Wall clock time and date at job start Mon Mar 30 2020 06:50:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86798 * 120.00042 * 2 1
4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1
5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1
6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1
7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3
8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1
9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1
10 10 C 1.53127 * 109.52198 * 299.68395 * 9 7 2
11 11 C 1.53038 * 109.27671 * 182.44126 * 10 9 7
12 12 N 1.46842 * 109.52658 * 59.17784 * 11 10 9
13 13 C 1.46898 * 111.00315 * 174.15772 * 12 11 10
14 14 H 1.08997 * 108.85670 * 185.65221 * 13 12 11
15 15 C 1.54069 * 108.87379 * 67.18575 * 13 12 11
16 16 C 1.54071 * 112.81619 * 197.50579 * 15 13 12
17 17 C 1.50469 * 112.49928 * 318.28746 * 16 15 13
18 18 C 1.54240 * 108.53010 * 94.14609 * 17 16 15
19 19 C 1.45545 * 112.39848 * 280.02239 * 18 17 16
20 20 C 1.50474 * 108.87781 * 304.21309 * 13 12 11
21 21 H 1.09002 * 109.62792 * 95.02396 * 20 13 12
22 22 O 1.42896 * 109.62796 * 334.63770 * 20 13 12
23 23 C 1.46847 * 111.20141 * 298.26127 * 12 11 10
24 24 C 1.53037 * 109.52490 * 61.73569 * 23 12 11
25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3
26 26 H 1.09000 * 109.52058 * 59.87277 * 9 7 2
27 27 H 1.09002 * 109.50184 * 302.38034 * 10 9 7
28 28 H 1.08996 * 109.50420 * 62.49822 * 10 9 7
29 29 H 1.09001 * 109.46031 * 299.16288 * 11 10 9
30 30 H 1.09001 * 109.45823 * 179.19644 * 11 10 9
31 31 H 1.08999 * 108.81591 * 318.37515 * 15 13 12
32 32 H 1.08998 * 108.80922 * 76.64739 * 15 13 12
33 33 H 1.08999 * 108.87477 * 197.50867 * 16 15 13
34 34 H 1.08998 * 108.87344 * 79.06647 * 16 15 13
35 35 H 1.09003 * 109.63043 * 334.42916 * 17 16 15
36 36 H 1.09002 * 109.78337 * 213.95249 * 17 16 15
37 37 H 1.08999 * 108.90020 * 159.26594 * 18 17 16
38 38 H 1.09000 * 108.89755 * 40.77361 * 18 17 16
39 39 H 1.09000 * 108.89591 * 301.17730 * 19 18 17
40 40 H 1.09003 * 108.81184 * 182.64147 * 19 18 17
41 41 H 0.96707 * 113.99892 * 179.97438 * 22 20 13
42 42 H 1.09004 * 109.45763 * 301.72833 * 23 12 11
43 43 H 1.08999 * 109.45931 * 181.75172 * 23 12 11
44 44 H 1.08999 * 109.50528 * 180.88639 * 24 23 12
45 45 H 1.08998 * 109.53139 * 60.78511 * 24 23 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 1.2843 2.7464 -0.0006
5 1 3.1029 1.6964 1.2124
6 1 3.1029 1.6962 -1.2126
7 6 2.0044 -1.1941 -0.0005
8 1 3.0844 -1.1941 -0.0001
9 6 1.2509 -2.4992 -0.0005
10 6 0.3766 -2.5852 1.2536
11 6 -0.3391 -3.9377 1.2788
12 7 0.6545 -5.0189 1.2779
13 6 0.0084 -6.3280 1.4412
14 1 0.7797 -7.0921 1.5368
15 6 -0.8347 -6.6276 0.1869
16 6 -1.8751 -7.7401 0.4181
17 6 -1.3236 -8.8863 1.2219
18 6 -1.6657 -8.6526 2.7076
19 6 -0.7581 -7.7095 3.3440
20 6 -0.8174 -6.3098 2.6990
21 1 -1.8498 -6.0589 2.4556
22 8 -0.2889 -5.3404 3.6062
23 6 1.4749 -4.9852 0.0604
24 6 2.2448 -3.6640 -0.0011
25 1 -0.4850 0.8401 0.0004
26 1 0.6219 -2.5566 -0.8889
27 1 1.0023 -2.4881 2.1408
28 1 -0.3614 -1.7832 1.2385
29 1 -0.9752 -4.0284 0.3983
30 1 -0.9514 -4.0078 2.1778
31 1 -1.3539 -5.7175 -0.1134
32 1 -0.1681 -6.9318 -0.6201
33 1 -2.2100 -8.1162 -0.5486
34 1 -2.7306 -7.3187 0.9459
35 1 -0.2416 -8.9331 1.0983
36 1 -1.7711 -9.8217 0.8858
37 1 -1.6131 -9.6045 3.2360
38 1 -2.6827 -8.2670 2.7792
39 1 0.2598 -8.0914 3.2657
40 1 -1.0224 -7.6239 4.3980
41 1 -0.7749 -5.2757 4.4397
42 1 0.8303 -5.0709 -0.8143
43 1 2.1802 -5.8161 0.0747
44 1 2.8415 -3.6326 -0.9127
45 1 2.9003 -3.5834 0.8660
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397178477.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:50:38
Heat of formation + Delta-G solvation = -59.922767 kcal
Electronic energy + Delta-G solvation = -22245.579008 eV
Core-core repulsion = 19262.109977 eV
Total energy + Delta-G solvation = -2983.469031 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.01728 -37.30164 -35.70875 -33.96177 -31.96674 -31.17532 -29.62852 -28.92689
-25.67391 -24.61854 -23.45427 -22.08916 -21.53988 -20.46280 -19.27547 -17.89906
-17.29619 -16.28204 -15.75460 -14.98140 -14.60729 -14.45210 -14.34302 -14.01622
-13.78355 -13.19134 -13.11761 -12.90225 -12.53105 -12.28476 -12.12013 -11.75615
-11.51314 -11.24287 -11.03610 -10.90376 -10.80851 -10.67161 -10.58073 -10.51778
-10.36272 -10.15196 -9.98501 -9.78951 -9.51305 -9.22885 -8.82096 -8.53446
-8.17881 -7.41770 -5.87700 -3.92461 3.38763 3.42645 3.46027 4.25129
4.48160 4.52984 4.54532 4.87445 4.90493 5.09736 5.16824 5.17614
5.26382 5.37438 5.42448 5.58021 5.68675 5.84364 5.89170 5.93868
5.98017 6.02080 6.06299 6.09717 6.14360 6.18547 6.23194 6.32078
6.37052 6.52404 6.57299 6.79323 6.86893 7.01108 7.22285 7.36416
7.61941 7.78186 7.83627 7.99006 8.06134 8.20994 8.30898 8.60294
9.11029 9.71029 11.18364
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.037343 B = 0.004685 C = 0.004540
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 749.633733 B = 5975.214557 C = 6165.830761
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.061 3.939
3 Si 0.889 3.111
4 H -0.289 1.289
5 H -0.278 1.278
6 H -0.279 1.279
7 C -0.509 4.509
8 H 0.052 0.948
9 C 0.048 3.952
10 C -0.100 4.100
11 C 0.058 3.942
12 N -0.509 5.509
13 C 0.092 3.908
14 H 0.074 0.926
15 C -0.153 4.153
16 C -0.116 4.116
17 C -0.119 4.119
18 C -0.116 4.116
19 C -0.148 4.148
20 C 0.118 3.882
21 H 0.050 0.950
22 O -0.531 6.531
23 C 0.056 3.944
24 C -0.105 4.105
25 H 0.258 0.742
26 H 0.017 0.983
27 H 0.043 0.957
28 H 0.088 0.912
29 H 0.013 0.987
30 H 0.069 0.931
31 H 0.068 0.932
32 H 0.063 0.937
33 H 0.057 0.943
34 H 0.059 0.941
35 H 0.066 0.934
36 H 0.061 0.939
37 H 0.058 0.942
38 H 0.059 0.941
39 H 0.067 0.933
40 H 0.062 0.938
41 H 0.362 0.638
42 H 0.023 0.977
43 H 0.052 0.948
44 H 0.046 0.954
45 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.127 -17.055 4.694 18.418
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.140 4.140
3 Si 0.717 3.283
4 H -0.214 1.214
5 H -0.203 1.203
6 H -0.205 1.205
7 C -0.547 4.547
8 H 0.071 0.929
9 C 0.030 3.970
10 C -0.138 4.138
11 C -0.069 4.069
12 N -0.232 5.232
13 C -0.017 4.017
14 H 0.092 0.908
15 C -0.192 4.192
16 C -0.154 4.154
17 C -0.157 4.157
18 C -0.153 4.153
19 C -0.186 4.186
20 C 0.059 3.941
21 H 0.068 0.932
22 O -0.334 6.334
23 C -0.072 4.072
24 C -0.143 4.143
25 H 0.068 0.932
26 H 0.035 0.965
27 H 0.061 0.939
28 H 0.106 0.894
29 H 0.031 0.969
30 H 0.087 0.913
31 H 0.087 0.913
32 H 0.082 0.918
33 H 0.075 0.925
34 H 0.078 0.922
35 H 0.085 0.915
36 H 0.079 0.921
37 H 0.077 0.923
38 H 0.078 0.922
39 H 0.086 0.914
40 H 0.080 0.920
41 H 0.207 0.793
42 H 0.041 0.959
43 H 0.071 0.929
44 H 0.064 0.936
45 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -4.517 -16.742 4.600 17.941
hybrid contribution -0.518 0.613 -0.333 0.869
sum -5.035 -16.130 4.267 17.428
Atomic orbital electron populations
1.69884 1.05841 1.26209 1.51292 1.24956 0.94814 0.98882 0.95336
0.86714 0.79627 0.83443 0.78518 1.21431 1.20332 1.20457 1.21199
0.92804 0.90813 1.49878 0.92932 1.18679 0.92723 0.91588 0.94051
1.21591 0.99985 0.93194 0.99065 1.22341 0.93327 0.92734 0.98503
1.62246 1.23071 1.01004 1.36863 1.21555 0.94936 0.93455 0.91749
0.90785 1.22660 0.98410 0.99007 0.99132 1.21308 0.98509 0.95621
0.99992 1.21371 1.01634 0.97956 0.94716 1.20439 0.99675 0.99145
0.96067 1.21192 1.01079 0.96483 0.99857 1.21420 0.96077 0.86846
0.89793 0.93214 1.86913 1.58094 1.58885 1.29474 1.22151 0.95814
0.98958 0.90270 1.21660 0.98714 0.93947 1.00000 0.93190 0.96451
0.93860 0.89421 0.96918 0.91264 0.91305 0.91844 0.92453 0.92247
0.91490 0.92073 0.92307 0.92240 0.91405 0.91960 0.79308 0.95900
0.92946 0.93552 0.92578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.13 11.37 55.43 0.63 -25.50 16
2 C 0.06 1.73 5.31 -17.82 -0.09 1.63 16
3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16
4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
7 C -0.51 -14.50 8.56 -34.44 -0.29 -14.79 16
8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16
9 C 0.05 1.25 2.16 -91.65 -0.20 1.05 16
10 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16
11 C 0.06 1.20 4.54 -3.84 -0.02 1.18 16
12 N -0.51 -9.56 4.06 -227.54 -0.92 -10.49 16
13 C 0.09 1.38 1.73 -68.42 -0.12 1.26 16
14 H 0.07 1.09 6.63 -51.93 -0.34 0.75 16
15 C -0.15 -2.07 4.14 -25.61 -0.11 -2.17 16
16 C -0.12 -1.24 5.31 -27.44 -0.15 -1.38 16
17 C -0.12 -1.11 5.61 -27.35 -0.15 -1.27 16
18 C -0.12 -1.03 5.26 -29.60 -0.16 -1.19 16
19 C -0.15 -1.52 4.93 -29.60 -0.15 -1.66 16
20 C 0.12 1.54 2.01 -27.35 -0.05 1.49 16
21 H 0.05 0.65 6.94 -51.93 -0.36 0.29 16
22 O -0.53 -7.88 10.52 -35.23 -0.37 -8.25 16
23 C 0.06 1.07 4.84 -3.83 -0.02 1.05 16
24 C -0.11 -2.35 5.32 -26.65 -0.14 -2.49 16
25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16
26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
27 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16
28 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16
29 H 0.01 0.27 6.40 -51.93 -0.33 -0.06 16
30 H 0.07 1.36 5.53 -51.93 -0.29 1.08 16
31 H 0.07 1.07 6.02 -51.93 -0.31 0.76 16
32 H 0.06 0.86 7.43 -51.93 -0.39 0.47 16
33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
34 H 0.06 0.63 6.64 -51.93 -0.34 0.28 16
35 H 0.07 0.67 6.97 -51.93 -0.36 0.30 16
36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
38 H 0.06 0.52 7.47 -51.93 -0.39 0.13 16
39 H 0.07 0.75 7.47 -51.93 -0.39 0.36 16
40 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16
41 H 0.36 3.74 9.05 45.56 0.41 4.16 16
42 H 0.02 0.44 6.92 -51.93 -0.36 0.08 16
43 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16
44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
45 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16
LS Contribution 320.55 15.07 4.83 4.83
Total: -1.00 -30.37 320.55 -9.75 -40.12
By element:
Atomic # 1 Polarization: 9.47 SS G_CDS: -7.11 Total: 2.36 kcal
Atomic # 6 Polarization: -18.14 SS G_CDS: -1.78 Total: -19.92 kcal
Atomic # 7 Polarization: -35.69 SS G_CDS: -0.29 Total: -35.99 kcal
Atomic # 8 Polarization: -7.88 SS G_CDS: -0.37 Total: -8.25 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -30.37 -9.75 -40.12 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397178477.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.805 kcal
(2) G-P(sol) polarization free energy of solvation -30.367 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.172 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.923 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds