Wall clock time and date at job start Mon Mar 30 2020 06:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99678 * 2 1 4 4 H 1.48504 * 109.47267 * 269.99913 * 3 2 1 5 5 H 1.48502 * 109.47117 * 30.00379 * 3 2 1 6 6 H 1.48500 * 109.47022 * 150.00314 * 3 2 1 7 7 C 1.37875 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.53125 * 109.52208 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.27554 * 182.44121 * 10 9 7 12 12 N 1.46850 * 109.52271 * 59.18083 * 11 10 9 13 13 C 1.46906 * 110.99551 * 174.15781 * 12 11 10 14 14 H 1.08999 * 108.84819 * 70.48623 * 13 12 11 15 15 C 1.50472 * 108.87330 * 189.03759 * 13 12 11 16 16 C 1.54230 * 108.51757 * 214.93306 * 15 13 12 17 17 C 1.45550 * 112.41229 * 280.00818 * 16 15 13 18 18 C 1.54239 * 112.40115 * 61.93166 * 17 16 15 19 19 C 1.50470 * 108.53117 * 280.02292 * 18 17 16 20 20 C 1.54064 * 108.87972 * 312.01663 * 13 12 11 21 21 H 1.09004 * 108.81181 * 76.64797 * 20 13 12 22 22 O 1.42901 * 108.81368 * 318.37325 * 20 13 12 23 23 C 1.46848 * 111.19588 * 298.25346 * 12 11 10 24 24 C 1.53032 * 109.52249 * 61.74782 * 23 12 11 25 25 H 0.96994 * 120.00710 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.57372 * 300.15424 * 9 7 2 27 27 H 1.08999 * 109.50370 * 302.38105 * 10 9 7 28 28 H 1.08996 * 109.50366 * 62.50131 * 10 9 7 29 29 H 1.09001 * 109.46017 * 179.19387 * 11 10 9 30 30 H 1.08994 * 109.46513 * 299.16292 * 11 10 9 31 31 H 1.09000 * 109.63464 * 334.64583 * 15 13 12 32 32 H 1.09009 * 109.62714 * 95.03129 * 15 13 12 33 33 H 1.09008 * 108.89391 * 40.75775 * 16 15 13 34 34 H 1.08993 * 108.90121 * 159.24857 * 16 15 13 35 35 H 1.08997 * 108.89405 * 182.68692 * 17 16 15 36 36 H 1.08996 * 108.89264 * 301.18221 * 17 16 15 37 37 H 1.09005 * 109.62784 * 39.73832 * 18 17 16 38 38 H 1.09004 * 109.62464 * 160.30882 * 18 17 16 39 39 H 1.08993 * 108.87926 * 214.92326 * 19 18 17 40 40 H 1.08997 * 108.87647 * 333.47476 * 19 18 17 41 41 H 0.96696 * 113.99698 * 180.02562 * 22 20 13 42 42 H 1.08993 * 109.46274 * 301.72950 * 23 12 11 43 43 H 1.09004 * 109.45871 * 181.76153 * 23 12 11 44 44 H 1.09005 * 109.50344 * 180.87868 * 24 23 12 45 45 H 1.08997 * 109.50532 * 60.75578 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6638 -0.0005 11 6 1.4754 -4.9851 -0.0621 12 7 0.6546 -5.0186 -1.2793 13 6 0.0084 -6.3278 -1.4426 14 1 -0.7650 -6.4360 -0.6822 15 6 -0.6338 -6.3875 -2.8021 16 6 -1.9339 -7.2101 -2.6940 17 6 -1.6851 -8.6442 -2.6982 18 6 -0.8295 -9.0958 -1.4970 19 6 0.6140 -8.7966 -1.7986 20 6 1.0626 -7.4328 -1.2395 21 1 1.2604 -7.5381 -0.1727 22 8 2.2718 -7.0419 -1.8930 23 6 -0.3392 -3.9375 -1.2795 24 6 0.3764 -2.5850 -1.2544 25 1 -0.4851 0.8399 0.0004 26 1 0.6221 -2.5577 0.8877 27 1 2.9000 -3.5834 -0.8682 28 1 2.8423 -3.6327 0.9108 29 1 2.1807 -5.8160 -0.0767 30 1 0.8311 -5.0711 0.8129 31 1 -0.8662 -5.3782 -3.1420 32 1 0.0468 -6.8638 -3.5079 33 1 -2.4445 -6.9432 -1.7687 34 1 -2.5800 -6.9615 -3.5358 35 1 -2.6404 -9.1682 -2.6681 36 1 -1.1677 -8.9099 -3.6200 37 1 -1.1371 -8.5526 -0.6034 38 1 -0.9562 -10.1670 -1.3394 39 1 1.2351 -9.5784 -1.3616 40 1 0.7558 -8.7968 -2.8793 41 1 2.9883 -7.6862 -1.8125 42 1 -0.9749 -4.0284 -0.3988 43 1 -0.9519 -4.0076 -2.1783 44 1 -0.3617 -1.7830 -1.2387 45 1 1.0018 -2.4876 -2.1417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397178476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:35 Heat of formation + Delta-G solvation = -80.877976 kcal Electronic energy + Delta-G solvation = -22124.753750 eV Core-core repulsion = 19140.376033 eV Total energy + Delta-G solvation = -2984.377717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07717 -38.78082 -36.90137 -35.63403 -33.55028 -32.40339 -31.42525 -30.51449 -27.44513 -25.67851 -24.94778 -23.37974 -23.02890 -21.45369 -20.36955 -20.11000 -18.48951 -17.95974 -17.53513 -16.54157 -16.27947 -15.62404 -15.25864 -15.12654 -15.02760 -14.63722 -14.39831 -14.26861 -13.98924 -13.95242 -13.59018 -13.09225 -13.01335 -12.88914 -12.69463 -12.49249 -12.23951 -12.09023 -11.91482 -11.79131 -11.54683 -11.45254 -11.37392 -11.21654 -11.11760 -10.70617 -10.62201 -10.52251 -10.35291 -9.03190 -8.07485 -6.21222 1.40712 1.41503 1.51868 2.44087 2.95961 3.18917 3.46133 3.69153 3.83984 4.02322 4.12437 4.21393 4.26428 4.32695 4.36306 4.38591 4.43858 4.49869 4.60468 4.71789 4.76479 4.84693 4.89846 4.96568 5.03057 5.07169 5.10982 5.15918 5.21029 5.27513 5.30340 5.33912 5.36945 5.44195 5.54077 5.55134 5.58849 5.63619 6.01126 6.05379 6.36293 6.41729 6.45874 6.89919 7.08452 7.46329 8.97232 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.004623 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.008699 B = 6055.235508 C = 6517.224314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.096 4.096 11 C 0.070 3.930 12 N -0.524 5.524 13 C 0.094 3.906 14 H 0.036 0.964 15 C -0.107 4.107 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.115 3.885 21 H 0.045 0.955 22 O -0.563 6.563 23 C 0.065 3.935 24 C -0.092 4.092 25 H 0.260 0.740 26 H -0.015 1.015 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.008 0.992 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.383 0.617 42 H 0.008 0.992 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 -20.368 -4.216 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.027 3.973 10 C -0.134 4.134 11 C -0.058 4.058 12 N -0.249 5.249 13 C -0.014 4.014 14 H 0.054 0.946 15 C -0.145 4.145 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.178 4.178 20 C 0.055 3.945 21 H 0.063 0.937 22 O -0.369 6.369 23 C -0.062 4.062 24 C -0.130 4.130 25 H 0.069 0.931 26 H 0.004 0.996 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.231 0.769 42 H 0.026 0.974 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.089 -19.649 -4.752 20.323 hybrid contribution 0.055 0.845 1.044 1.344 sum -2.035 -18.805 -3.709 19.275 Atomic orbital electron populations 1.70020 1.07184 1.27055 1.51579 1.25755 0.95702 1.02381 0.94781 0.85609 0.78742 0.79380 0.78238 1.20144 1.20749 1.19328 1.21586 0.92945 0.92305 1.50365 0.93225 1.18653 0.93134 0.92696 0.92864 1.21501 0.97939 0.94264 0.99684 1.22060 0.96015 0.98511 0.89188 1.61940 1.22793 1.02347 1.37832 1.21606 0.93961 0.88196 0.97643 0.94576 1.21396 0.96759 1.00313 0.96027 1.20479 0.96570 0.96251 1.02040 1.20483 1.00721 0.95353 0.98673 1.21305 0.94172 1.01761 0.98179 1.22024 0.97854 0.95606 1.02341 1.22282 0.84820 0.92512 0.94844 0.93678 1.86773 1.22846 1.49229 1.78032 1.22116 0.93265 0.92072 0.98795 1.21387 0.99044 0.94628 0.97980 0.93077 0.99641 0.93439 0.93257 0.89008 0.97372 0.92543 0.91140 0.92966 0.91455 0.91105 0.91666 0.92565 0.89942 0.90159 0.90982 0.76911 0.97367 0.90779 0.92097 0.95441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.99 11.37 21.45 0.24 -54.75 16 2 C 0.01 0.69 5.31 84.65 0.45 1.14 16 3 Si 0.95 45.22 29.54 68.60 2.03 47.25 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.53 -31.15 8.56 25.60 0.22 -30.93 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.05 2.43 2.16 -11.46 -0.02 2.40 16 10 C -0.10 -4.36 5.32 30.65 0.16 -4.20 16 11 C 0.07 2.67 4.77 86.33 0.41 3.08 16 12 N -0.52 -19.64 4.07 -873.81 -3.56 -23.20 16 13 C 0.09 2.73 1.34 44.46 0.06 2.79 16 14 H 0.04 1.08 6.59 -2.39 -0.02 1.06 16 15 C -0.11 -2.83 5.09 30.19 0.15 -2.68 16 16 C -0.12 -2.35 5.26 28.74 0.15 -2.20 16 17 C -0.11 -1.83 5.26 28.74 0.15 -1.68 16 18 C -0.12 -1.79 5.61 30.20 0.17 -1.62 16 19 C -0.14 -2.30 4.89 30.14 0.15 -2.15 16 20 C 0.11 2.66 2.21 31.32 0.07 2.73 16 21 H 0.05 1.04 7.23 -2.38 -0.02 1.02 16 22 O -0.56 -14.30 11.41 -148.98 -1.70 -16.00 16 23 C 0.07 2.74 5.23 86.32 0.45 3.19 16 24 C -0.09 -4.72 5.12 30.65 0.16 -4.56 16 25 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 26 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 27 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.09 3.07 5.29 -2.39 -0.01 3.05 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 1.72 5.69 -2.39 -0.01 1.71 16 32 H 0.07 1.85 6.99 -2.38 -0.02 1.84 16 33 H 0.05 1.13 7.47 -2.38 -0.02 1.11 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.00 7.47 -2.39 -0.02 0.98 16 37 H 0.06 0.99 6.97 -2.38 -0.02 0.97 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.24 6.63 -2.39 -0.02 1.22 16 41 H 0.38 6.09 9.04 -74.06 -0.67 5.42 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.07 2.86 5.94 -2.38 -0.01 2.85 16 44 H 0.06 3.46 6.18 -2.38 -0.01 3.45 16 45 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -66.28 322.81 0.03 -66.25 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.29 Total: 15.13 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 2.73 Total: -34.68 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -3.32 Total: -77.95 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -1.70 Total: -16.00 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.28 0.03 -66.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397178476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.631 kcal (2) G-P(sol) polarization free energy of solvation -66.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds