Wall clock time and date at job start Mon Mar 30 2020 06:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99678 * 2 1 4 4 H 1.48504 * 109.47267 * 269.99913 * 3 2 1 5 5 H 1.48502 * 109.47117 * 30.00379 * 3 2 1 6 6 H 1.48500 * 109.47022 * 150.00314 * 3 2 1 7 7 C 1.37875 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.53125 * 109.52208 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.27554 * 182.44121 * 10 9 7 12 12 N 1.46850 * 109.52271 * 59.18083 * 11 10 9 13 13 C 1.46906 * 110.99551 * 174.15781 * 12 11 10 14 14 H 1.08999 * 108.84819 * 70.48623 * 13 12 11 15 15 C 1.50472 * 108.87330 * 189.03759 * 13 12 11 16 16 C 1.54230 * 108.51757 * 214.93306 * 15 13 12 17 17 C 1.45550 * 112.41229 * 280.00818 * 16 15 13 18 18 C 1.54239 * 112.40115 * 61.93166 * 17 16 15 19 19 C 1.50470 * 108.53117 * 280.02292 * 18 17 16 20 20 C 1.54064 * 108.87972 * 312.01663 * 13 12 11 21 21 H 1.09004 * 108.81181 * 76.64797 * 20 13 12 22 22 O 1.42901 * 108.81368 * 318.37325 * 20 13 12 23 23 C 1.46848 * 111.19588 * 298.25346 * 12 11 10 24 24 C 1.53032 * 109.52249 * 61.74782 * 23 12 11 25 25 H 0.96994 * 120.00710 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.57372 * 300.15424 * 9 7 2 27 27 H 1.08999 * 109.50370 * 302.38105 * 10 9 7 28 28 H 1.08996 * 109.50366 * 62.50131 * 10 9 7 29 29 H 1.09001 * 109.46017 * 179.19387 * 11 10 9 30 30 H 1.08994 * 109.46513 * 299.16292 * 11 10 9 31 31 H 1.09000 * 109.63464 * 334.64583 * 15 13 12 32 32 H 1.09009 * 109.62714 * 95.03129 * 15 13 12 33 33 H 1.09008 * 108.89391 * 40.75775 * 16 15 13 34 34 H 1.08993 * 108.90121 * 159.24857 * 16 15 13 35 35 H 1.08997 * 108.89405 * 182.68692 * 17 16 15 36 36 H 1.08996 * 108.89264 * 301.18221 * 17 16 15 37 37 H 1.09005 * 109.62784 * 39.73832 * 18 17 16 38 38 H 1.09004 * 109.62464 * 160.30882 * 18 17 16 39 39 H 1.08993 * 108.87926 * 214.92326 * 19 18 17 40 40 H 1.08997 * 108.87647 * 333.47476 * 19 18 17 41 41 H 0.96696 * 113.99698 * 180.02562 * 22 20 13 42 42 H 1.08993 * 109.46274 * 301.72950 * 23 12 11 43 43 H 1.09004 * 109.45871 * 181.76153 * 23 12 11 44 44 H 1.09005 * 109.50344 * 180.87868 * 24 23 12 45 45 H 1.08997 * 109.50532 * 60.75578 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6638 -0.0005 11 6 1.4754 -4.9851 -0.0621 12 7 0.6546 -5.0186 -1.2793 13 6 0.0084 -6.3278 -1.4426 14 1 -0.7650 -6.4360 -0.6822 15 6 -0.6338 -6.3875 -2.8021 16 6 -1.9339 -7.2101 -2.6940 17 6 -1.6851 -8.6442 -2.6982 18 6 -0.8295 -9.0958 -1.4970 19 6 0.6140 -8.7966 -1.7986 20 6 1.0626 -7.4328 -1.2395 21 1 1.2604 -7.5381 -0.1727 22 8 2.2718 -7.0419 -1.8930 23 6 -0.3392 -3.9375 -1.2795 24 6 0.3764 -2.5850 -1.2544 25 1 -0.4851 0.8399 0.0004 26 1 0.6221 -2.5577 0.8877 27 1 2.9000 -3.5834 -0.8682 28 1 2.8423 -3.6327 0.9108 29 1 2.1807 -5.8160 -0.0767 30 1 0.8311 -5.0711 0.8129 31 1 -0.8662 -5.3782 -3.1420 32 1 0.0468 -6.8638 -3.5079 33 1 -2.4445 -6.9432 -1.7687 34 1 -2.5800 -6.9615 -3.5358 35 1 -2.6404 -9.1682 -2.6681 36 1 -1.1677 -8.9099 -3.6200 37 1 -1.1371 -8.5526 -0.6034 38 1 -0.9562 -10.1670 -1.3394 39 1 1.2351 -9.5784 -1.3616 40 1 0.7558 -8.7968 -2.8793 41 1 2.9883 -7.6862 -1.8125 42 1 -0.9749 -4.0284 -0.3988 43 1 -0.9519 -4.0076 -2.1783 44 1 -0.3617 -1.7830 -1.2387 45 1 1.0018 -2.4876 -2.1417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397178476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:35 Heat of formation + Delta-G solvation = -61.149871 kcal Electronic energy + Delta-G solvation = -22123.898276 eV Core-core repulsion = 19140.376033 eV Total energy + Delta-G solvation = -2983.522243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.89914 -37.29928 -35.93482 -33.86643 -31.91640 -31.27887 -29.69497 -29.09985 -25.60802 -24.58355 -23.64596 -21.76876 -21.36411 -20.55207 -19.07068 -18.46105 -16.92134 -16.62766 -16.04300 -15.22694 -14.61884 -14.31764 -14.18362 -13.72849 -13.62185 -13.43560 -13.07891 -12.68993 -12.56264 -12.40180 -12.21497 -11.89862 -11.61070 -11.37647 -10.92965 -10.89241 -10.71457 -10.62782 -10.50565 -10.48851 -10.27057 -10.15255 -10.02534 -9.83361 -9.62780 -9.29438 -8.78157 -8.58282 -8.20863 -7.49810 -5.89526 -3.94352 3.36432 3.42637 3.46304 4.23764 4.43032 4.51796 4.61095 4.72635 4.87387 5.07586 5.18768 5.23125 5.34354 5.37782 5.40779 5.62642 5.66706 5.84727 5.92393 5.96413 5.97928 6.02736 6.05848 6.10054 6.17250 6.22282 6.27055 6.36590 6.40842 6.50364 6.55260 6.77138 6.80589 7.01687 7.23370 7.30985 7.56232 7.74320 7.81742 7.91776 7.99624 8.17010 8.26750 8.58177 9.09468 9.69495 11.16644 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.004623 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.008699 B = 6055.235508 C = 6517.224314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.104 4.104 11 C 0.061 3.939 12 N -0.516 5.516 13 C 0.098 3.902 14 H 0.038 0.962 15 C -0.111 4.111 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.116 4.116 19 C -0.150 4.150 20 C 0.113 3.887 21 H 0.044 0.956 22 O -0.538 6.538 23 C 0.053 3.947 24 C -0.102 4.102 25 H 0.258 0.742 26 H 0.018 0.982 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.012 0.988 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.363 0.637 42 H 0.017 0.983 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 -18.416 -3.793 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.141 4.141 11 C -0.066 4.066 12 N -0.241 5.241 13 C -0.011 4.011 14 H 0.056 0.944 15 C -0.149 4.149 16 C -0.160 4.160 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.188 4.188 20 C 0.053 3.947 21 H 0.062 0.938 22 O -0.341 6.341 23 C -0.074 4.074 24 C -0.140 4.140 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.030 0.970 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.208 0.792 42 H 0.035 0.965 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.458 -17.668 -4.329 18.356 hybrid contribution 0.164 0.237 0.913 0.957 sum -2.295 -17.432 -3.416 17.911 Atomic orbital electron populations 1.69881 1.05852 1.26159 1.51390 1.24964 0.94818 0.98927 0.95326 0.86649 0.79878 0.83746 0.78031 1.20755 1.21396 1.20029 1.21237 0.92874 0.90751 1.49724 0.92820 1.18685 0.92745 0.91793 0.93858 1.21637 0.98657 0.93846 1.00002 1.22159 0.95815 0.99662 0.89008 1.61982 1.22953 1.00925 1.38257 1.21417 0.93131 0.89569 0.97004 0.94415 1.21447 0.95455 1.01001 0.96974 1.20524 0.98143 0.95341 1.02001 1.20488 0.99728 0.96724 0.98287 1.21273 0.94732 1.00592 0.98776 1.22113 0.97103 0.97103 1.02504 1.22306 0.85639 0.92109 0.94598 0.93785 1.86841 1.21834 1.47599 1.77838 1.22367 0.93328 0.93302 0.98416 1.21630 1.00085 0.92921 0.99382 0.93208 0.96400 0.92439 0.93661 0.91515 0.96956 0.90391 0.91137 0.92362 0.92220 0.92606 0.92198 0.91625 0.91975 0.92346 0.90869 0.79238 0.96451 0.92376 0.89154 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 11.37 55.43 0.63 -25.42 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.41 8.56 -34.44 -0.29 -14.71 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.05 1.24 2.16 -91.64 -0.20 1.04 16 10 C -0.10 -2.32 5.32 -26.65 -0.14 -2.46 16 11 C 0.06 1.18 4.77 -3.83 -0.02 1.16 16 12 N -0.52 -9.73 4.07 -227.54 -0.93 -10.65 16 13 C 0.10 1.47 1.34 -68.42 -0.09 1.38 16 14 H 0.04 0.58 6.59 -51.93 -0.34 0.24 16 15 C -0.11 -1.53 5.09 -27.35 -0.14 -1.67 16 16 C -0.12 -1.36 5.26 -29.60 -0.16 -1.51 16 17 C -0.11 -1.08 5.26 -29.60 -0.16 -1.24 16 18 C -0.12 -1.08 5.61 -27.35 -0.15 -1.23 16 19 C -0.15 -1.48 4.89 -27.44 -0.13 -1.61 16 20 C 0.11 1.44 2.21 -25.62 -0.06 1.38 16 21 H 0.04 0.56 7.23 -51.93 -0.38 0.19 16 22 O -0.54 -7.44 11.41 -35.23 -0.40 -7.84 16 23 C 0.05 1.09 5.23 -3.84 -0.02 1.07 16 24 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.17 5.29 -51.93 -0.27 0.89 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 1.20 5.69 -51.93 -0.30 0.91 16 32 H 0.07 0.98 6.99 -51.92 -0.36 0.62 16 33 H 0.06 0.67 7.47 -51.92 -0.39 0.28 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.55 7.47 -51.93 -0.39 0.17 16 37 H 0.07 0.66 6.97 -51.93 -0.36 0.30 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.75 6.63 -51.93 -0.34 0.41 16 41 H 0.36 3.38 9.04 45.56 0.41 3.79 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.10 5.94 -51.93 -0.31 0.80 16 44 H 0.09 2.45 6.18 -51.93 -0.32 2.13 16 45 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -30.22 322.81 -9.76 -39.98 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.12 Total: 1.72 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -1.79 Total: -19.43 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.30 Total: -36.07 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.40 Total: -7.84 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.22 -9.76 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397178476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.165 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds