Wall clock time and date at job start Mon Mar 30 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50563 * 60.00269 * 9 7 2 11 11 C 1.53113 * 109.50657 * 299.91975 * 9 7 2 12 12 C 1.53116 * 109.16266 * 182.40574 * 11 9 7 13 13 C 1.53046 * 109.27650 * 57.65608 * 12 11 9 14 14 N 1.46848 * 109.52298 * 300.81995 * 13 12 11 15 15 C 1.46897 * 110.99921 * 185.84252 * 14 13 12 16 16 C 1.52999 * 109.47240 * 66.04374 * 15 14 13 17 17 H 1.08994 * 109.47504 * 305.00173 * 16 15 14 18 18 C 1.53000 * 109.46928 * 65.00036 * 16 15 14 19 19 C 1.53001 * 109.47258 * 179.97438 * 18 16 15 20 20 C 1.53007 * 109.46905 * 300.00265 * 19 18 16 21 21 C 1.52997 * 109.47024 * 59.99751 * 20 19 18 22 22 C 1.52997 * 109.46928 * 184.99707 * 16 15 14 23 23 H 1.09005 * 109.47208 * 60.00538 * 22 16 15 24 24 O 1.42901 * 109.47693 * 300.00289 * 22 16 15 25 25 C 1.46852 * 111.22940 * 61.72176 * 14 13 12 26 26 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.52595 * 302.31175 * 11 9 7 28 28 H 1.09001 * 109.52174 * 62.43511 * 11 9 7 29 29 H 1.08998 * 109.50591 * 177.59379 * 12 11 9 30 30 H 1.08997 * 109.50378 * 297.67891 * 12 11 9 31 31 H 1.09003 * 109.46099 * 60.83816 * 13 12 11 32 32 H 1.09000 * 109.45880 * 180.80520 * 13 12 11 33 33 H 1.08999 * 109.46656 * 186.04768 * 15 14 13 34 34 H 1.09004 * 109.46660 * 306.04214 * 15 14 13 35 35 H 1.09000 * 109.47473 * 299.99777 * 18 16 15 36 36 H 1.09001 * 109.47272 * 59.99832 * 18 16 15 37 37 H 1.09001 * 109.46971 * 59.99826 * 19 18 16 38 38 H 1.08993 * 109.47459 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.46649 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.46948 * 299.99575 * 20 19 18 41 41 H 1.09001 * 109.47401 * 60.00102 * 21 20 19 42 42 H 1.09010 * 109.47091 * 179.97438 * 21 20 19 43 43 H 0.96699 * 114.00022 * 179.97438 * 24 22 16 44 44 H 1.09004 * 109.49283 * 178.28258 * 25 14 13 45 45 H 1.08996 * 109.42705 * 58.31464 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6246 -2.5577 -0.8895 11 6 0.3715 -2.5817 1.2511 12 6 -0.3442 -3.9351 1.2738 13 6 0.6960 -5.0573 1.2405 14 7 1.5113 -4.9348 0.0253 15 6 2.4286 -6.0741 -0.1102 16 6 1.6221 -7.3537 -0.3403 17 1 0.8949 -7.4743 0.4626 18 6 0.8906 -7.2613 -1.6810 19 6 0.0846 -8.5412 -1.9115 20 6 1.0306 -9.7436 -1.9284 21 6 1.7620 -9.8359 -0.5877 22 6 2.5676 -8.5564 -0.3571 23 1 3.0887 -8.6223 0.5981 24 8 3.5209 -8.3984 -1.4098 25 6 2.2449 -3.6629 0.0031 26 1 -0.4850 0.8401 0.0004 27 1 0.9933 -2.4835 2.1410 28 1 -0.3657 -1.7790 1.2316 29 1 -0.9389 -4.0171 2.1836 30 1 -0.9962 -4.0166 0.4042 31 1 1.3384 -4.9831 2.1180 32 1 0.1892 -6.0223 1.2422 33 1 3.0935 -5.9063 -0.9574 34 1 3.0189 -6.1755 0.8006 35 1 0.2170 -6.4045 -1.6691 36 1 1.6178 -7.1407 -2.4840 37 1 -0.6425 -8.6622 -1.1085 38 1 -0.4361 -8.4756 -2.8668 39 1 0.4563 -10.6554 -2.0922 40 1 1.7577 -9.6226 -2.7314 41 1 1.0349 -9.9570 0.2153 42 1 2.4357 -10.6929 -0.5996 43 1 4.1542 -9.1258 -1.4795 44 1 2.8627 -3.6149 -0.8936 45 1 2.8806 -3.5956 0.8860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397606772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:53 Heat of formation + Delta-G solvation = -79.146103 kcal Electronic energy + Delta-G solvation = -21689.308449 eV Core-core repulsion = 18705.005832 eV Total energy + Delta-G solvation = -2984.302618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.57298 -37.82573 -35.06672 -33.92424 -32.13198 -30.41332 -29.86980 -29.54631 -25.27786 -24.89787 -22.69995 -22.12710 -21.58295 -20.49166 -19.40895 -18.50491 -16.87719 -16.32899 -15.61920 -15.26204 -14.74464 -14.35879 -14.11709 -14.11076 -13.65056 -13.21671 -12.85070 -12.73322 -12.56688 -12.38506 -12.09523 -11.84536 -11.71454 -11.45554 -11.26200 -10.93160 -10.84031 -10.65521 -10.60933 -10.48060 -10.31784 -9.96694 -9.90521 -9.78518 -9.67592 -9.39160 -8.91960 -8.63165 -8.25129 -7.53048 -5.92632 -3.98336 3.33015 3.40923 3.44985 4.23255 4.39824 4.54041 4.70376 4.82836 4.88069 5.17060 5.30221 5.37313 5.39567 5.45502 5.55300 5.57338 5.67666 5.77991 5.79457 5.91599 5.96096 6.04325 6.09873 6.18167 6.20037 6.29624 6.37302 6.40221 6.50404 6.60774 6.62822 6.76231 6.78877 6.82579 7.05329 7.28995 7.47727 7.63323 7.77171 7.81933 7.93908 8.15666 8.23740 8.54767 9.06120 9.65700 11.13349 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034566 B = 0.004207 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.847450 B = 6653.228548 C = 6906.392765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.061 3.939 14 N -0.535 5.535 15 C 0.065 3.935 16 C -0.073 4.073 17 H 0.078 0.922 18 C -0.101 4.101 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.150 4.150 22 C 0.109 3.891 23 H 0.048 0.952 24 O -0.556 6.556 25 C 0.069 3.931 26 H 0.258 0.742 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.019 0.981 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.019 0.981 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.369 0.631 44 H 0.058 0.942 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 -19.125 -0.179 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.067 4.067 14 N -0.260 5.260 15 C -0.064 4.064 16 C -0.092 4.092 17 H 0.096 0.904 18 C -0.139 4.139 19 C -0.158 4.158 20 C -0.151 4.151 21 C -0.188 4.188 22 C 0.050 3.950 23 H 0.066 0.934 24 O -0.361 6.361 25 C -0.058 4.058 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.038 0.962 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.215 0.785 44 H 0.076 0.924 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 1.285 -18.434 -0.671 18.490 hybrid contribution 1.343 0.316 0.964 1.683 sum 2.628 -18.118 0.293 18.310 Atomic orbital electron populations 1.69906 1.05821 1.26105 1.50942 1.24933 0.94812 0.98901 0.95213 0.86587 0.80156 0.84043 0.77495 1.19880 1.21059 1.21149 1.21211 0.92864 0.90744 1.50339 0.92851 1.18659 0.92635 0.90316 0.94790 0.94807 1.21641 1.00000 0.94722 0.98450 1.21665 0.97191 0.96562 1.00022 1.22064 0.95740 0.98559 0.90339 1.61955 1.24243 1.02291 1.37486 1.22017 0.94064 0.90340 0.99932 1.21195 0.96088 0.92718 0.99174 0.90424 1.21377 0.99045 0.97045 0.96397 1.21574 0.97754 0.95235 1.01250 1.21438 0.98559 0.97917 0.97222 1.22219 0.99967 0.97669 0.98907 1.21818 0.89235 0.94646 0.89310 0.93376 1.86593 1.45938 1.48803 1.54758 1.22282 0.96332 0.88554 0.98607 0.93187 0.95304 0.89189 0.93762 0.92147 0.96236 0.92411 0.90486 0.96248 0.90441 0.91602 0.92554 0.92271 0.92788 0.91486 0.91324 0.92217 0.78481 0.92363 0.96579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 11.35 55.43 0.63 -25.06 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.34 8.56 -34.44 -0.29 -14.64 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.40 2.26 -91.70 -0.21 1.19 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 12 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 13 C 0.06 1.09 5.30 -3.83 -0.02 1.07 16 14 N -0.54 -10.12 4.11 -234.66 -0.96 -11.08 16 15 C 0.06 1.04 4.13 -3.83 -0.02 1.03 16 16 C -0.07 -0.97 1.95 -90.62 -0.18 -1.14 16 17 H 0.08 1.02 6.23 -51.93 -0.32 0.70 16 18 C -0.10 -1.38 4.95 -26.73 -0.13 -1.51 16 19 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 20 C -0.11 -1.10 5.78 -26.73 -0.15 -1.26 16 21 C -0.15 -1.35 5.63 -26.76 -0.15 -1.50 16 22 C 0.11 1.18 3.21 -26.76 -0.09 1.10 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 O -0.56 -6.17 11.39 -35.23 -0.40 -6.57 16 25 C 0.07 1.53 4.68 -3.83 -0.02 1.51 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.91 6.13 -51.93 -0.32 0.59 16 33 H 0.08 1.32 7.68 -51.93 -0.40 0.92 16 34 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 35 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 36 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.69 7.68 -51.93 -0.40 0.29 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.37 2.53 9.08 45.56 0.41 2.94 16 44 H 0.06 1.29 8.01 -51.93 -0.42 0.87 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -29.24 334.79 -10.12 -39.36 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.60 Total: 1.06 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -1.81 Total: -19.28 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.33 Total: -36.14 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.40 Total: -6.57 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.24 -10.12 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397606772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.791 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds