Wall clock time and date at job start Mon Mar 30 2020 07:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48498 * 109.47128 * 269.99626 * 3 2 1 5 5 H 1.48498 * 109.47202 * 29.99582 * 3 2 1 6 6 H 1.48496 * 109.47204 * 149.99506 * 3 2 1 7 7 C 1.37871 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00451 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99894 * 180.02562 * 7 2 1 10 10 H 1.08993 * 109.50034 * 59.92241 * 9 7 2 11 11 C 1.53121 * 109.50193 * 299.80695 * 9 7 2 12 12 C 1.53122 * 109.15888 * 182.40662 * 11 9 7 13 13 C 1.53036 * 109.27855 * 57.65049 * 12 11 9 14 14 N 1.46845 * 109.52432 * 300.82103 * 13 12 11 15 15 C 1.46906 * 110.99779 * 185.83661 * 14 13 12 16 16 C 1.53004 * 109.47006 * 45.79454 * 15 14 13 17 17 C 1.52991 * 109.47312 * 179.97438 * 16 15 14 18 18 C 1.52995 * 109.47470 * 179.97438 * 17 16 15 19 19 H 1.09000 * 110.35504 * 304.31363 * 18 17 16 20 20 C 1.54947 * 110.31310 * 182.16724 * 18 17 16 21 21 C 1.55457 * 100.98961 * 204.69369 * 20 18 17 22 22 C 1.54382 * 102.18540 * 34.03935 * 21 20 18 23 23 O 1.43233 * 107.66464 * 338.74226 * 22 21 20 24 24 C 1.46852 * 111.19667 * 61.74827 * 14 13 12 25 25 H 0.97002 * 119.99833 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.52035 * 302.30737 * 11 9 7 27 27 H 1.08993 * 109.52387 * 62.43291 * 11 9 7 28 28 H 1.09002 * 109.50148 * 177.59710 * 12 11 9 29 29 H 1.08996 * 109.49847 * 297.71212 * 12 11 9 30 30 H 1.09001 * 109.46084 * 180.80467 * 13 12 11 31 31 H 1.09001 * 109.45846 * 60.84029 * 13 12 11 32 32 H 1.08997 * 109.47668 * 285.79416 * 15 14 13 33 33 H 1.08997 * 109.46723 * 165.78880 * 15 14 13 34 34 H 1.09002 * 109.47267 * 59.99215 * 16 15 14 35 35 H 1.09002 * 109.46914 * 300.00051 * 16 15 14 36 36 H 1.09010 * 109.47027 * 59.99830 * 17 16 15 37 37 H 1.09002 * 109.47466 * 300.00072 * 17 16 15 38 38 H 1.08999 * 111.12360 * 322.55868 * 20 18 17 39 39 H 1.09001 * 111.12353 * 86.68173 * 20 18 17 40 40 H 1.08994 * 110.83103 * 275.89000 * 21 20 18 41 41 H 1.08999 * 110.92148 * 152.22878 * 21 20 18 42 42 H 1.09002 * 109.83024 * 219.18066 * 22 21 20 43 43 H 1.08996 * 109.83002 * 98.29659 * 22 21 20 44 44 H 1.08993 * 109.46537 * 58.26602 * 24 14 13 45 45 H 1.09002 * 109.45837 * 178.24026 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8751 -0.6789 0.8902 11 6 4.0232 -0.4768 -1.2513 12 6 5.5532 -0.5339 -1.2733 13 6 6.0049 -1.9956 -1.2358 14 7 5.4908 -2.6371 -0.0191 15 6 6.0187 -4.0009 0.1202 16 6 7.5240 -3.9956 -0.1536 17 6 8.0740 -5.4158 -0.0079 18 6 9.5791 -5.4105 -0.2823 19 1 9.7841 -4.9829 -1.2637 20 6 10.1471 -6.8494 -0.1933 21 6 11.6351 -6.5598 0.1510 22 6 11.5264 -5.2936 1.0274 23 8 10.2693 -4.6712 0.7378 24 6 4.0224 -2.6366 0.0015 25 1 -0.4850 0.8401 -0.0004 26 1 3.6276 -0.9687 -2.1399 27 1 3.6967 0.5629 -1.2346 28 1 5.9219 -0.0622 -2.1842 29 1 5.9494 -0.0082 -0.4045 30 1 7.0941 -2.0392 -1.2369 31 1 5.6198 -2.5172 -2.1120 32 1 5.5219 -4.6576 -0.5939 33 1 5.8349 -4.3600 1.1328 34 1 8.0209 -3.3388 0.5605 35 1 7.7078 -3.6364 -1.1662 36 1 7.5771 -6.0728 -0.7219 37 1 7.8902 -5.7745 1.0048 38 1 9.6634 -7.4140 0.6037 39 1 10.0573 -7.3669 -1.1484 40 1 12.2099 -6.3579 -0.7528 41 1 12.0721 -7.3848 0.7137 42 1 12.3411 -4.6091 0.7910 43 1 11.5687 -5.5686 2.0813 44 1 3.6466 -3.1552 -0.8804 45 1 3.6717 -3.1459 0.8992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397600354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:41 Heat of formation + Delta-G solvation = -80.365393 kcal Electronic energy + Delta-G solvation = -20822.447776 eV Core-core repulsion = 17838.092286 eV Total energy + Delta-G solvation = -2984.355490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47608 -39.98048 -36.50463 -34.68767 -33.41219 -32.90163 -32.02604 -29.91883 -26.92009 -26.60859 -24.34530 -23.41048 -22.56216 -21.92494 -21.22278 -20.48012 -18.82360 -17.83615 -17.34063 -16.73609 -16.23851 -16.12104 -15.74616 -15.45088 -15.22535 -14.82676 -14.68921 -14.23412 -14.18527 -13.95222 -13.60591 -13.39836 -12.96810 -12.86969 -12.69858 -12.61349 -12.35331 -12.27635 -12.07711 -11.86850 -11.75165 -11.64324 -11.50228 -11.39904 -11.38211 -10.99932 -10.72248 -10.60640 -10.39826 -9.14202 -8.31093 -6.34504 1.29363 1.36091 1.47619 2.32647 2.94545 3.03806 3.04778 3.62131 3.74454 4.01644 4.03785 4.05462 4.12035 4.17658 4.27948 4.32697 4.36115 4.43828 4.51684 4.59982 4.67848 4.73786 4.76725 4.81835 4.84576 4.86793 4.91889 4.94084 4.96905 5.02132 5.09649 5.11131 5.15339 5.23915 5.27071 5.39600 5.43296 5.44908 5.63943 5.72990 6.18241 6.19381 6.31589 6.37099 6.72687 7.31257 8.85825 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.045799 B = 0.003335 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.217731 B = 8393.360019 C = 8665.365724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.298 1.298 6 H -0.250 1.250 7 C -0.520 4.520 8 H 0.033 0.967 9 C 0.019 3.981 10 H 0.023 0.977 11 C -0.122 4.122 12 C -0.116 4.116 13 C 0.058 3.942 14 N -0.551 5.551 15 C 0.057 3.943 16 C -0.108 4.108 17 C -0.111 4.111 18 C 0.076 3.924 19 H 0.072 0.928 20 C -0.150 4.150 21 C -0.151 4.151 22 C 0.040 3.960 23 O -0.407 6.407 24 C 0.089 3.911 25 H 0.266 0.734 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.029 0.971 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.017 0.983 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.562 -12.643 -2.701 28.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.226 1.226 6 H -0.174 1.174 7 C -0.558 4.558 8 H 0.051 0.949 9 C 0.000 4.000 10 H 0.041 0.959 11 C -0.159 4.159 12 C -0.154 4.154 13 C -0.069 4.069 14 N -0.276 5.276 15 C -0.071 4.071 16 C -0.145 4.145 17 C -0.149 4.149 18 C 0.019 3.981 19 H 0.090 0.910 20 C -0.188 4.188 21 C -0.188 4.188 22 C -0.036 4.036 23 O -0.327 6.327 24 C -0.039 4.039 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.035 0.965 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 25.506 -12.103 -2.199 28.317 hybrid contribution -0.843 0.235 -0.570 1.044 sum 24.663 -11.867 -2.768 27.509 Atomic orbital electron populations 1.70049 1.08146 1.28018 1.52880 1.25844 0.95423 1.02973 0.94163 0.85783 0.79024 0.78602 0.78690 1.19146 1.22629 1.17385 1.21341 0.91460 0.93008 1.50002 0.94910 1.19074 0.92913 0.93639 0.94354 0.95909 1.21917 0.95939 0.98809 0.99280 1.21654 0.94607 0.96902 1.02206 1.22176 1.00567 0.94113 0.90079 1.62008 1.07793 1.19192 1.38609 1.22165 0.95663 0.88290 1.00942 1.21584 0.93255 0.97691 1.02018 1.21678 0.93562 0.96776 1.02913 1.23111 0.92215 0.91482 0.91278 0.91016 1.23350 0.95371 0.96177 1.03853 1.23145 0.97070 0.97866 1.00760 1.23268 0.85943 0.94615 0.99811 1.88440 1.32683 1.52884 1.58708 1.21774 0.86183 0.97142 0.98823 0.92535 0.93271 0.94682 0.89861 0.92056 0.88397 0.95301 0.95023 0.91340 0.92112 0.91219 0.89354 0.91594 0.90211 0.88391 0.89770 0.88624 0.91188 0.91271 0.96527 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 2 C 0.01 0.77 5.45 84.65 0.46 1.23 16 3 Si 0.95 46.85 24.36 68.60 1.67 48.52 16 4 H -0.27 -12.35 6.89 99.48 0.69 -11.67 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.25 -11.66 6.53 99.48 0.65 -11.01 16 7 C -0.52 -30.72 9.14 25.60 0.23 -30.48 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 9 C 0.02 0.95 1.85 -11.48 -0.02 0.93 16 10 H 0.02 1.17 7.19 -2.39 -0.02 1.15 16 11 C -0.12 -5.28 4.74 30.68 0.15 -5.14 16 12 C -0.12 -3.94 6.09 30.65 0.19 -3.75 16 13 C 0.06 1.79 4.85 86.33 0.42 2.21 16 14 N -0.55 -19.20 4.81 -896.34 -4.31 -23.51 16 15 C 0.06 1.59 5.27 86.30 0.46 2.04 16 16 C -0.11 -2.46 4.38 30.59 0.13 -2.32 16 17 C -0.11 -2.00 4.96 30.59 0.15 -1.85 16 18 C 0.08 1.27 3.43 31.26 0.11 1.38 16 19 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 20 C -0.15 -1.72 6.57 32.11 0.21 -1.51 16 21 C -0.15 -1.52 7.03 31.91 0.22 -1.30 16 22 C 0.04 0.59 7.79 72.45 0.56 1.16 16 23 O -0.41 -8.78 10.69 -148.98 -1.59 -10.37 16 24 C 0.09 3.75 4.65 86.33 0.40 4.15 16 25 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.03 1.58 3.37 -2.39 -0.01 1.57 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.10 2.52 5.81 -2.39 -0.01 2.51 16 31 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.03 0.86 8.08 -2.39 -0.02 0.84 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.61 7.91 -2.39 -0.02 1.59 16 35 H 0.07 1.49 6.21 -2.39 -0.01 1.48 16 36 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 0.92 8.06 -2.39 -0.02 0.90 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 2.44 8.12 -2.39 -0.02 2.42 16 Total: -1.00 -68.94 335.57 0.59 -68.36 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.85 Total: 10.90 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 3.67 Total: -33.26 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -4.01 Total: -84.14 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.59 Total: -10.37 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.67 Total: 48.52 kcal Total: -68.94 0.59 -68.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397600354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.010 kcal (2) G-P(sol) polarization free energy of solvation -68.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds