Wall clock time and date at job start Mon Mar 30 2020 07:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48498 * 109.47128 * 269.99626 * 3 2 1 5 5 H 1.48498 * 109.47202 * 29.99582 * 3 2 1 6 6 H 1.48496 * 109.47204 * 149.99506 * 3 2 1 7 7 C 1.37871 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00451 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99894 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.50034 * 59.92241 * 9 7 2 11 11 C 1.53121 * 109.50193 * 299.80695 * 9 7 2 12 12 C 1.53122 * 109.15888 * 182.40662 * 11 9 7 13 13 C 1.53036 * 109.27855 * 57.65049 * 12 11 9 14 14 N 1.46845 * 109.52432 * 300.82103 * 13 12 11 15 15 C 1.46906 * 110.99779 * 185.83661 * 14 13 12 16 16 C 1.53004 * 109.47006 * 45.79454 * 15 14 13 17 17 C 1.52991 * 109.47312 * 179.97438 * 16 15 14 18 18 C 1.52995 * 109.47470 * 179.97438 * 17 16 15 19 19 H 1.09000 * 110.35504 * 304.31363 * 18 17 16 20 20 C 1.54947 * 110.31310 * 182.16724 * 18 17 16 21 21 C 1.55457 * 100.98961 * 204.69369 * 20 18 17 22 22 C 1.54382 * 102.18540 * 34.03935 * 21 20 18 23 23 O 1.43233 * 107.66464 * 338.74226 * 22 21 20 24 24 C 1.46852 * 111.19667 * 61.74827 * 14 13 12 25 25 H 0.97002 * 119.99833 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.52035 * 302.30737 * 11 9 7 27 27 H 1.08993 * 109.52387 * 62.43291 * 11 9 7 28 28 H 1.09002 * 109.50148 * 177.59710 * 12 11 9 29 29 H 1.08996 * 109.49847 * 297.71212 * 12 11 9 30 30 H 1.09001 * 109.46084 * 180.80467 * 13 12 11 31 31 H 1.09001 * 109.45846 * 60.84029 * 13 12 11 32 32 H 1.08997 * 109.47668 * 285.79416 * 15 14 13 33 33 H 1.08997 * 109.46723 * 165.78880 * 15 14 13 34 34 H 1.09002 * 109.47267 * 59.99215 * 16 15 14 35 35 H 1.09002 * 109.46914 * 300.00051 * 16 15 14 36 36 H 1.09010 * 109.47027 * 59.99830 * 17 16 15 37 37 H 1.09002 * 109.47466 * 300.00072 * 17 16 15 38 38 H 1.08999 * 111.12360 * 322.55868 * 20 18 17 39 39 H 1.09001 * 111.12353 * 86.68173 * 20 18 17 40 40 H 1.08994 * 110.83103 * 275.89000 * 21 20 18 41 41 H 1.08999 * 110.92148 * 152.22878 * 21 20 18 42 42 H 1.09002 * 109.83024 * 219.18066 * 22 21 20 43 43 H 1.08996 * 109.83002 * 98.29659 * 22 21 20 44 44 H 1.08993 * 109.46537 * 58.26602 * 24 14 13 45 45 H 1.09002 * 109.45837 * 178.24026 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8751 -0.6789 0.8902 11 6 4.0232 -0.4768 -1.2513 12 6 5.5532 -0.5339 -1.2733 13 6 6.0049 -1.9956 -1.2358 14 7 5.4908 -2.6371 -0.0191 15 6 6.0187 -4.0009 0.1202 16 6 7.5240 -3.9956 -0.1536 17 6 8.0740 -5.4158 -0.0079 18 6 9.5791 -5.4105 -0.2823 19 1 9.7841 -4.9829 -1.2637 20 6 10.1471 -6.8494 -0.1933 21 6 11.6351 -6.5598 0.1510 22 6 11.5264 -5.2936 1.0274 23 8 10.2693 -4.6712 0.7378 24 6 4.0224 -2.6366 0.0015 25 1 -0.4850 0.8401 -0.0004 26 1 3.6276 -0.9687 -2.1399 27 1 3.6967 0.5629 -1.2346 28 1 5.9219 -0.0622 -2.1842 29 1 5.9494 -0.0082 -0.4045 30 1 7.0941 -2.0392 -1.2369 31 1 5.6198 -2.5172 -2.1120 32 1 5.5219 -4.6576 -0.5939 33 1 5.8349 -4.3600 1.1328 34 1 8.0209 -3.3388 0.5605 35 1 7.7078 -3.6364 -1.1662 36 1 7.5771 -6.0728 -0.7219 37 1 7.8902 -5.7745 1.0048 38 1 9.6634 -7.4140 0.6037 39 1 10.0573 -7.3669 -1.1484 40 1 12.2099 -6.3579 -0.7528 41 1 12.0721 -7.3848 0.7137 42 1 12.3411 -4.6091 0.7910 43 1 11.5687 -5.5686 2.0813 44 1 3.6466 -3.1552 -0.8804 45 1 3.6717 -3.1459 0.8992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397600354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:41 Heat of formation + Delta-G solvation = -59.802053 kcal Electronic energy + Delta-G solvation = -20821.556083 eV Core-core repulsion = 17838.092286 eV Total energy + Delta-G solvation = -2983.463797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73335 -38.53909 -35.11788 -33.02089 -32.36920 -31.77100 -30.27141 -28.93571 -25.57522 -24.94798 -23.10596 -22.03011 -21.69945 -21.09690 -19.95239 -18.81194 -17.17616 -16.67325 -16.19462 -15.60448 -15.26817 -14.71437 -14.33110 -14.09638 -13.83330 -13.50828 -13.26009 -13.09205 -12.92388 -12.53629 -12.20951 -12.12825 -12.02712 -11.86965 -11.53951 -11.19855 -11.13966 -10.99738 -10.92662 -10.82155 -10.46190 -10.26612 -9.99609 -9.86055 -9.70335 -9.60273 -9.01566 -8.85512 -8.46198 -7.69943 -6.02133 -4.00821 3.32989 3.44032 3.48512 3.57419 4.16451 4.28652 4.47675 4.51645 4.61054 4.82482 4.90604 5.04136 5.13695 5.26457 5.30204 5.36862 5.40054 5.48279 5.51121 5.58267 5.61179 5.68495 5.72585 5.79383 5.82632 5.91087 6.01415 6.09555 6.21168 6.34098 6.36639 6.39733 6.44552 6.58367 6.68524 6.84772 6.88910 6.91408 7.27538 7.50304 7.72375 7.72829 7.94419 8.57789 9.01150 9.61128 11.11200 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.045799 B = 0.003335 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.217731 B = 8393.360019 C = 8665.365724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.019 3.981 10 H 0.035 0.965 11 C -0.122 4.122 12 C -0.120 4.120 13 C 0.058 3.942 14 N -0.542 5.542 15 C 0.057 3.943 16 C -0.119 4.119 17 C -0.116 4.116 18 C 0.081 3.919 19 H 0.069 0.931 20 C -0.153 4.153 21 C -0.157 4.157 22 C 0.050 3.950 23 O -0.375 6.375 24 C 0.077 3.923 25 H 0.263 0.737 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.025 0.975 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.478 -12.363 -1.751 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.000 4.000 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.158 4.158 13 C -0.070 4.070 14 N -0.267 5.267 15 C -0.072 4.072 16 C -0.157 4.157 17 C -0.154 4.154 18 C 0.024 3.976 19 H 0.087 0.913 20 C -0.191 4.191 21 C -0.195 4.195 22 C -0.027 4.027 23 O -0.295 6.295 24 C -0.050 4.050 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 22.392 -11.801 -1.245 25.342 hybrid contribution 0.159 0.239 -0.901 0.946 sum 22.551 -11.562 -2.146 25.433 Atomic orbital electron populations 1.69907 1.06308 1.26878 1.51146 1.24986 0.94670 0.99068 0.94447 0.86816 0.80057 0.83409 0.77829 1.20761 1.22674 1.18752 1.21023 0.88871 0.94449 1.50772 0.91014 1.19162 0.95851 0.91267 0.93692 0.94661 1.22016 0.92744 1.00128 1.01070 1.21664 0.97999 0.95466 1.00694 1.22097 0.99011 0.95268 0.90644 1.62062 1.10164 1.16895 1.37531 1.22092 0.94125 0.90119 1.00819 1.21701 0.95414 0.96283 1.02282 1.21712 0.92775 0.98231 1.02691 1.23028 0.92888 0.90055 0.91615 0.91280 1.23355 0.95170 0.97633 1.02948 1.23145 0.97320 0.98423 1.00589 1.23088 0.86883 0.93592 0.99144 1.88476 1.31338 1.51625 1.58074 1.22075 0.83765 0.99516 0.99597 0.92748 0.92670 0.93627 0.92950 0.91855 0.91202 0.95718 0.95591 0.91113 0.90437 0.91915 0.90891 0.91091 0.90196 0.89988 0.90647 0.90139 0.91651 0.91472 0.95705 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 22.64 24.36 -169.99 -4.14 18.49 16 4 H -0.28 -6.96 6.89 56.52 0.39 -6.57 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 7 C -0.51 -14.69 9.14 -34.44 -0.31 -15.00 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C 0.02 0.47 1.85 -91.69 -0.17 0.30 16 10 H 0.04 0.91 7.19 -51.93 -0.37 0.53 16 11 C -0.12 -2.73 4.74 -26.61 -0.13 -2.86 16 12 C -0.12 -2.23 6.09 -26.65 -0.16 -2.39 16 13 C 0.06 0.97 4.85 -3.84 -0.02 0.95 16 14 N -0.54 -9.84 4.81 -234.66 -1.13 -10.97 16 15 C 0.06 0.83 5.27 -3.82 -0.02 0.81 16 16 C -0.12 -1.49 4.38 -26.73 -0.12 -1.60 16 17 C -0.12 -1.17 4.96 -26.74 -0.13 -1.30 16 18 C 0.08 0.77 3.43 -25.71 -0.09 0.68 16 19 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 20 C -0.15 -1.09 6.57 -24.40 -0.16 -1.25 16 21 C -0.16 -1.00 7.03 -24.70 -0.17 -1.17 16 22 C 0.05 0.41 7.79 37.88 0.30 0.71 16 23 O -0.38 -4.32 10.69 -35.23 -0.38 -4.70 16 24 C 0.08 1.63 4.65 -3.83 -0.02 1.62 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.08 3.37 -51.93 -0.17 0.90 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.03 5.81 -51.93 -0.30 0.73 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 35 H 0.06 0.77 6.21 -51.93 -0.32 0.45 16 36 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -31.31 335.57 -9.48 -40.79 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -8.36 Total: -2.74 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -1.30 Total: -18.55 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.35 Total: -38.35 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.38 Total: -4.70 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.14 Total: 18.49 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.31 -9.48 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397600354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.017 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds