50483 2.44328 2.96375 3.19371 3.45246 3.69329 3.84010 4.01310 4.12551 4.21953 4.26936 4.31944 4.36486 4.37861 4.44504 4.49640 4.61340 4.68904 4.80712 4.82623 4.95212 4.98985 5.01134 5.05947 5.11379 5.16918 5.20678 5.25433 5.31003 5.33985 5.37123 5.44324 5.54731 5.56793 5.59637 5.65075 6.01749 6.05596 6.38740 6.41459 6.44621 6.90391 7.04979 7.46646 8.97573 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038311 B = 0.004622 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.683336 B = 6056.845759 C = 6447.450523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.098 4.098 11 C 0.062 3.938 12 N -0.525 5.525 13 C 0.095 3.905 14 H 0.037 0.963 15 C -0.106 4.106 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.139 4.139 20 C 0.112 3.888 21 H 0.037 0.963 22 O -0.563 6.563 23 C 0.074 3.926 24 C -0.089 4.089 25 H 0.260 0.740 26 H -0.015 1.015 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.015 0.985 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.381 0.619 42 H 0.078 0.922 43 H 0.000 1.000 44 H 0.058 0.942 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 -19.265 -5.493 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.136 4.136 11 C -0.066 4.066 12 N -0.249 5.249 13 C -0.013 4.013 14 H 0.055 0.945 15 C -0.143 4.143 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.178 4.178 20 C 0.053 3.947 21 H 0.055 0.945 22 O -0.369 6.369 23 C -0.054 4.054 24 C -0.128 4.128 25 H 0.069 0.931 26 H 0.003 0.997 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.229 0.771 42 H 0.097 0.903 43 H 0.019 0.981 44 H 0.076 0.924 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.096 -19.037 -5.462 20.046 hybrid contribution -0.738 1.297 0.530 1.584 sum -3.834 -17.740 -4.932 18.808 Atomic orbital electron populations 1.70024 1.07204 1.27088 1.51511 1.25758 0.95700 1.02392 0.94777 0.85667 0.78437 0.79074 0.78798 1.19741 1.20794 1.19627 1.21563 0.92959 0.92316 1.50476 0.93168 1.18654 0.93149 0.92663 0.92913 1.21525 0.97969 0.94158 0.99926 1.22136 0.96389 0.98292 0.89784 1.61941 1.23485 1.02533 1.36989 1.21601 0.94645 0.89439 0.95640 0.94480 1.21403 0.97571 0.93730 1.01643 1.20488 0.99823 0.95990 0.99011 1.20487 0.95198 0.98771 1.00789 1.21309 0.98169 0.97656 0.98319 1.22017 1.02237 0.94254 0.99246 1.22300 0.93353 0.91663 0.87378 0.94506 1.86769 1.46364 1.75770 1.27967 1.22034 0.93120 0.91814 0.98447 1.21351 0.98942 0.94713 0.97763 0.93101 0.99683 0.92909 0.93311 0.96705 0.89314 0.91803 0.91313 0.92790 0.91043 0.91002 0.91682 0.90059 0.92625 0.90801 0.90571 0.77077 0.90332 0.98148 0.92383 0.95597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.11 11.37 21.45 0.24 -54.86 16 2 C 0.01 0.69 5.31 84.65 0.45 1.14 16 3 Si 0.95 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -31.20 8.56 25.60 0.22 -30.98 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.04 2.41 2.16 -11.46 -0.02 2.38 16 10 C -0.10 -4.40 5.32 30.65 0.16 -4.23 16 11 C 0.06 2.32 5.23 86.33 0.45 2.77 16 12 N -0.52 -19.63 4.08 -873.82 -3.56 -23.19 16 13 C 0.09 2.75 1.34 44.46 0.06 2.81 16 14 H 0.04 1.10 6.59 -2.39 -0.02 1.08 16 15 C -0.11 -2.61 5.09 30.20 0.15 -2.46 16 16 C -0.12 -2.14 5.26 28.74 0.15 -1.99 16 17 C -0.12 -1.75 5.26 28.74 0.15 -1.60 16 18 C -0.12 -1.85 5.61 30.20 0.17 -1.68 16 19 C -0.14 -2.46 4.88 30.14 0.15 -2.32 16 20 C 0.11 2.83 2.21 31.32 0.07 2.90 16 21 H 0.04 0.98 7.24 -2.39 -0.02 0.96 16 22 O -0.56 -15.79 11.40 -148.98 -1.70 -17.49 16 23 C 0.07 3.12 4.77 86.33 0.41 3.53 16 24 C -0.09 -4.61 5.12 30.65 0.16 -4.45 16 25 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 26 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 27 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 2.86 5.95 -2.39 -0.01 2.84 16 31 H 0.06 1.72 5.70 -2.38 -0.01 1.71 16 32 H 0.07 1.74 7.00 -2.39 -0.02 1.72 16 33 H 0.05 1.06 7.47 -2.39 -0.02 1.04 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.96 7.47 -2.39 -0.02 0.94 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 1.01 6.97 -2.39 -0.02 0.99 16 39 H 0.07 1.32 6.63 -2.39 -0.02 1.31 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.38 7.28 9.04 -74.05 -0.67 6.61 16 42 H 0.08 3.11 5.28 -2.39 -0.01 3.09 16 43 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 44 H 0.06 3.33 6.17 -2.39 -0.01 3.31 16 45 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -66.36 322.82 0.03 -66.33 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.29 Total: 16.14 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: 2.73 Total: -34.18 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -3.32 Total: -78.05 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -1.70 Total: -17.49 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.36 0.03 -66.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397178474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.456 kcal (2) G-P(sol) polarization free energy of solvation -66.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds