Wall clock time and date at job start Mon Mar 30 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.53127 * 109.52198 * 299.68395 * 9 7 2 11 11 C 1.53038 * 109.27671 * 182.44126 * 10 9 7 12 12 N 1.46842 * 109.52658 * 59.17784 * 11 10 9 13 13 C 1.46898 * 111.00315 * 174.15772 * 12 11 10 14 14 H 1.08997 * 108.85670 * 185.65221 * 13 12 11 15 15 C 1.54069 * 108.87379 * 67.18575 * 13 12 11 16 16 C 1.54071 * 112.81619 * 197.50579 * 15 13 12 17 17 C 1.50469 * 112.49928 * 318.28746 * 16 15 13 18 18 C 1.54240 * 108.53010 * 94.14609 * 17 16 15 19 19 C 1.45545 * 112.39848 * 280.02239 * 18 17 16 20 20 C 1.50474 * 108.87781 * 304.21309 * 13 12 11 21 21 H 1.09002 * 109.62792 * 95.02396 * 20 13 12 22 22 O 1.42896 * 109.62796 * 334.63770 * 20 13 12 23 23 C 1.46847 * 111.20141 * 298.26127 * 12 11 10 24 24 C 1.53037 * 109.52490 * 61.73569 * 23 12 11 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.52058 * 59.87277 * 9 7 2 27 27 H 1.09002 * 109.50184 * 302.38034 * 10 9 7 28 28 H 1.08996 * 109.50420 * 62.49822 * 10 9 7 29 29 H 1.09001 * 109.46031 * 299.16288 * 11 10 9 30 30 H 1.09001 * 109.45823 * 179.19644 * 11 10 9 31 31 H 1.08999 * 108.81591 * 318.37515 * 15 13 12 32 32 H 1.08998 * 108.80922 * 76.64739 * 15 13 12 33 33 H 1.08999 * 108.87477 * 197.50867 * 16 15 13 34 34 H 1.08998 * 108.87344 * 79.06647 * 16 15 13 35 35 H 1.09003 * 109.63043 * 334.42916 * 17 16 15 36 36 H 1.09002 * 109.78337 * 213.95249 * 17 16 15 37 37 H 1.08999 * 108.90020 * 159.26594 * 18 17 16 38 38 H 1.09000 * 108.89755 * 40.77361 * 18 17 16 39 39 H 1.09000 * 108.89591 * 301.17730 * 19 18 17 40 40 H 1.09003 * 108.81184 * 182.64147 * 19 18 17 41 41 H 0.96707 * 113.99892 * 179.97438 * 22 20 13 42 42 H 1.09004 * 109.45763 * 301.72833 * 23 12 11 43 43 H 1.08999 * 109.45931 * 181.75172 * 23 12 11 44 44 H 1.08999 * 109.50528 * 180.88639 * 24 23 12 45 45 H 1.08998 * 109.53139 * 60.78511 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 0.3766 -2.5852 1.2536 11 6 -0.3391 -3.9377 1.2788 12 7 0.6545 -5.0189 1.2779 13 6 0.0084 -6.3280 1.4412 14 1 0.7797 -7.0921 1.5368 15 6 -0.8347 -6.6276 0.1869 16 6 -1.8751 -7.7401 0.4181 17 6 -1.3236 -8.8863 1.2219 18 6 -1.6657 -8.6526 2.7076 19 6 -0.7581 -7.7095 3.3440 20 6 -0.8174 -6.3098 2.6990 21 1 -1.8498 -6.0589 2.4556 22 8 -0.2889 -5.3404 3.6062 23 6 1.4749 -4.9852 0.0604 24 6 2.2448 -3.6640 -0.0011 25 1 -0.4850 0.8401 0.0004 26 1 0.6219 -2.5566 -0.8889 27 1 1.0023 -2.4881 2.1408 28 1 -0.3614 -1.7832 1.2385 29 1 -0.9752 -4.0284 0.3983 30 1 -0.9514 -4.0078 2.1778 31 1 -1.3539 -5.7175 -0.1134 32 1 -0.1681 -6.9318 -0.6201 33 1 -2.2100 -8.1162 -0.5486 34 1 -2.7306 -7.3187 0.9459 35 1 -0.2416 -8.9331 1.0983 36 1 -1.7711 -9.8217 0.8858 37 1 -1.6131 -9.6045 3.2360 38 1 -2.6827 -8.2670 2.7792 39 1 0.2598 -8.0914 3.2657 40 1 -1.0224 -7.6239 4.3980 41 1 -0.7749 -5.2757 4.4397 42 1 0.8303 -5.0709 -0.8143 43 1 2.1802 -5.8161 0.0747 44 1 2.8415 -3.6326 -0.9127 45 1 2.9003 -3.5834 0.8660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397178477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:37 Heat of formation + Delta-G solvation = -79.769337 kcal Electronic energy + Delta-G solvation = -22246.439620 eV Core-core repulsion = 19262.109977 eV Total energy + Delta-G solvation = -2984.329643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20442 -38.76112 -36.70972 -35.70494 -33.59457 -32.35958 -31.41040 -30.32149 -27.44702 -25.74530 -24.74442 -23.72006 -23.14187 -21.36997 -20.78739 -19.40945 -18.46652 -18.31437 -17.02520 -16.55960 -16.06631 -15.67960 -15.39860 -15.21969 -15.04219 -14.74485 -14.36915 -14.27580 -14.18918 -13.86260 -13.51126 -13.10046 -12.91991 -12.75927 -12.59603 -12.43643 -12.41047 -12.11798 -11.95698 -11.80870 -11.59952 -11.49538 -11.33143 -11.19579 -11.09814 -10.77742 -10.63675 -10.47937 -10.29448 -8.92480 -8.06467 -6.20213 1.40728 1.42951 1.50412 2.44525 3.02120 3.19729 3.45345 3.72217 3.85892 4.08130 4.11097 4.15390 4.23669 4.29660 4.36863 4.39969 4.44307 4.54263 4.61627 4.68311 4.75582 4.85382 4.97974 4.99348 5.02697 5.07857 5.12219 5.18325 5.24811 5.27001 5.28900 5.32501 5.35730 5.39112 5.46487 5.54670 5.60939 5.67552 6.03114 6.07618 6.41087 6.43767 6.45806 6.91084 7.12047 7.47011 8.97989 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037343 B = 0.004685 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.633733 B = 5975.214557 C = 6165.830761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.046 3.954 10 C -0.089 4.089 11 C 0.076 3.924 12 N -0.519 5.519 13 C 0.091 3.909 14 H 0.082 0.918 15 C -0.147 4.147 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.137 4.137 20 C 0.117 3.883 21 H 0.049 0.951 22 O -0.560 6.560 23 C 0.062 3.938 24 C -0.099 4.099 25 H 0.260 0.740 26 H -0.015 1.015 27 H 0.024 0.976 28 H 0.056 0.944 29 H 0.004 0.996 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.380 0.620 42 H 0.022 0.978 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 -18.868 5.362 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.027 3.973 10 C -0.128 4.128 11 C -0.051 4.051 12 N -0.242 5.242 13 C -0.017 4.017 14 H 0.100 0.900 15 C -0.187 4.187 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.175 4.175 20 C 0.057 3.943 21 H 0.067 0.933 22 O -0.366 6.366 23 C -0.066 4.066 24 C -0.137 4.137 25 H 0.069 0.931 26 H 0.003 0.997 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.228 0.772 42 H 0.040 0.960 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.567 -18.577 5.278 19.844 hybrid contribution -0.507 1.178 -0.542 1.393 sum -5.074 -17.398 4.735 18.731 Atomic orbital electron populations 1.70028 1.07186 1.27065 1.51495 1.25756 0.95705 1.02369 0.94788 0.85671 0.78447 0.79104 0.78784 1.20751 1.19753 1.19650 1.21570 0.92923 0.92395 1.50499 0.93272 1.18641 0.93119 0.92548 0.92969 1.21346 0.98879 0.94967 0.97580 1.22027 0.93137 0.91346 0.98632 1.62163 1.23062 1.02439 1.36534 1.21721 0.95572 0.91081 0.93334 0.90036 1.22578 0.98759 0.99056 0.98263 1.21280 0.97508 0.95124 1.00952 1.21376 1.01356 0.97968 0.94829 1.20440 0.99453 0.99594 0.95758 1.21089 1.01207 0.94622 1.00626 1.21478 0.95322 0.88414 0.89044 0.93266 1.86837 1.59134 1.59768 1.30824 1.22062 0.96076 0.97822 0.90601 1.21532 0.97999 0.94383 0.99767 0.93109 0.99711 0.95762 0.92513 0.97837 0.90112 0.93845 0.91960 0.91553 0.92091 0.91991 0.90286 0.90515 0.91759 0.91970 0.90436 0.77202 0.96022 0.90233 0.93087 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.25 11.37 21.45 0.24 -55.01 16 2 C 0.01 0.70 5.31 84.66 0.45 1.15 16 3 Si 0.95 45.39 29.54 68.60 2.03 47.42 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.42 8.56 25.60 0.22 -31.20 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.05 2.47 2.16 -11.46 -0.02 2.45 16 10 C -0.09 -4.63 5.12 30.65 0.16 -4.47 16 11 C 0.08 3.21 4.54 86.33 0.39 3.60 16 12 N -0.52 -19.32 4.06 -873.81 -3.55 -22.87 16 13 C 0.09 2.59 1.73 44.46 0.08 2.67 16 14 H 0.08 2.22 6.63 -2.39 -0.02 2.20 16 15 C -0.15 -3.82 4.14 31.32 0.13 -3.69 16 16 C -0.11 -2.11 5.31 30.14 0.16 -1.95 16 17 C -0.12 -1.82 5.61 30.20 0.17 -1.65 16 18 C -0.12 -1.65 5.26 28.74 0.15 -1.49 16 19 C -0.14 -2.42 4.93 28.73 0.14 -2.28 16 20 C 0.12 2.85 2.01 30.19 0.06 2.91 16 21 H 0.05 1.21 6.94 -2.39 -0.02 1.19 16 22 O -0.56 -15.93 10.52 -148.98 -1.57 -17.50 16 23 C 0.06 2.35 4.84 86.33 0.42 2.77 16 24 C -0.10 -4.48 5.32 30.65 0.16 -4.32 16 25 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 26 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 3.27 6.17 -2.39 -0.01 3.25 16 29 H 0.00 0.16 6.40 -2.39 -0.02 0.14 16 30 H 0.08 3.21 5.53 -2.39 -0.01 3.20 16 31 H 0.04 1.35 6.02 -2.39 -0.01 1.33 16 32 H 0.06 1.60 7.43 -2.39 -0.02 1.59 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.16 6.64 -2.39 -0.02 1.14 16 35 H 0.06 1.04 6.97 -2.39 -0.02 1.03 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.89 7.47 -2.39 -0.02 0.87 16 39 H 0.06 1.19 7.47 -2.39 -0.02 1.17 16 40 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 41 H 0.38 7.31 9.05 -74.05 -0.67 6.64 16 42 H 0.02 0.83 6.92 -2.38 -0.02 0.81 16 43 H 0.08 2.59 8.12 -2.39 -0.02 2.57 16 44 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -66.81 320.55 0.11 -66.70 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.29 Total: 16.75 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 2.66 Total: -35.50 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -3.30 Total: -77.87 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -1.57 Total: -17.50 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -66.81 0.11 -66.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397178477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.067 kcal (2) G-P(sol) polarization free energy of solvation -66.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds