Wall clock time and date at job start Mon Mar 30 2020 06:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50563 * 60.00269 * 9 7 2 11 11 C 1.53113 * 109.50657 * 299.91975 * 9 7 2 12 12 C 1.53116 * 109.16266 * 182.40574 * 11 9 7 13 13 C 1.53046 * 109.27650 * 57.65608 * 12 11 9 14 14 N 1.46848 * 109.52298 * 300.81995 * 13 12 11 15 15 C 1.46897 * 110.99921 * 185.84252 * 14 13 12 16 16 C 1.52999 * 109.47240 * 66.04374 * 15 14 13 17 17 H 1.08994 * 109.47504 * 305.00173 * 16 15 14 18 18 C 1.53000 * 109.46928 * 65.00036 * 16 15 14 19 19 C 1.53001 * 109.47258 * 179.97438 * 18 16 15 20 20 C 1.53007 * 109.46905 * 300.00265 * 19 18 16 21 21 C 1.52997 * 109.47024 * 59.99751 * 20 19 18 22 22 C 1.52997 * 109.46928 * 184.99707 * 16 15 14 23 23 H 1.09005 * 109.47208 * 60.00538 * 22 16 15 24 24 O 1.42901 * 109.47693 * 300.00289 * 22 16 15 25 25 C 1.46852 * 111.22940 * 61.72176 * 14 13 12 26 26 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.52595 * 302.31175 * 11 9 7 28 28 H 1.09001 * 109.52174 * 62.43511 * 11 9 7 29 29 H 1.08998 * 109.50591 * 177.59379 * 12 11 9 30 30 H 1.08997 * 109.50378 * 297.67891 * 12 11 9 31 31 H 1.09003 * 109.46099 * 60.83816 * 13 12 11 32 32 H 1.09000 * 109.45880 * 180.80520 * 13 12 11 33 33 H 1.08999 * 109.46656 * 186.04768 * 15 14 13 34 34 H 1.09004 * 109.46660 * 306.04214 * 15 14 13 35 35 H 1.09000 * 109.47473 * 299.99777 * 18 16 15 36 36 H 1.09001 * 109.47272 * 59.99832 * 18 16 15 37 37 H 1.09001 * 109.46971 * 59.99826 * 19 18 16 38 38 H 1.08993 * 109.47459 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.46649 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.46948 * 299.99575 * 20 19 18 41 41 H 1.09001 * 109.47401 * 60.00102 * 21 20 19 42 42 H 1.09010 * 109.47091 * 179.97438 * 21 20 19 43 43 H 0.96699 * 114.00022 * 179.97438 * 24 22 16 44 44 H 1.09004 * 109.49283 * 178.28258 * 25 14 13 45 45 H 1.08996 * 109.42705 * 58.31464 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6246 -2.5577 -0.8895 11 6 0.3715 -2.5817 1.2511 12 6 -0.3442 -3.9351 1.2738 13 6 0.6960 -5.0573 1.2405 14 7 1.5113 -4.9348 0.0253 15 6 2.4286 -6.0741 -0.1102 16 6 1.6221 -7.3537 -0.3403 17 1 0.8949 -7.4743 0.4626 18 6 0.8906 -7.2613 -1.6810 19 6 0.0846 -8.5412 -1.9115 20 6 1.0306 -9.7436 -1.9284 21 6 1.7620 -9.8359 -0.5877 22 6 2.5676 -8.5564 -0.3571 23 1 3.0887 -8.6223 0.5981 24 8 3.5209 -8.3984 -1.4098 25 6 2.2449 -3.6629 0.0031 26 1 -0.4850 0.8401 0.0004 27 1 0.9933 -2.4835 2.1410 28 1 -0.3657 -1.7790 1.2316 29 1 -0.9389 -4.0171 2.1836 30 1 -0.9962 -4.0166 0.4042 31 1 1.3384 -4.9831 2.1180 32 1 0.1892 -6.0223 1.2422 33 1 3.0935 -5.9063 -0.9574 34 1 3.0189 -6.1755 0.8006 35 1 0.2170 -6.4045 -1.6691 36 1 1.6178 -7.1407 -2.4840 37 1 -0.6425 -8.6622 -1.1085 38 1 -0.4361 -8.4756 -2.8668 39 1 0.4563 -10.6554 -2.0922 40 1 1.7577 -9.6226 -2.7314 41 1 1.0349 -9.9570 0.2153 42 1 2.4357 -10.6929 -0.5996 43 1 4.1542 -9.1258 -1.4795 44 1 2.8627 -3.6149 -0.8936 45 1 2.8806 -3.5956 0.8860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397606772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:52 Heat of formation + Delta-G solvation = -97.612171 kcal Electronic energy + Delta-G solvation = -21690.109198 eV Core-core repulsion = 18705.005832 eV Total energy + Delta-G solvation = -2985.103367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65385 -39.29740 -36.08968 -35.53212 -33.85343 -31.89231 -31.31677 -30.67223 -26.93420 -26.59586 -23.91071 -23.32360 -23.24295 -21.64422 -20.49513 -20.27673 -18.41605 -17.68593 -16.86079 -16.60260 -16.31956 -15.80186 -15.35781 -15.19604 -14.97715 -14.86756 -14.36546 -14.18753 -14.03284 -13.66986 -13.35475 -13.18867 -12.87311 -12.86930 -12.68666 -12.62140 -12.47369 -12.22883 -11.90143 -11.74719 -11.66421 -11.50381 -11.38295 -11.29990 -10.96102 -10.67085 -10.65237 -10.48957 -10.36171 -9.07514 -8.08263 -6.22565 1.39611 1.40962 1.52731 2.42500 3.08872 3.18409 3.45890 3.83021 3.92310 3.98167 4.16697 4.20938 4.29821 4.33732 4.42570 4.51623 4.56175 4.59690 4.65122 4.68898 4.74491 4.79508 4.86811 4.92004 4.98055 5.03655 5.09740 5.16367 5.16949 5.19638 5.32697 5.37000 5.40959 5.44371 5.51988 5.58917 5.63544 5.69342 5.97607 6.13794 6.22366 6.40958 6.47495 6.89995 7.03910 7.45222 8.96551 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034566 B = 0.004207 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.847450 B = 6653.228548 C = 6906.392765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.049 0.951 9 C 0.054 3.946 10 H -0.005 1.005 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.065 3.935 14 N -0.543 5.543 15 C 0.069 3.931 16 C -0.069 4.069 17 H 0.085 0.915 18 C -0.097 4.097 19 C -0.118 4.118 20 C -0.111 4.111 21 C -0.144 4.144 22 C 0.112 3.888 23 H 0.059 0.941 24 O -0.577 6.577 25 C 0.083 3.917 26 H 0.260 0.740 27 H 0.021 0.979 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.023 0.977 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.025 0.975 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.388 0.612 44 H 0.049 0.951 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -21.237 0.683 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.067 0.933 9 C 0.035 3.965 10 H 0.013 0.987 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.062 4.062 14 N -0.268 5.268 15 C -0.058 4.058 16 C -0.088 4.088 17 H 0.104 0.896 18 C -0.134 4.134 19 C -0.156 4.156 20 C -0.149 4.149 21 C -0.181 4.181 22 C 0.052 3.948 23 H 0.077 0.923 24 O -0.384 6.384 25 C -0.044 4.044 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.237 0.763 44 H 0.067 0.933 45 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 1.755 -20.575 0.189 20.651 hybrid contribution 1.198 0.984 0.647 1.679 sum 2.953 -19.592 0.836 19.830 Atomic orbital electron populations 1.70044 1.07152 1.27004 1.51231 1.25720 0.95680 1.02303 0.94712 0.85556 0.79003 0.79699 0.77686 1.19305 1.20539 1.20424 1.21557 0.92910 0.92308 1.50842 0.93299 1.18571 0.92932 0.91206 0.93781 0.98683 1.21448 0.99051 0.96423 0.97199 1.21577 0.97512 0.94771 1.00872 1.22071 0.95145 0.99159 0.89834 1.61899 1.24691 1.01789 1.38372 1.22028 0.93896 0.90460 0.99450 1.21181 0.96456 0.92318 0.98853 0.89649 1.21271 0.98361 0.97502 0.96288 1.21551 0.97906 0.94592 1.01520 1.21418 0.98230 0.97627 0.97605 1.22184 1.00187 0.97269 0.98492 1.21765 0.89106 0.94107 0.89779 0.92318 1.86554 1.46639 1.50314 1.54915 1.21943 0.95299 0.89292 0.97915 0.93043 0.96005 0.92354 0.91153 0.93154 0.95894 0.89129 0.92075 0.95685 0.93255 0.93471 0.91817 0.92331 0.91106 0.92256 0.90529 0.89945 0.76294 0.93265 0.97035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.35 11.35 21.45 0.24 -54.11 16 2 C 0.01 0.83 5.30 84.66 0.45 1.28 16 3 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.54 -31.01 8.56 25.60 0.22 -30.79 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.05 2.87 2.26 -11.49 -0.03 2.85 16 10 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 11 C -0.10 -5.11 5.03 30.67 0.15 -4.95 16 12 C -0.11 -4.31 6.09 30.65 0.19 -4.13 16 13 C 0.07 2.25 5.30 86.33 0.46 2.71 16 14 N -0.54 -20.51 4.11 -896.33 -3.68 -24.19 16 15 C 0.07 2.18 4.13 86.30 0.36 2.53 16 16 C -0.07 -1.72 1.95 -10.79 -0.02 -1.74 16 17 H 0.09 1.99 6.23 -2.39 -0.01 1.97 16 18 C -0.10 -2.59 4.95 30.59 0.15 -2.44 16 19 C -0.12 -2.44 5.92 30.60 0.18 -2.26 16 20 C -0.11 -1.84 5.78 30.60 0.18 -1.66 16 21 C -0.14 -2.05 5.63 30.58 0.17 -1.88 16 22 C 0.11 2.11 3.21 30.58 0.10 2.21 16 23 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 24 O -0.58 -11.67 11.39 -148.98 -1.70 -13.36 16 25 C 0.08 3.77 4.68 86.33 0.40 4.18 16 26 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 3.25 6.15 -2.39 -0.01 3.24 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 2.57 6.13 -2.39 -0.01 2.55 16 33 H 0.06 2.11 7.68 -2.39 -0.02 2.09 16 34 H 0.02 0.76 8.12 -2.38 -0.02 0.74 16 35 H 0.05 1.58 7.75 -2.39 -0.02 1.56 16 36 H 0.05 1.42 7.68 -2.39 -0.02 1.40 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.08 7.68 -2.39 -0.02 1.07 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.39 4.35 9.08 -74.06 -0.67 3.68 16 44 H 0.05 2.27 8.01 -2.38 -0.02 2.25 16 45 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -64.98 334.79 0.12 -64.86 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.27 Total: 14.05 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 2.96 Total: -34.10 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -3.44 Total: -78.30 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -1.70 Total: -13.36 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.98 0.12 -64.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397606772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.755 kcal (2) G-P(sol) polarization free energy of solvation -64.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds