Wall clock time and date at job start Mon Mar 30 2020 07:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48500 * 109.47241 * 240.00017 * 3 2 1 5 5 H 1.48505 * 109.46913 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47097 * 119.99740 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00492 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99938 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53326 * 299.90188 * 9 7 2 11 11 C 1.53120 * 109.50132 * 59.99803 * 9 7 2 12 12 C 1.53123 * 109.21163 * 177.62791 * 11 9 7 13 13 C 1.53037 * 109.27398 * 302.31409 * 12 11 9 14 14 N 1.46848 * 109.52381 * 59.18254 * 13 12 11 15 15 C 1.46900 * 110.99918 * 174.15634 * 14 13 12 16 16 C 1.53006 * 109.47181 * 66.04184 * 15 14 13 17 17 C 1.52996 * 109.47274 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.47317 * 180.02562 * 17 16 15 19 19 H 1.08997 * 109.82718 * 305.57221 * 18 17 16 20 20 C 1.54379 * 109.83284 * 184.58886 * 18 17 16 21 21 C 1.55308 * 102.25309 * 219.12923 * 20 18 17 22 22 C 1.54954 * 100.94035 * 34.13526 * 21 20 18 23 23 O 1.43246 * 109.83020 * 66.45270 * 18 17 16 24 24 C 1.46845 * 111.19518 * 298.25146 * 14 13 12 25 25 H 0.97002 * 120.00547 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.52427 * 57.69065 * 11 9 7 27 27 H 1.08995 * 109.52208 * 297.56384 * 11 9 7 28 28 H 1.08996 * 109.50077 * 62.25431 * 12 11 9 29 29 H 1.08992 * 109.50259 * 182.37210 * 12 11 9 30 30 H 1.09006 * 109.45986 * 179.19524 * 13 12 11 31 31 H 1.08996 * 109.46288 * 299.15727 * 13 12 11 32 32 H 1.08996 * 109.47225 * 186.04271 * 15 14 13 33 33 H 1.09007 * 109.47465 * 306.04862 * 15 14 13 34 34 H 1.08996 * 109.47113 * 300.00157 * 16 15 14 35 35 H 1.09002 * 109.46981 * 59.99663 * 16 15 14 36 36 H 1.08996 * 109.47301 * 300.00192 * 17 16 15 37 37 H 1.09011 * 109.47108 * 60.00238 * 17 16 15 38 38 H 1.08992 * 110.84835 * 337.32193 * 20 18 17 39 39 H 1.09005 * 110.84811 * 100.94300 * 20 18 17 40 40 H 1.08992 * 111.12894 * 276.21676 * 21 20 18 41 41 H 1.08997 * 111.15932 * 152.06743 * 21 20 18 42 42 H 1.09005 * 110.30612 * 204.63748 * 22 21 20 43 43 H 1.08999 * 110.39238 * 82.51488 * 22 21 20 44 44 H 1.09003 * 109.45905 * 181.76430 * 24 14 13 45 45 H 1.09002 * 109.46166 * 301.73872 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6250 -2.5586 0.8908 11 6 0.3709 -2.5813 -1.2498 12 6 -0.3460 -3.9341 -1.2733 13 6 0.6931 -5.0572 -1.2416 14 7 1.5091 -4.9365 -0.0266 15 6 2.4255 -6.0768 0.1073 16 6 3.4527 -6.0416 -1.0262 17 6 4.4075 -7.2288 -0.8863 18 6 5.4350 -7.1932 -2.0193 19 1 4.9236 -7.1519 -2.9810 20 6 6.3307 -8.4489 -1.9538 21 6 7.7284 -7.8760 -2.3147 22 6 7.6430 -6.4673 -1.6749 23 8 6.2830 -6.0483 -1.8705 24 6 2.2440 -3.6654 -0.0047 25 1 -0.4851 0.8400 0.0004 26 1 0.9923 -2.4829 -2.1398 27 1 -0.3663 -1.7787 -1.2296 28 1 -0.9972 -4.0161 -0.4030 29 1 -0.9413 -4.0147 -2.1828 30 1 0.1855 -6.0218 -1.2438 31 1 1.3351 -4.9828 -2.1193 32 1 2.9405 -6.0184 1.0662 33 1 1.8588 -7.0066 0.0552 34 1 2.9377 -6.1000 -1.9850 35 1 4.0193 -5.1119 -0.9742 36 1 4.9224 -7.1699 0.0726 37 1 3.8411 -8.1587 -0.9380 38 1 6.3325 -8.8720 -0.9493 39 1 6.0140 -9.1901 -2.6876 40 1 7.8588 -7.8096 -3.3948 41 1 8.5246 -8.4659 -1.8609 42 1 8.3260 -5.7818 -2.1768 43 1 7.8738 -6.5188 -0.6109 44 1 2.8629 -3.6192 0.8914 45 1 2.8786 -3.5975 -0.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397600358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:43 Heat of formation + Delta-G solvation = -87.211434 kcal Electronic energy + Delta-G solvation = -21128.982388 eV Core-core repulsion = 18144.330031 eV Total energy + Delta-G solvation = -2984.652357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56667 -39.91311 -36.33785 -34.63050 -33.19065 -32.75607 -31.67523 -29.62969 -26.94852 -26.50631 -24.40717 -23.20811 -22.70605 -22.00040 -21.71444 -19.91637 -18.43626 -17.90786 -17.00849 -16.77117 -16.22034 -15.98681 -15.52762 -15.32722 -15.14376 -14.75347 -14.45585 -14.28825 -13.95973 -13.78159 -13.50704 -13.25050 -12.86887 -12.76712 -12.67346 -12.56707 -12.45967 -12.38407 -12.04511 -11.88486 -11.73454 -11.70815 -11.64618 -11.33816 -11.29425 -10.83917 -10.66061 -10.46632 -10.37633 -9.01698 -8.08135 -6.22507 1.40021 1.41931 1.49650 2.42606 2.95947 3.18099 3.20727 3.61879 3.71002 3.98101 4.03467 4.17126 4.22355 4.26505 4.33494 4.34119 4.38600 4.49434 4.62520 4.67119 4.73807 4.79393 4.82830 4.85600 4.89770 4.92587 4.94578 5.00112 5.03357 5.06165 5.13812 5.18977 5.21346 5.36530 5.42852 5.44178 5.53479 5.62931 5.97442 6.13345 6.18184 6.22078 6.42448 6.47600 6.89590 7.45018 8.96406 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.004368 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.605920 B = 6409.140714 C = 7472.422032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.047 0.953 9 C 0.052 3.948 10 H -0.004 1.004 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.066 3.934 14 N -0.549 5.549 15 C 0.058 3.942 16 C -0.146 4.146 17 C -0.115 4.115 18 C 0.070 3.930 19 H 0.071 0.929 20 C -0.144 4.144 21 C -0.150 4.150 22 C 0.037 3.963 23 O -0.411 6.411 24 C 0.085 3.915 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.241 -19.424 -4.704 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.065 0.935 9 C 0.033 3.967 10 H 0.014 0.986 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.062 4.062 14 N -0.272 5.272 15 C -0.070 4.070 16 C -0.185 4.185 17 C -0.153 4.153 18 C 0.013 3.987 19 H 0.089 0.911 20 C -0.182 4.182 21 C -0.187 4.187 22 C -0.039 4.039 23 O -0.332 6.332 24 C -0.043 4.043 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.120 0.880 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 10.682 -19.098 -4.293 22.299 hybrid contribution 0.904 1.335 -0.581 1.714 sum 11.587 -17.763 -4.875 21.760 Atomic orbital electron populations 1.70025 1.07128 1.27165 1.51103 1.25713 0.95696 1.02279 0.94686 0.85681 0.78474 0.79132 0.78784 1.19808 1.20568 1.19647 1.21489 0.92828 0.92389 1.51054 0.93483 1.18624 0.93016 0.91362 0.93727 0.98626 1.21448 0.99022 0.96498 0.97171 1.21605 0.97618 0.94855 1.00910 1.22028 0.94833 0.99038 0.90273 1.62158 1.24383 1.02353 1.38345 1.22283 0.92898 0.93817 0.97965 1.22087 0.97804 0.99067 0.99545 1.21857 0.96381 0.98498 0.98539 1.22945 0.91869 0.85559 0.98346 0.91058 1.23182 0.94088 0.96968 1.03953 1.23254 0.98170 0.95335 1.01956 1.23566 0.83305 0.96678 1.00341 1.88484 1.18845 1.32071 1.93759 1.21923 0.95186 0.89198 0.97967 0.92991 0.96286 0.92334 0.93047 0.91182 0.89139 0.95624 0.91415 0.88978 0.92588 0.94180 0.91781 0.88701 0.89460 0.88415 0.90172 0.87985 0.89692 0.92122 0.93431 0.96705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.94 11.35 21.45 0.24 -54.70 16 2 C 0.02 0.87 5.30 84.66 0.45 1.32 16 3 Si 0.95 45.41 29.54 68.60 2.03 47.44 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.64 8.57 25.60 0.22 -31.42 16 8 H 0.05 2.73 7.75 -2.91 -0.02 2.71 16 9 C 0.05 2.79 2.27 -11.44 -0.03 2.76 16 10 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 11 C -0.10 -5.22 5.02 30.68 0.15 -5.07 16 12 C -0.11 -4.51 6.09 30.65 0.19 -4.32 16 13 C 0.07 2.30 5.05 86.33 0.44 2.74 16 14 N -0.55 -20.85 4.86 -896.07 -4.35 -25.20 16 15 C 0.06 1.70 5.36 86.31 0.46 2.16 16 16 C -0.15 -4.14 4.43 30.59 0.14 -4.00 16 17 C -0.11 -2.41 4.78 30.59 0.15 -2.27 16 18 C 0.07 1.47 3.52 31.06 0.11 1.58 16 19 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 20 C -0.14 -1.96 6.54 31.86 0.21 -1.75 16 21 C -0.15 -1.96 7.16 32.06 0.23 -1.73 16 22 C 0.04 0.71 7.78 72.65 0.57 1.28 16 23 O -0.41 -11.23 10.63 -148.98 -1.58 -12.81 16 24 C 0.08 3.90 4.07 86.37 0.35 4.25 16 25 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 26 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 3.31 6.15 -2.39 -0.01 3.30 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.09 2.57 8.06 -2.38 -0.02 2.55 16 31 H 0.03 0.90 6.75 -2.39 -0.02 0.89 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 2.20 8.06 -2.38 -0.02 2.18 16 34 H 0.06 1.60 6.68 -2.39 -0.02 1.59 16 35 H 0.04 1.42 6.25 -2.39 -0.01 1.41 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.09 1.04 7.85 -2.39 -0.02 1.02 16 39 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.05 2.21 8.12 -2.39 -0.02 2.19 16 45 H 0.01 0.70 6.61 -2.39 -0.02 0.69 16 Total: -1.00 -67.09 340.07 0.88 -66.21 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.92 Total: 13.52 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 3.63 Total: -34.45 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -4.11 Total: -79.90 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.58 Total: -12.81 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -67.09 0.88 -66.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397600358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.001 kcal (2) G-P(sol) polarization free energy of solvation -67.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds