Wall clock time and date at job start Mon Mar 30 2020 06:50:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86800 * 119.99678 * 2 1
4 4 H 1.48504 * 109.47267 * 269.99913 * 3 2 1
5 5 H 1.48502 * 109.47117 * 30.00379 * 3 2 1
6 6 H 1.48500 * 109.47022 * 150.00314 * 3 2 1
7 7 C 1.37875 * 120.00206 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00187 * 179.97438 * 7 2 1
9 9 C 1.50700 * 120.00041 * 359.97438 * 7 2 1
10 10 C 1.53125 * 109.52208 * 180.02562 * 9 7 2
11 11 C 1.53039 * 109.27554 * 182.44121 * 10 9 7
12 12 N 1.46850 * 109.52271 * 59.18083 * 11 10 9
13 13 C 1.46906 * 110.99551 * 174.15781 * 12 11 10
14 14 H 1.08999 * 108.84819 * 70.48623 * 13 12 11
15 15 C 1.50472 * 108.87330 * 189.03759 * 13 12 11
16 16 C 1.54230 * 108.51757 * 214.93306 * 15 13 12
17 17 C 1.45550 * 112.41229 * 280.00818 * 16 15 13
18 18 C 1.54239 * 112.40115 * 61.93166 * 17 16 15
19 19 C 1.50470 * 108.53117 * 280.02292 * 18 17 16
20 20 C 1.54064 * 108.87972 * 312.01663 * 13 12 11
21 21 H 1.09004 * 108.81181 * 76.64797 * 20 13 12
22 22 O 1.42901 * 108.81368 * 318.37325 * 20 13 12
23 23 C 1.46848 * 111.19588 * 298.25346 * 12 11 10
24 24 C 1.53032 * 109.52249 * 61.74782 * 23 12 11
25 25 H 0.96994 * 120.00710 * 359.97438 * 1 2 3
26 26 H 1.08996 * 109.57372 * 300.15424 * 9 7 2
27 27 H 1.08999 * 109.50370 * 302.38105 * 10 9 7
28 28 H 1.08996 * 109.50366 * 62.50131 * 10 9 7
29 29 H 1.09001 * 109.46017 * 179.19387 * 11 10 9
30 30 H 1.08994 * 109.46513 * 299.16292 * 11 10 9
31 31 H 1.09000 * 109.63464 * 334.64583 * 15 13 12
32 32 H 1.09009 * 109.62714 * 95.03129 * 15 13 12
33 33 H 1.09008 * 108.89391 * 40.75775 * 16 15 13
34 34 H 1.08993 * 108.90121 * 159.24857 * 16 15 13
35 35 H 1.08997 * 108.89405 * 182.68692 * 17 16 15
36 36 H 1.08996 * 108.89264 * 301.18221 * 17 16 15
37 37 H 1.09005 * 109.62784 * 39.73832 * 18 17 16
38 38 H 1.09004 * 109.62464 * 160.30882 * 18 17 16
39 39 H 1.08993 * 108.87926 * 214.92326 * 19 18 17
40 40 H 1.08997 * 108.87647 * 333.47476 * 19 18 17
41 41 H 0.96696 * 113.99698 * 180.02562 * 22 20 13
42 42 H 1.08993 * 109.46274 * 301.72950 * 23 12 11
43 43 H 1.09004 * 109.45871 * 181.76153 * 23 12 11
44 44 H 1.09005 * 109.50344 * 180.87868 * 24 23 12
45 45 H 1.08997 * 109.50532 * 60.75578 * 24 23 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6527 0.7001
6 1 3.5467 1.4403 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 6 2.2452 -3.6638 -0.0005
11 6 1.4754 -4.9851 -0.0621
12 7 0.6546 -5.0186 -1.2793
13 6 0.0084 -6.3278 -1.4426
14 1 -0.7650 -6.4360 -0.6822
15 6 -0.6338 -6.3875 -2.8021
16 6 -1.9339 -7.2101 -2.6940
17 6 -1.6851 -8.6442 -2.6982
18 6 -0.8295 -9.0958 -1.4970
19 6 0.6140 -8.7966 -1.7986
20 6 1.0626 -7.4328 -1.2395
21 1 1.2604 -7.5381 -0.1727
22 8 2.2718 -7.0419 -1.8930
23 6 -0.3392 -3.9375 -1.2795
24 6 0.3764 -2.5850 -1.2544
25 1 -0.4851 0.8399 0.0004
26 1 0.6221 -2.5577 0.8877
27 1 2.9000 -3.5834 -0.8682
28 1 2.8423 -3.6327 0.9108
29 1 2.1807 -5.8160 -0.0767
30 1 0.8311 -5.0711 0.8129
31 1 -0.8662 -5.3782 -3.1420
32 1 0.0468 -6.8638 -3.5079
33 1 -2.4445 -6.9432 -1.7687
34 1 -2.5800 -6.9615 -3.5358
35 1 -2.6404 -9.1682 -2.6681
36 1 -1.1677 -8.9099 -3.6200
37 1 -1.1371 -8.5526 -0.6034
38 1 -0.9562 -10.1670 -1.3394
39 1 1.2351 -9.5784 -1.3616
40 1 0.7558 -8.7968 -2.8793
41 1 2.9883 -7.6862 -1.8125
42 1 -0.9749 -4.0284 -0.3988
43 1 -0.9519 -4.0076 -2.1783
44 1 -0.3617 -1.7830 -1.2387
45 1 1.0018 -2.4876 -2.1417
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397178476.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:50:35
Heat of formation + Delta-G solvation = -61.149871 kcal
Electronic energy + Delta-G solvation = -22123.898276 eV
Core-core repulsion = 19140.376033 eV
Total energy + Delta-G solvation = -2983.522243 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-39.89914 -37.29928 -35.93482 -33.86643 -31.91640 -31.27887 -29.69497 -29.09985
-25.60802 -24.58355 -23.64596 -21.76876 -21.36411 -20.55207 -19.07068 -18.46105
-16.92134 -16.62766 -16.04300 -15.22694 -14.61884 -14.31764 -14.18362 -13.72849
-13.62185 -13.43560 -13.07891 -12.68993 -12.56264 -12.40180 -12.21497 -11.89862
-11.61070 -11.37647 -10.92965 -10.89241 -10.71457 -10.62782 -10.50565 -10.48851
-10.27057 -10.15255 -10.02534 -9.83361 -9.62780 -9.29438 -8.78157 -8.58282
-8.20863 -7.49810 -5.89526 -3.94352 3.36432 3.42637 3.46304 4.23764
4.43032 4.51796 4.61095 4.72635 4.87387 5.07586 5.18768 5.23125
5.34354 5.37782 5.40779 5.62642 5.66706 5.84727 5.92393 5.96413
5.97928 6.02736 6.05848 6.10054 6.17250 6.22282 6.27055 6.36590
6.40842 6.50364 6.55260 6.77138 6.80589 7.01687 7.23370 7.30985
7.56232 7.74320 7.81742 7.91776 7.99624 8.17010 8.26750 8.58177
9.09468 9.69495 11.16644
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.037474 B = 0.004623 C = 0.004295
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 747.008699 B = 6055.235508 C = 6517.224314
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.060 3.940
3 Si 0.889 3.111
4 H -0.281 1.281
5 H -0.288 1.288
6 H -0.275 1.275
7 C -0.508 4.508
8 H 0.054 0.946
9 C 0.048 3.952
10 C -0.104 4.104
11 C 0.061 3.939
12 N -0.516 5.516
13 C 0.098 3.902
14 H 0.038 0.962
15 C -0.111 4.111
16 C -0.122 4.122
17 C -0.115 4.115
18 C -0.116 4.116
19 C -0.150 4.150
20 C 0.113 3.887
21 H 0.044 0.956
22 O -0.538 6.538
23 C 0.053 3.947
24 C -0.102 4.102
25 H 0.258 0.742
26 H 0.018 0.982
27 H 0.057 0.943
28 H 0.045 0.955
29 H 0.067 0.933
30 H 0.012 0.988
31 H 0.078 0.922
32 H 0.070 0.930
33 H 0.058 0.942
34 H 0.059 0.941
35 H 0.055 0.945
36 H 0.059 0.941
37 H 0.065 0.935
38 H 0.061 0.939
39 H 0.058 0.942
40 H 0.073 0.927
41 H 0.363 0.637
42 H 0.017 0.983
43 H 0.058 0.942
44 H 0.090 0.910
45 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.255 -18.416 -3.793 18.937
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.140 4.140
3 Si 0.717 3.283
4 H -0.208 1.208
5 H -0.214 1.214
6 H -0.200 1.200
7 C -0.546 4.546
8 H 0.072 0.928
9 C 0.029 3.971
10 C -0.141 4.141
11 C -0.066 4.066
12 N -0.241 5.241
13 C -0.011 4.011
14 H 0.056 0.944
15 C -0.149 4.149
16 C -0.160 4.160
17 C -0.152 4.152
18 C -0.154 4.154
19 C -0.188 4.188
20 C 0.053 3.947
21 H 0.062 0.938
22 O -0.341 6.341
23 C -0.074 4.074
24 C -0.140 4.140
25 H 0.068 0.932
26 H 0.036 0.964
27 H 0.076 0.924
28 H 0.063 0.937
29 H 0.085 0.915
30 H 0.030 0.970
31 H 0.096 0.904
32 H 0.089 0.911
33 H 0.076 0.924
34 H 0.078 0.922
35 H 0.074 0.926
36 H 0.078 0.922
37 H 0.084 0.916
38 H 0.080 0.920
39 H 0.077 0.923
40 H 0.091 0.909
41 H 0.208 0.792
42 H 0.035 0.965
43 H 0.076 0.924
44 H 0.108 0.892
45 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -2.458 -17.668 -4.329 18.356
hybrid contribution 0.164 0.237 0.913 0.957
sum -2.295 -17.432 -3.416 17.911
Atomic orbital electron populations
1.69881 1.05852 1.26159 1.51390 1.24964 0.94818 0.98927 0.95326
0.86649 0.79878 0.83746 0.78031 1.20755 1.21396 1.20029 1.21237
0.92874 0.90751 1.49724 0.92820 1.18685 0.92745 0.91793 0.93858
1.21637 0.98657 0.93846 1.00002 1.22159 0.95815 0.99662 0.89008
1.61982 1.22953 1.00925 1.38257 1.21417 0.93131 0.89569 0.97004
0.94415 1.21447 0.95455 1.01001 0.96974 1.20524 0.98143 0.95341
1.02001 1.20488 0.99728 0.96724 0.98287 1.21273 0.94732 1.00592
0.98776 1.22113 0.97103 0.97103 1.02504 1.22306 0.85639 0.92109
0.94598 0.93785 1.86841 1.21834 1.47599 1.77838 1.22367 0.93328
0.93302 0.98416 1.21630 1.00085 0.92921 0.99382 0.93208 0.96400
0.92439 0.93661 0.91515 0.96956 0.90391 0.91137 0.92362 0.92220
0.92606 0.92198 0.91625 0.91975 0.92346 0.90869 0.79238 0.96451
0.92376 0.89154 0.93857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.05 11.37 55.43 0.63 -25.42 16
2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16
3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16
4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
7 C -0.51 -14.41 8.56 -34.44 -0.29 -14.71 16
8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16
9 C 0.05 1.24 2.16 -91.64 -0.20 1.04 16
10 C -0.10 -2.32 5.32 -26.65 -0.14 -2.46 16
11 C 0.06 1.18 4.77 -3.83 -0.02 1.16 16
12 N -0.52 -9.73 4.07 -227.54 -0.93 -10.65 16
13 C 0.10 1.47 1.34 -68.42 -0.09 1.38 16
14 H 0.04 0.58 6.59 -51.93 -0.34 0.24 16
15 C -0.11 -1.53 5.09 -27.35 -0.14 -1.67 16
16 C -0.12 -1.36 5.26 -29.60 -0.16 -1.51 16
17 C -0.11 -1.08 5.26 -29.60 -0.16 -1.24 16
18 C -0.12 -1.08 5.61 -27.35 -0.15 -1.23 16
19 C -0.15 -1.48 4.89 -27.44 -0.13 -1.61 16
20 C 0.11 1.44 2.21 -25.62 -0.06 1.38 16
21 H 0.04 0.56 7.23 -51.93 -0.38 0.19 16
22 O -0.54 -7.44 11.41 -35.23 -0.40 -7.84 16
23 C 0.05 1.09 5.23 -3.84 -0.02 1.07 16
24 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16
25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16
26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16
27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16
28 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16
29 H 0.07 1.17 5.29 -51.93 -0.27 0.89 16
30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16
31 H 0.08 1.20 5.69 -51.93 -0.30 0.91 16
32 H 0.07 0.98 6.99 -51.92 -0.36 0.62 16
33 H 0.06 0.67 7.47 -51.92 -0.39 0.28 16
34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
36 H 0.06 0.55 7.47 -51.93 -0.39 0.17 16
37 H 0.07 0.66 6.97 -51.93 -0.36 0.30 16
38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
40 H 0.07 0.75 6.63 -51.93 -0.34 0.41 16
41 H 0.36 3.38 9.04 45.56 0.41 3.79 16
42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16
43 H 0.06 1.10 5.94 -51.93 -0.31 0.80 16
44 H 0.09 2.45 6.18 -51.93 -0.32 2.13 16
45 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16
LS Contribution 322.81 15.07 4.86 4.86
Total: -1.00 -30.22 322.81 -9.76 -39.98
By element:
Atomic # 1 Polarization: 8.84 SS G_CDS: -7.12 Total: 1.72 kcal
Atomic # 6 Polarization: -17.64 SS G_CDS: -1.79 Total: -19.43 kcal
Atomic # 7 Polarization: -35.77 SS G_CDS: -0.30 Total: -36.07 kcal
Atomic # 8 Polarization: -7.44 SS G_CDS: -0.40 Total: -7.84 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -30.22 -9.76 -39.98 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397178476.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.165 kcal
(2) G-P(sol) polarization free energy of solvation -30.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.385 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.150 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds