Wall clock time and date at job start Mon Mar 30 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.53127 * 109.52198 * 299.68395 * 9 7 2 11 11 C 1.53038 * 109.27671 * 182.44126 * 10 9 7 12 12 N 1.46842 * 109.52658 * 59.17784 * 11 10 9 13 13 C 1.46898 * 111.00315 * 174.15772 * 12 11 10 14 14 H 1.08997 * 108.85670 * 185.65221 * 13 12 11 15 15 C 1.54069 * 108.87379 * 67.18575 * 13 12 11 16 16 C 1.54071 * 112.81619 * 197.50579 * 15 13 12 17 17 C 1.50469 * 112.49928 * 318.28746 * 16 15 13 18 18 C 1.54240 * 108.53010 * 94.14609 * 17 16 15 19 19 C 1.45545 * 112.39848 * 280.02239 * 18 17 16 20 20 C 1.50474 * 108.87781 * 304.21309 * 13 12 11 21 21 H 1.09002 * 109.62792 * 95.02396 * 20 13 12 22 22 O 1.42896 * 109.62796 * 334.63770 * 20 13 12 23 23 C 1.46847 * 111.20141 * 298.26127 * 12 11 10 24 24 C 1.53037 * 109.52490 * 61.73569 * 23 12 11 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.52058 * 59.87277 * 9 7 2 27 27 H 1.09002 * 109.50184 * 302.38034 * 10 9 7 28 28 H 1.08996 * 109.50420 * 62.49822 * 10 9 7 29 29 H 1.09001 * 109.46031 * 299.16288 * 11 10 9 30 30 H 1.09001 * 109.45823 * 179.19644 * 11 10 9 31 31 H 1.08999 * 108.81591 * 318.37515 * 15 13 12 32 32 H 1.08998 * 108.80922 * 76.64739 * 15 13 12 33 33 H 1.08999 * 108.87477 * 197.50867 * 16 15 13 34 34 H 1.08998 * 108.87344 * 79.06647 * 16 15 13 35 35 H 1.09003 * 109.63043 * 334.42916 * 17 16 15 36 36 H 1.09002 * 109.78337 * 213.95249 * 17 16 15 37 37 H 1.08999 * 108.90020 * 159.26594 * 18 17 16 38 38 H 1.09000 * 108.89755 * 40.77361 * 18 17 16 39 39 H 1.09000 * 108.89591 * 301.17730 * 19 18 17 40 40 H 1.09003 * 108.81184 * 182.64147 * 19 18 17 41 41 H 0.96707 * 113.99892 * 179.97438 * 22 20 13 42 42 H 1.09004 * 109.45763 * 301.72833 * 23 12 11 43 43 H 1.08999 * 109.45931 * 181.75172 * 23 12 11 44 44 H 1.08999 * 109.50528 * 180.88639 * 24 23 12 45 45 H 1.08998 * 109.53139 * 60.78511 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 0.3766 -2.5852 1.2536 11 6 -0.3391 -3.9377 1.2788 12 7 0.6545 -5.0189 1.2779 13 6 0.0084 -6.3280 1.4412 14 1 0.7797 -7.0921 1.5368 15 6 -0.8347 -6.6276 0.1869 16 6 -1.8751 -7.7401 0.4181 17 6 -1.3236 -8.8863 1.2219 18 6 -1.6657 -8.6526 2.7076 19 6 -0.7581 -7.7095 3.3440 20 6 -0.8174 -6.3098 2.6990 21 1 -1.8498 -6.0589 2.4556 22 8 -0.2889 -5.3404 3.6062 23 6 1.4749 -4.9852 0.0604 24 6 2.2448 -3.6640 -0.0011 25 1 -0.4850 0.8401 0.0004 26 1 0.6219 -2.5566 -0.8889 27 1 1.0023 -2.4881 2.1408 28 1 -0.3614 -1.7832 1.2385 29 1 -0.9752 -4.0284 0.3983 30 1 -0.9514 -4.0078 2.1778 31 1 -1.3539 -5.7175 -0.1134 32 1 -0.1681 -6.9318 -0.6201 33 1 -2.2100 -8.1162 -0.5486 34 1 -2.7306 -7.3187 0.9459 35 1 -0.2416 -8.9331 1.0983 36 1 -1.7711 -9.8217 0.8858 37 1 -1.6131 -9.6045 3.2360 38 1 -2.6827 -8.2670 2.7792 39 1 0.2598 -8.0914 3.2657 40 1 -1.0224 -7.6239 4.3980 41 1 -0.7749 -5.2757 4.4397 42 1 0.8303 -5.0709 -0.8143 43 1 2.1802 -5.8161 0.0747 44 1 2.8415 -3.6326 -0.9127 45 1 2.9003 -3.5834 0.8660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397178477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:38 Heat of formation + Delta-G solvation = -59.922767 kcal Electronic energy + Delta-G solvation = -22245.579008 eV Core-core repulsion = 19262.109977 eV Total energy + Delta-G solvation = -2983.469031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.01728 -37.30164 -35.70875 -33.96177 -31.96674 -31.17532 -29.62852 -28.92689 -25.67391 -24.61854 -23.45427 -22.08916 -21.53988 -20.46280 -19.27547 -17.89906 -17.29619 -16.28204 -15.75460 -14.98140 -14.60729 -14.45210 -14.34302 -14.01622 -13.78355 -13.19134 -13.11761 -12.90225 -12.53105 -12.28476 -12.12013 -11.75615 -11.51314 -11.24287 -11.03610 -10.90376 -10.80851 -10.67161 -10.58073 -10.51778 -10.36272 -10.15196 -9.98501 -9.78951 -9.51305 -9.22885 -8.82096 -8.53446 -8.17881 -7.41770 -5.87700 -3.92461 3.38763 3.42645 3.46027 4.25129 4.48160 4.52984 4.54532 4.87445 4.90493 5.09736 5.16824 5.17614 5.26382 5.37438 5.42448 5.58021 5.68675 5.84364 5.89170 5.93868 5.98017 6.02080 6.06299 6.09717 6.14360 6.18547 6.23194 6.32078 6.37052 6.52404 6.57299 6.79323 6.86893 7.01108 7.22285 7.36416 7.61941 7.78186 7.83627 7.99006 8.06134 8.20994 8.30898 8.60294 9.11029 9.71029 11.18364 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037343 B = 0.004685 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.633733 B = 5975.214557 C = 6165.830761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.289 1.289 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.509 4.509 8 H 0.052 0.948 9 C 0.048 3.952 10 C -0.100 4.100 11 C 0.058 3.942 12 N -0.509 5.509 13 C 0.092 3.908 14 H 0.074 0.926 15 C -0.153 4.153 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.148 4.148 20 C 0.118 3.882 21 H 0.050 0.950 22 O -0.531 6.531 23 C 0.056 3.944 24 C -0.105 4.105 25 H 0.258 0.742 26 H 0.017 0.983 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.013 0.987 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.362 0.638 42 H 0.023 0.977 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.127 -17.055 4.694 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.138 4.138 11 C -0.069 4.069 12 N -0.232 5.232 13 C -0.017 4.017 14 H 0.092 0.908 15 C -0.192 4.192 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.186 4.186 20 C 0.059 3.941 21 H 0.068 0.932 22 O -0.334 6.334 23 C -0.072 4.072 24 C -0.143 4.143 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.031 0.969 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.207 0.793 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.517 -16.742 4.600 17.941 hybrid contribution -0.518 0.613 -0.333 0.869 sum -5.035 -16.130 4.267 17.428 Atomic orbital electron populations 1.69884 1.05841 1.26209 1.51292 1.24956 0.94814 0.98882 0.95336 0.86714 0.79627 0.83443 0.78518 1.21431 1.20332 1.20457 1.21199 0.92804 0.90813 1.49878 0.92932 1.18679 0.92723 0.91588 0.94051 1.21591 0.99985 0.93194 0.99065 1.22341 0.93327 0.92734 0.98503 1.62246 1.23071 1.01004 1.36863 1.21555 0.94936 0.93455 0.91749 0.90785 1.22660 0.98410 0.99007 0.99132 1.21308 0.98509 0.95621 0.99992 1.21371 1.01634 0.97956 0.94716 1.20439 0.99675 0.99145 0.96067 1.21192 1.01079 0.96483 0.99857 1.21420 0.96077 0.86846 0.89793 0.93214 1.86913 1.58094 1.58885 1.29474 1.22151 0.95814 0.98958 0.90270 1.21660 0.98714 0.93947 1.00000 0.93190 0.96451 0.93860 0.89421 0.96918 0.91264 0.91305 0.91844 0.92453 0.92247 0.91490 0.92073 0.92307 0.92240 0.91405 0.91960 0.79308 0.95900 0.92946 0.93552 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 11.37 55.43 0.63 -25.50 16 2 C 0.06 1.73 5.31 -17.82 -0.09 1.63 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.50 8.56 -34.44 -0.29 -14.79 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.25 2.16 -91.65 -0.20 1.05 16 10 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 11 C 0.06 1.20 4.54 -3.84 -0.02 1.18 16 12 N -0.51 -9.56 4.06 -227.54 -0.92 -10.49 16 13 C 0.09 1.38 1.73 -68.42 -0.12 1.26 16 14 H 0.07 1.09 6.63 -51.93 -0.34 0.75 16 15 C -0.15 -2.07 4.14 -25.61 -0.11 -2.17 16 16 C -0.12 -1.24 5.31 -27.44 -0.15 -1.38 16 17 C -0.12 -1.11 5.61 -27.35 -0.15 -1.27 16 18 C -0.12 -1.03 5.26 -29.60 -0.16 -1.19 16 19 C -0.15 -1.52 4.93 -29.60 -0.15 -1.66 16 20 C 0.12 1.54 2.01 -27.35 -0.05 1.49 16 21 H 0.05 0.65 6.94 -51.93 -0.36 0.29 16 22 O -0.53 -7.88 10.52 -35.23 -0.37 -8.25 16 23 C 0.06 1.07 4.84 -3.83 -0.02 1.05 16 24 C -0.11 -2.35 5.32 -26.65 -0.14 -2.49 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 29 H 0.01 0.27 6.40 -51.93 -0.33 -0.06 16 30 H 0.07 1.36 5.53 -51.93 -0.29 1.08 16 31 H 0.07 1.07 6.02 -51.93 -0.31 0.76 16 32 H 0.06 0.86 7.43 -51.93 -0.39 0.47 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.63 6.64 -51.93 -0.34 0.28 16 35 H 0.07 0.67 6.97 -51.93 -0.36 0.30 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.52 7.47 -51.93 -0.39 0.13 16 39 H 0.07 0.75 7.47 -51.93 -0.39 0.36 16 40 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 41 H 0.36 3.74 9.05 45.56 0.41 4.16 16 42 H 0.02 0.44 6.92 -51.93 -0.36 0.08 16 43 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -30.37 320.55 -9.75 -40.12 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.11 Total: 2.36 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -1.78 Total: -19.92 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.29 Total: -35.99 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.37 Total: -8.25 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.37 -9.75 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397178477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.805 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds