Wall clock time and date at job start Mon Mar 30 2020 07:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47241 * 240.00017 * 3 2 1 5 5 H 1.48505 * 109.46913 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47097 * 119.99740 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99938 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53326 * 299.90188 * 9 7 2 11 11 C 1.53120 * 109.50132 * 59.99803 * 9 7 2 12 12 C 1.53123 * 109.21163 * 177.62791 * 11 9 7 13 13 C 1.53037 * 109.27398 * 302.31409 * 12 11 9 14 14 N 1.46848 * 109.52381 * 59.18254 * 13 12 11 15 15 C 1.46900 * 110.99918 * 174.15634 * 14 13 12 16 16 C 1.53006 * 109.47181 * 66.04184 * 15 14 13 17 17 C 1.52996 * 109.47274 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.47317 * 180.02562 * 17 16 15 19 19 H 1.08997 * 109.82718 * 305.57221 * 18 17 16 20 20 C 1.54379 * 109.83284 * 184.58886 * 18 17 16 21 21 C 1.55308 * 102.25309 * 219.12923 * 20 18 17 22 22 C 1.54954 * 100.94035 * 34.13526 * 21 20 18 23 23 O 1.43246 * 109.83020 * 66.45270 * 18 17 16 24 24 C 1.46845 * 111.19518 * 298.25146 * 14 13 12 25 25 H 0.97002 * 120.00547 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.52427 * 57.69065 * 11 9 7 27 27 H 1.08995 * 109.52208 * 297.56384 * 11 9 7 28 28 H 1.08996 * 109.50077 * 62.25431 * 12 11 9 29 29 H 1.08992 * 109.50259 * 182.37210 * 12 11 9 30 30 H 1.09006 * 109.45986 * 179.19524 * 13 12 11 31 31 H 1.08996 * 109.46288 * 299.15727 * 13 12 11 32 32 H 1.08996 * 109.47225 * 186.04271 * 15 14 13 33 33 H 1.09007 * 109.47465 * 306.04862 * 15 14 13 34 34 H 1.08996 * 109.47113 * 300.00157 * 16 15 14 35 35 H 1.09002 * 109.46981 * 59.99663 * 16 15 14 36 36 H 1.08996 * 109.47301 * 300.00192 * 17 16 15 37 37 H 1.09011 * 109.47108 * 60.00238 * 17 16 15 38 38 H 1.08992 * 110.84835 * 337.32193 * 20 18 17 39 39 H 1.09005 * 110.84811 * 100.94300 * 20 18 17 40 40 H 1.08992 * 111.12894 * 276.21676 * 21 20 18 41 41 H 1.08997 * 111.15932 * 152.06743 * 21 20 18 42 42 H 1.09005 * 110.30612 * 204.63748 * 22 21 20 43 43 H 1.08999 * 110.39238 * 82.51488 * 22 21 20 44 44 H 1.09003 * 109.45905 * 181.76430 * 24 14 13 45 45 H 1.09002 * 109.46166 * 301.73872 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6250 -2.5586 0.8908 11 6 0.3709 -2.5813 -1.2498 12 6 -0.3460 -3.9341 -1.2733 13 6 0.6931 -5.0572 -1.2416 14 7 1.5091 -4.9365 -0.0266 15 6 2.4255 -6.0768 0.1073 16 6 3.4527 -6.0416 -1.0262 17 6 4.4075 -7.2288 -0.8863 18 6 5.4350 -7.1932 -2.0193 19 1 4.9236 -7.1519 -2.9810 20 6 6.3307 -8.4489 -1.9538 21 6 7.7284 -7.8760 -2.3147 22 6 7.6430 -6.4673 -1.6749 23 8 6.2830 -6.0483 -1.8705 24 6 2.2440 -3.6654 -0.0047 25 1 -0.4851 0.8400 0.0004 26 1 0.9923 -2.4829 -2.1398 27 1 -0.3663 -1.7787 -1.2296 28 1 -0.9972 -4.0161 -0.4030 29 1 -0.9413 -4.0147 -2.1828 30 1 0.1855 -6.0218 -1.2438 31 1 1.3351 -4.9828 -2.1193 32 1 2.9405 -6.0184 1.0662 33 1 1.8588 -7.0066 0.0552 34 1 2.9377 -6.1000 -1.9850 35 1 4.0193 -5.1119 -0.9742 36 1 4.9224 -7.1699 0.0726 37 1 3.8411 -8.1587 -0.9380 38 1 6.3325 -8.8720 -0.9493 39 1 6.0140 -9.1901 -2.6876 40 1 7.8588 -7.8096 -3.3948 41 1 8.5246 -8.4659 -1.8609 42 1 8.3260 -5.7818 -2.1768 43 1 7.8738 -6.5188 -0.6109 44 1 2.8629 -3.6192 0.8914 45 1 2.8786 -3.5975 -0.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397600358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:44 Heat of formation + Delta-G solvation = -69.100233 kcal Electronic energy + Delta-G solvation = -21128.197027 eV Core-core repulsion = 18144.330031 eV Total energy + Delta-G solvation = -2983.866996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.67775 -38.36698 -34.76930 -32.95654 -32.27721 -31.37821 -29.76817 -28.53729 -25.30900 -24.85851 -23.14377 -21.86921 -21.39342 -20.86551 -20.53740 -18.17069 -17.10193 -16.36506 -16.09007 -15.03279 -14.95547 -14.37839 -14.24284 -13.95535 -13.91757 -13.45503 -13.16944 -12.92957 -12.34780 -12.26591 -12.14620 -11.93873 -11.72445 -11.48759 -11.35653 -11.10625 -11.03857 -10.89866 -10.76665 -10.67414 -10.59017 -10.23612 -9.91277 -9.71428 -9.59164 -9.36536 -8.93010 -8.61713 -8.22163 -7.46767 -5.89688 -3.95393 3.37832 3.41824 3.44991 3.71502 4.27452 4.47204 4.51484 4.64644 4.74707 4.95443 5.00172 5.14344 5.30181 5.35553 5.40093 5.43458 5.51303 5.58351 5.63455 5.71653 5.79716 5.84403 5.89747 5.95815 6.00697 6.12489 6.16783 6.29106 6.47476 6.52089 6.60967 6.66143 6.82717 6.87629 6.98096 7.09197 7.31612 7.50259 7.78654 7.84224 7.95566 8.18133 8.26508 8.57801 9.08708 9.68390 11.16314 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.004368 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.605920 B = 6409.140714 C = 7472.422032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.032 0.968 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.062 3.938 14 N -0.538 5.538 15 C 0.057 3.943 16 C -0.155 4.155 17 C -0.122 4.122 18 C 0.079 3.921 19 H 0.077 0.923 20 C -0.152 4.152 21 C -0.157 4.157 22 C 0.049 3.951 23 O -0.372 6.372 24 C 0.066 3.934 25 H 0.259 0.741 26 H 0.029 0.971 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.404 -17.245 -4.184 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.035 3.965 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.066 4.066 14 N -0.260 5.260 15 C -0.072 4.072 16 C -0.194 4.194 17 C -0.161 4.161 18 C 0.021 3.979 19 H 0.095 0.905 20 C -0.189 4.189 21 C -0.195 4.195 22 C -0.028 4.028 23 O -0.292 6.292 24 C -0.061 4.061 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 9.836 -16.897 -3.773 19.912 hybrid contribution 1.179 0.647 -0.760 1.545 sum 11.015 -16.250 -4.533 20.148 Atomic orbital electron populations 1.69885 1.05825 1.26312 1.50858 1.24926 0.94810 0.98875 0.95226 0.86702 0.79618 0.83362 0.78555 1.20390 1.21362 1.20329 1.21136 0.92813 0.90738 1.50470 0.92916 1.18689 0.92656 0.90396 0.94721 0.94949 1.21643 0.99993 0.94690 0.98501 1.21681 0.97242 0.96636 1.00025 1.22020 0.95475 0.98395 0.90728 1.62226 1.23614 1.02656 1.37553 1.22184 0.92952 0.94430 0.97640 1.22233 0.97847 0.99188 1.00181 1.21898 0.96764 0.99015 0.98392 1.22813 0.91553 0.84615 0.98871 0.90489 1.23196 0.94793 0.98166 1.02781 1.23266 0.97635 0.96836 1.01770 1.23361 0.84673 0.94948 0.99800 1.88518 1.17008 1.30046 1.93613 1.22327 0.96400 0.88496 0.98869 0.93090 0.95248 0.89197 0.92209 0.93704 0.92737 0.95700 0.91408 0.91951 0.92305 0.90576 0.91600 0.91338 0.90381 0.90207 0.90497 0.90128 0.89919 0.92342 0.92549 0.95754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 11.35 55.43 0.63 -25.37 16 2 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.53 8.57 -34.44 -0.30 -14.83 16 8 H 0.05 1.48 7.75 -52.49 -0.41 1.07 16 9 C 0.05 1.41 2.27 -91.62 -0.21 1.20 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.71 5.02 -26.61 -0.13 -2.84 16 12 C -0.12 -2.41 6.09 -26.65 -0.16 -2.57 16 13 C 0.06 1.14 5.05 -3.83 -0.02 1.12 16 14 N -0.54 -10.41 4.86 -234.58 -1.14 -11.55 16 15 C 0.06 0.88 5.36 -3.82 -0.02 0.86 16 16 C -0.16 -2.28 4.43 -26.73 -0.12 -2.40 16 17 C -0.12 -1.41 4.78 -26.74 -0.13 -1.54 16 18 C 0.08 0.89 3.52 -26.01 -0.09 0.80 16 19 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.15 -1.25 6.54 -24.78 -0.16 -1.41 16 21 C -0.16 -1.22 7.16 -24.48 -0.18 -1.39 16 22 C 0.05 0.49 7.78 38.19 0.30 0.79 16 23 O -0.37 -5.10 10.63 -35.23 -0.37 -5.48 16 24 C 0.07 1.47 4.07 -3.77 -0.02 1.46 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 31 H 0.02 0.46 6.75 -51.93 -0.35 0.11 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.87 8.06 -51.92 -0.42 0.45 16 34 H 0.06 0.88 6.68 -51.93 -0.35 0.54 16 35 H 0.08 1.33 6.25 -51.93 -0.32 1.01 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 45 H 0.02 0.56 6.61 -51.93 -0.34 0.21 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -29.92 340.07 -10.50 -40.42 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.39 Total: -0.86 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -1.33 Total: -19.08 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.51 Total: -36.92 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.37 Total: -5.48 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.92 -10.50 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397600358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.679 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds