Wall clock time and date at job start Mon Mar 30 2020 07:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99928 * 2 1 4 4 H 1.48499 * 109.47375 * 274.98895 * 3 2 1 5 5 H 1.48500 * 109.47117 * 34.99407 * 3 2 1 6 6 H 1.48508 * 109.46932 * 154.99275 * 3 2 1 7 7 C 1.37881 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99643 * 189.55165 * 7 2 1 9 9 C 1.50700 * 119.99776 * 9.55695 * 7 2 1 10 10 H 1.08994 * 109.50721 * 305.50363 * 9 7 2 11 11 C 1.53115 * 109.50728 * 65.63126 * 9 7 2 12 12 C 1.53113 * 109.16454 * 177.59333 * 11 9 7 13 13 C 1.53037 * 109.27643 * 302.34451 * 12 11 9 14 14 N 1.46840 * 109.52584 * 59.17666 * 13 12 11 15 15 C 1.46903 * 111.00240 * 174.15905 * 14 13 12 16 16 C 1.52999 * 109.47340 * 294.21064 * 15 14 13 17 17 C 1.53001 * 109.47255 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47218 * 180.02562 * 17 16 15 19 19 H 1.08998 * 110.27769 * 54.29629 * 18 17 16 20 20 C 1.54939 * 110.30985 * 176.39304 * 18 17 16 21 21 C 1.55416 * 100.89726 * 155.28393 * 20 18 17 22 22 C 1.54388 * 102.30450 * 325.99063 * 21 20 18 23 23 O 1.43231 * 107.58915 * 21.28262 * 22 21 20 24 24 C 1.46842 * 111.19911 * 298.25836 * 14 13 12 25 25 H 0.96997 * 120.00070 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.51706 * 297.49538 * 11 9 7 27 27 H 1.08998 * 109.52506 * 57.61815 * 11 9 7 28 28 H 1.09004 * 109.50542 * 62.28297 * 12 11 9 29 29 H 1.09001 * 109.50554 * 182.39923 * 12 11 9 30 30 H 1.09006 * 109.46138 * 299.15917 * 13 12 11 31 31 H 1.09009 * 109.46199 * 179.19531 * 13 12 11 32 32 H 1.09004 * 109.47390 * 174.20906 * 15 14 13 33 33 H 1.09002 * 109.46996 * 54.21094 * 15 14 13 34 34 H 1.09006 * 109.46717 * 60.00058 * 16 15 14 35 35 H 1.08993 * 109.47030 * 299.99923 * 16 15 14 36 36 H 1.08994 * 109.47142 * 60.00101 * 17 16 15 37 37 H 1.09002 * 109.46814 * 300.00425 * 17 16 15 38 38 H 1.08998 * 111.12421 * 273.27450 * 20 18 17 39 39 H 1.08996 * 111.13101 * 37.43255 * 20 18 17 40 40 H 1.08994 * 110.88554 * 207.75077 * 21 20 18 41 41 H 1.09003 * 110.93519 * 84.24337 * 21 20 18 42 42 H 1.09001 * 109.82406 * 261.76668 * 22 21 20 43 43 H 1.09001 * 109.83049 * 140.79713 * 22 21 20 44 44 H 1.09007 * 109.46254 * 181.75723 * 24 14 13 45 45 H 1.08996 * 109.46517 * 301.73611 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5033 2.6198 0.8029 6 1 3.5955 1.4119 0.5919 7 6 2.0046 -1.1941 0.0005 8 1 3.0733 -1.2005 0.1557 9 6 1.2667 -2.4902 -0.2156 10 1 0.4551 -2.5719 0.5074 11 6 0.6932 -2.5215 -1.6349 12 6 -0.0028 -3.8656 -1.8663 13 6 0.9993 -4.9994 -1.6375 14 7 1.5183 -4.9263 -0.2658 15 6 2.3777 -6.0794 0.0341 16 6 1.5373 -7.3579 0.0247 17 6 2.4325 -8.5589 0.3364 18 6 1.5922 -9.8375 0.3264 19 1 1.0531 -9.9279 -0.6166 20 6 2.4954 -11.0763 0.5505 21 6 1.4700 -12.0849 1.1393 22 6 0.5315 -11.1648 1.9493 23 8 0.6716 -9.8377 1.4291 24 6 2.2320 -3.6640 -0.0347 25 1 -0.4850 0.8400 0.0004 26 1 -0.0277 -1.7127 -1.7544 27 1 1.5007 -2.3993 -2.3568 28 1 -0.8348 -3.9692 -1.1698 29 1 -0.3761 -3.9108 -2.8894 30 1 1.8242 -4.9031 -2.3436 31 1 0.5031 -5.9584 -1.7875 32 1 2.8303 -5.9494 1.0171 33 1 3.1614 -6.1542 -0.7197 34 1 1.0848 -7.4880 -0.9584 35 1 0.7536 -7.2831 0.7785 36 1 2.8854 -8.4291 1.3193 37 1 3.2160 -8.6335 -0.4177 38 1 2.9074 -11.4377 -0.3918 39 1 3.2883 -10.8602 1.2664 40 1 1.9641 -12.8056 1.7909 41 1 0.9237 -12.5935 0.3449 42 1 0.8153 -11.1814 3.0016 43 1 -0.5002 -11.4986 1.8380 44 1 2.6312 -3.6529 0.9796 45 1 3.0509 -3.5738 -0.7483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397600350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:38 Heat of formation + Delta-G solvation = -89.206744 kcal Electronic energy + Delta-G solvation = -20676.886008 eV Core-core repulsion = 17692.147128 eV Total energy + Delta-G solvation = -2984.738880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42441 -39.81720 -36.34367 -34.69260 -33.21338 -32.83948 -31.70011 -29.81699 -26.91272 -26.46760 -24.12217 -23.39094 -22.58980 -21.92015 -21.37922 -20.37162 -18.42398 -17.82011 -16.99246 -16.63440 -16.34273 -16.22023 -15.61611 -15.28659 -15.00218 -14.64396 -14.50122 -14.19501 -14.07299 -13.82751 -13.44688 -13.30063 -12.84014 -12.81355 -12.65079 -12.61018 -12.50760 -12.28890 -12.05646 -11.91709 -11.72877 -11.63721 -11.53270 -11.41709 -11.32995 -10.73991 -10.64540 -10.41731 -10.39492 -9.08708 -8.12366 -6.21592 1.40370 1.41092 1.51828 2.42718 2.95798 3.09785 3.17497 3.63500 3.77424 4.04201 4.06277 4.15699 4.19914 4.25202 4.33311 4.36960 4.40397 4.54686 4.61366 4.64776 4.74987 4.77507 4.81111 4.86823 4.89867 4.92854 4.95775 4.97999 5.02142 5.09870 5.12384 5.18080 5.26195 5.37835 5.42134 5.44293 5.50758 5.63280 5.95649 6.04702 6.18879 6.20927 6.41968 6.47644 6.91640 7.44979 8.96655 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042559 B = 0.003111 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.751789 B = 8998.454026 C = 9128.532087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.051 3.949 10 H -0.002 1.002 11 C -0.098 4.098 12 C -0.112 4.112 13 C 0.066 3.934 14 N -0.555 5.555 15 C 0.058 3.942 16 C -0.102 4.102 17 C -0.110 4.110 18 C 0.075 3.925 19 H 0.071 0.929 20 C -0.148 4.148 21 C -0.151 4.151 22 C 0.039 3.961 23 O -0.409 6.409 24 C 0.082 3.918 25 H 0.261 0.739 26 H 0.038 0.962 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.028 0.972 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.745 -24.003 -1.613 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.070 0.930 9 C 0.032 3.968 10 H 0.016 0.984 11 C -0.137 4.137 12 C -0.149 4.149 13 C -0.061 4.061 14 N -0.279 5.279 15 C -0.070 4.070 16 C -0.140 4.140 17 C -0.148 4.148 18 C 0.018 3.982 19 H 0.089 0.911 20 C -0.186 4.186 21 C -0.188 4.188 22 C -0.037 4.037 23 O -0.329 6.329 24 C -0.045 4.045 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.096 -23.728 -1.208 24.109 hybrid contribution 0.804 1.255 -0.345 1.529 sum 4.900 -22.473 -1.552 23.054 Atomic orbital electron populations 1.70117 1.07393 1.27238 1.50928 1.25743 0.95553 1.02446 0.94683 0.85624 0.78905 0.79481 0.78149 1.20045 1.20942 1.19131 1.21506 0.94106 0.92535 1.49483 0.93016 1.18595 0.93662 0.91401 0.93164 0.98375 1.21413 0.98270 0.95930 0.98038 1.21591 0.98004 0.94757 1.00595 1.22052 0.97028 0.99029 0.88028 1.61912 1.38276 1.02245 1.25496 1.22139 0.94222 0.90227 1.00393 1.21443 0.98214 0.92601 1.01720 1.21674 0.97708 0.92583 1.02824 1.23130 0.89656 0.95594 0.89829 0.91125 1.23331 0.98130 0.94048 1.03048 1.23137 0.96942 0.98259 1.00479 1.23283 1.00116 0.82027 0.98291 1.88454 1.65400 1.29342 1.49746 1.21962 0.94861 0.89094 0.98606 0.93036 0.94314 0.95012 0.93399 0.90869 0.95359 0.89293 0.91660 0.94559 0.91700 0.92958 0.91696 0.89006 0.88198 0.90123 0.88557 0.89758 0.91270 0.91274 0.92938 0.96495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.42 12.19 21.45 0.26 -55.16 16 2 C 0.01 0.84 5.22 84.66 0.44 1.29 16 3 Si 0.95 44.76 29.55 68.60 2.03 46.79 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.54 -30.87 8.48 25.60 0.22 -30.66 16 8 H 0.05 2.90 7.77 -2.91 -0.02 2.88 16 9 C 0.05 2.70 2.13 -11.49 -0.02 2.67 16 10 H 0.00 -0.12 8.09 -2.39 -0.02 -0.14 16 11 C -0.10 -4.82 5.09 30.67 0.16 -4.66 16 12 C -0.11 -4.43 6.09 30.64 0.19 -4.24 16 13 C 0.07 2.29 5.29 86.33 0.46 2.75 16 14 N -0.55 -21.14 4.66 -896.34 -4.17 -25.31 16 15 C 0.06 1.73 4.96 86.30 0.43 2.16 16 16 C -0.10 -2.62 5.07 30.59 0.16 -2.46 16 17 C -0.11 -2.16 4.95 30.59 0.15 -2.00 16 18 C 0.07 1.38 3.41 31.26 0.11 1.49 16 19 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 20 C -0.15 -1.84 6.58 32.09 0.21 -1.63 16 21 C -0.15 -1.69 7.02 31.90 0.22 -1.46 16 22 C 0.04 0.65 7.80 72.45 0.56 1.21 16 23 O -0.41 -9.77 10.75 -148.98 -1.60 -11.37 16 24 C 0.08 3.68 4.68 86.33 0.40 4.08 16 25 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.04 2.12 6.99 -2.38 -0.02 2.10 16 27 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.09 2.61 6.21 -2.38 -0.01 2.60 16 32 H 0.06 1.99 7.99 -2.38 -0.02 1.97 16 33 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 34 H 0.06 1.58 6.43 -2.38 -0.02 1.56 16 35 H 0.05 1.61 7.95 -2.39 -0.02 1.59 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 0.99 8.06 -2.39 -0.02 0.97 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 2.36 8.02 -2.38 -0.02 2.34 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -66.15 345.01 1.11 -65.04 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.91 Total: 11.47 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 3.68 Total: -31.46 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -3.91 Total: -80.47 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.60 Total: -11.37 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -66.15 1.11 -65.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397600350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.164 kcal (2) G-P(sol) polarization free energy of solvation -66.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds