Wall clock time and date at job start Mon Mar 30 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99981 * 2 1 4 4 H 1.48498 * 109.47276 * 85.10175 * 3 2 1 5 5 H 1.48507 * 109.46903 * 205.09772 * 3 2 1 6 6 H 1.48497 * 109.47565 * 325.09796 * 3 2 1 7 7 C 1.37883 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99978 * 172.28845 * 7 2 1 9 9 C 1.50695 * 119.99837 * 352.28858 * 7 2 1 10 10 H 1.08999 * 109.50621 * 55.83324 * 9 7 2 11 11 C 1.53119 * 109.50500 * 295.75153 * 9 7 2 12 12 C 1.53118 * 109.16242 * 182.40926 * 11 9 7 13 13 C 1.53037 * 109.28236 * 57.65181 * 12 11 9 14 14 N 1.46854 * 109.52133 * 300.82208 * 13 12 11 15 15 C 1.46896 * 110.99777 * 185.83556 * 14 13 12 16 16 C 1.53003 * 109.47007 * 75.75284 * 15 14 13 17 17 H 1.09003 * 109.47218 * 302.81560 * 16 15 14 18 18 C 1.53001 * 109.47184 * 182.81701 * 16 15 14 19 19 C 1.53003 * 109.47184 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47059 * 59.99761 * 19 18 16 21 21 C 1.53001 * 109.47318 * 300.00157 * 20 19 18 22 22 C 1.52999 * 109.47059 * 62.81462 * 16 15 14 23 23 H 1.08995 * 109.47381 * 300.00137 * 22 16 15 24 24 O 1.42902 * 109.46912 * 60.00474 * 22 16 15 25 25 C 1.46854 * 111.19539 * 61.74120 * 14 13 12 26 26 H 0.97000 * 119.99753 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.52212 * 302.30830 * 11 9 7 28 28 H 1.08996 * 109.52144 * 62.43433 * 11 9 7 29 29 H 1.09007 * 109.50386 * 177.59769 * 12 11 9 30 30 H 1.09009 * 109.50143 * 297.70889 * 12 11 9 31 31 H 1.08997 * 109.45990 * 60.83856 * 13 12 11 32 32 H 1.08996 * 109.46433 * 180.81015 * 13 12 11 33 33 H 1.09005 * 109.47322 * 195.74959 * 15 14 13 34 34 H 1.09004 * 109.47183 * 315.75319 * 15 14 13 35 35 H 1.09003 * 109.46928 * 300.00036 * 18 16 15 36 36 H 1.09002 * 109.46913 * 59.99846 * 18 16 15 37 37 H 1.09006 * 109.46882 * 300.00242 * 19 18 16 38 38 H 1.08995 * 109.47136 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.47543 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.47025 * 59.99980 * 20 19 18 41 41 H 1.08990 * 109.47198 * 299.99848 * 21 20 19 42 42 H 1.09000 * 109.46886 * 179.97438 * 21 20 19 43 43 H 0.96706 * 114.00269 * 180.02562 * 24 22 16 44 44 H 1.09001 * 109.45676 * 178.24094 * 25 14 13 45 45 H 1.09001 * 109.45814 * 58.27385 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3931 2.1062 1.3949 5 1 3.5947 1.4124 -0.5939 6 1 1.5023 2.6206 -0.8010 7 6 2.0045 -1.1941 -0.0005 8 1 3.0772 -1.1983 -0.1260 9 6 1.2613 -2.4933 0.1740 10 1 0.4855 -2.5740 -0.5874 11 6 0.6195 -2.5325 1.5637 12 6 -0.0825 -3.8797 1.7553 13 6 0.9332 -5.0095 1.5708 14 7 1.5180 -4.9289 0.2262 15 6 2.3946 -6.0780 -0.0363 16 6 1.5414 -7.3162 -0.3192 17 1 0.8765 -7.4998 0.5247 18 6 2.4530 -8.5279 -0.5233 19 6 1.5999 -9.7660 -0.8069 20 6 0.7689 -9.5342 -2.0705 21 6 -0.1427 -8.3225 -1.8664 22 6 0.7100 -7.0848 -1.5826 23 1 0.0606 -6.2216 -1.4372 24 8 1.5818 -6.8442 -2.6891 25 6 2.2379 -3.6633 0.0353 26 1 -0.4850 0.8401 -0.0004 27 1 1.3908 -2.4122 2.3245 28 1 -0.1080 -1.7257 1.6518 29 1 -0.5050 -3.9304 2.7589 30 1 -0.8794 -3.9828 1.0188 31 1 1.7224 -4.9138 2.3165 32 1 0.4335 -5.9705 1.6924 33 1 3.0238 -5.8651 -0.9007 34 1 3.0237 -6.2616 0.8347 35 1 3.1180 -8.3443 -1.3673 36 1 3.0453 -8.6927 0.3768 37 1 0.9346 -9.9497 0.0368 38 1 2.2492 -10.6293 -0.9518 39 1 0.1614 -10.4164 -2.2728 40 1 1.4342 -9.3504 -2.9142 41 1 -0.8079 -8.5063 -1.0228 42 1 -0.7343 -8.1572 -2.7668 43 1 1.1221 -6.6885 -3.5255 44 1 2.6859 -3.6466 -0.9583 45 1 3.0211 -3.5739 0.7882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397606775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:55 Heat of formation + Delta-G solvation = -81.560602 kcal Electronic energy + Delta-G solvation = -21800.315525 eV Core-core repulsion = 18815.908207 eV Total energy + Delta-G solvation = -2984.407318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.47384 -37.76843 -34.89180 -33.90521 -32.18437 -30.54703 -29.87401 -29.39979 -25.27459 -24.87908 -22.57585 -22.23503 -21.55279 -20.48232 -19.40528 -18.54890 -16.62208 -16.30041 -15.52481 -15.07075 -14.83829 -14.53900 -14.23394 -13.90388 -13.52614 -13.15200 -12.92637 -12.74514 -12.58866 -12.38840 -12.12972 -11.85531 -11.64263 -11.42889 -11.22713 -10.92424 -10.80128 -10.71300 -10.61183 -10.56748 -10.39093 -10.06564 -9.87789 -9.84654 -9.44353 -9.39562 -8.89619 -8.68443 -8.26158 -7.54637 -5.96167 -3.98131 3.33228 3.40434 3.43664 4.35302 4.48923 4.69453 4.75017 4.78757 4.97589 5.21807 5.30897 5.35997 5.45996 5.51248 5.52411 5.67062 5.74557 5.78101 5.82284 5.95078 5.98515 5.98898 6.06925 6.13928 6.16508 6.27793 6.33265 6.35120 6.44913 6.48344 6.59772 6.62920 6.73436 6.77480 7.01835 7.24110 7.39731 7.75034 7.80289 7.91712 7.93612 8.08106 8.17561 8.53458 9.06425 9.64934 11.12660 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032702 B = 0.004410 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.005690 B = 6347.580349 C = 6529.173373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.287 1.287 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.039 0.961 11 C -0.106 4.106 12 C -0.116 4.116 13 C 0.062 3.938 14 N -0.535 5.535 15 C 0.062 3.938 16 C -0.069 4.069 17 H 0.074 0.926 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.154 4.154 22 C 0.119 3.881 23 H 0.072 0.928 24 O -0.561 6.561 25 C 0.070 3.930 26 H 0.259 0.741 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.021 0.979 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.370 0.630 44 H 0.060 0.940 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 -17.457 -1.326 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.057 0.943 11 C -0.144 4.144 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.259 5.259 15 C -0.067 4.067 16 C -0.088 4.088 17 H 0.092 0.908 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.192 4.192 22 C 0.060 3.940 23 H 0.090 0.910 24 O -0.365 6.365 25 C -0.057 4.057 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.216 0.784 44 H 0.078 0.922 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 0.200 -17.420 -1.196 17.462 hybrid contribution 0.622 1.020 0.300 1.231 sum 0.822 -16.400 -0.896 16.445 Atomic orbital electron populations 1.69966 1.05856 1.26297 1.50479 1.24921 0.94748 0.98868 0.95138 0.86674 0.80067 0.83928 0.77889 1.20840 1.19937 1.21316 1.21153 0.93598 0.90977 1.49643 0.92891 1.18656 0.93861 0.90391 0.93512 0.94317 1.21590 0.99177 0.94502 0.99144 1.21653 0.97916 0.96415 0.99428 1.22049 0.97026 0.98415 0.89136 1.61935 1.34823 1.02439 1.26736 1.22049 0.94129 0.90631 0.99850 1.21122 0.97169 0.94415 0.96129 0.90757 1.21494 0.98020 0.93916 1.01575 1.21499 0.98440 0.97643 0.97803 1.21429 0.98196 0.97102 0.98415 1.22295 0.98419 0.96706 1.01791 1.21644 0.90750 0.95271 0.86347 0.91038 1.86470 1.36845 1.94047 1.19184 1.22287 0.95857 0.88548 0.98962 0.93148 0.95059 0.90680 0.93693 0.92106 0.96101 0.92556 0.90453 0.95873 0.91107 0.92625 0.92472 0.92432 0.92829 0.91482 0.91480 0.92117 0.78363 0.92179 0.96685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 12.01 55.43 0.67 -25.02 16 2 C 0.06 1.81 5.24 -17.82 -0.09 1.72 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -14.33 8.50 -34.44 -0.29 -14.62 16 8 H 0.05 1.46 7.76 -52.49 -0.41 1.06 16 9 C 0.05 1.38 2.14 -91.69 -0.20 1.19 16 10 H 0.04 1.09 8.13 -51.93 -0.42 0.67 16 11 C -0.11 -2.51 5.08 -26.61 -0.14 -2.65 16 12 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 13 C 0.06 1.09 5.29 -3.83 -0.02 1.07 16 14 N -0.54 -9.94 3.94 -234.66 -0.93 -10.87 16 15 C 0.06 0.98 4.31 -3.82 -0.02 0.97 16 16 C -0.07 -0.92 2.07 -90.62 -0.19 -1.11 16 17 H 0.07 0.98 6.76 -51.93 -0.35 0.63 16 18 C -0.11 -1.30 5.06 -26.73 -0.14 -1.44 16 19 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 20 C -0.11 -1.13 5.78 -26.73 -0.15 -1.28 16 21 C -0.15 -1.64 5.63 -26.76 -0.15 -1.79 16 22 C 0.12 1.55 3.08 -26.76 -0.08 1.47 16 23 H 0.07 1.10 7.69 -51.93 -0.40 0.70 16 24 O -0.56 -7.47 11.24 -35.23 -0.40 -7.86 16 25 C 0.07 1.54 4.65 -3.83 -0.02 1.52 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.98 6.80 -51.93 -0.35 1.62 16 29 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.87 6.67 -51.93 -0.35 0.52 16 33 H 0.08 1.32 7.25 -51.93 -0.38 0.94 16 34 H 0.02 0.36 8.00 -51.93 -0.42 -0.05 16 35 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.37 3.69 9.08 45.56 0.41 4.10 16 44 H 0.06 1.34 7.93 -51.93 -0.41 0.92 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -28.96 336.19 -10.07 -39.02 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.65 Total: 1.89 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.80 Total: -18.70 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.26 Total: -35.89 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.40 Total: -7.86 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.96 -10.07 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397606775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.538 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds