Wall clock time and date at job start Mon Mar 30 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99981 * 2 1 4 4 H 1.48498 * 109.47276 * 85.10175 * 3 2 1 5 5 H 1.48507 * 109.46903 * 205.09772 * 3 2 1 6 6 H 1.48497 * 109.47565 * 325.09796 * 3 2 1 7 7 C 1.37883 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99978 * 172.28845 * 7 2 1 9 9 C 1.50695 * 119.99837 * 352.28858 * 7 2 1 10 10 H 1.08999 * 109.50621 * 55.83324 * 9 7 2 11 11 C 1.53119 * 109.50500 * 295.75153 * 9 7 2 12 12 C 1.53118 * 109.16242 * 182.40926 * 11 9 7 13 13 C 1.53037 * 109.28236 * 57.65181 * 12 11 9 14 14 N 1.46854 * 109.52133 * 300.82208 * 13 12 11 15 15 C 1.46896 * 110.99777 * 185.83556 * 14 13 12 16 16 C 1.53003 * 109.47007 * 75.75284 * 15 14 13 17 17 H 1.09003 * 109.47218 * 302.81560 * 16 15 14 18 18 C 1.53001 * 109.47184 * 182.81701 * 16 15 14 19 19 C 1.53003 * 109.47184 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47059 * 59.99761 * 19 18 16 21 21 C 1.53001 * 109.47318 * 300.00157 * 20 19 18 22 22 C 1.52999 * 109.47059 * 62.81462 * 16 15 14 23 23 H 1.08995 * 109.47381 * 300.00137 * 22 16 15 24 24 O 1.42902 * 109.46912 * 60.00474 * 22 16 15 25 25 C 1.46854 * 111.19539 * 61.74120 * 14 13 12 26 26 H 0.97000 * 119.99753 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.52212 * 302.30830 * 11 9 7 28 28 H 1.08996 * 109.52144 * 62.43433 * 11 9 7 29 29 H 1.09007 * 109.50386 * 177.59769 * 12 11 9 30 30 H 1.09009 * 109.50143 * 297.70889 * 12 11 9 31 31 H 1.08997 * 109.45990 * 60.83856 * 13 12 11 32 32 H 1.08996 * 109.46433 * 180.81015 * 13 12 11 33 33 H 1.09005 * 109.47322 * 195.74959 * 15 14 13 34 34 H 1.09004 * 109.47183 * 315.75319 * 15 14 13 35 35 H 1.09003 * 109.46928 * 300.00036 * 18 16 15 36 36 H 1.09002 * 109.46913 * 59.99846 * 18 16 15 37 37 H 1.09006 * 109.46882 * 300.00242 * 19 18 16 38 38 H 1.08995 * 109.47136 * 180.02562 * 19 18 16 39 39 H 1.08999 * 109.47543 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.47025 * 59.99980 * 20 19 18 41 41 H 1.08990 * 109.47198 * 299.99848 * 21 20 19 42 42 H 1.09000 * 109.46886 * 179.97438 * 21 20 19 43 43 H 0.96706 * 114.00269 * 180.02562 * 24 22 16 44 44 H 1.09001 * 109.45676 * 178.24094 * 25 14 13 45 45 H 1.09001 * 109.45814 * 58.27385 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3931 2.1062 1.3949 5 1 3.5947 1.4124 -0.5939 6 1 1.5023 2.6206 -0.8010 7 6 2.0045 -1.1941 -0.0005 8 1 3.0772 -1.1983 -0.1260 9 6 1.2613 -2.4933 0.1740 10 1 0.4855 -2.5740 -0.5874 11 6 0.6195 -2.5325 1.5637 12 6 -0.0825 -3.8797 1.7553 13 6 0.9332 -5.0095 1.5708 14 7 1.5180 -4.9289 0.2262 15 6 2.3946 -6.0780 -0.0363 16 6 1.5414 -7.3162 -0.3192 17 1 0.8765 -7.4998 0.5247 18 6 2.4530 -8.5279 -0.5233 19 6 1.5999 -9.7660 -0.8069 20 6 0.7689 -9.5342 -2.0705 21 6 -0.1427 -8.3225 -1.8664 22 6 0.7100 -7.0848 -1.5826 23 1 0.0606 -6.2216 -1.4372 24 8 1.5818 -6.8442 -2.6891 25 6 2.2379 -3.6633 0.0353 26 1 -0.4850 0.8401 -0.0004 27 1 1.3908 -2.4122 2.3245 28 1 -0.1080 -1.7257 1.6518 29 1 -0.5050 -3.9304 2.7589 30 1 -0.8794 -3.9828 1.0188 31 1 1.7224 -4.9138 2.3165 32 1 0.4335 -5.9705 1.6924 33 1 3.0238 -5.8651 -0.9007 34 1 3.0237 -6.2616 0.8347 35 1 3.1180 -8.3443 -1.3673 36 1 3.0453 -8.6927 0.3768 37 1 0.9346 -9.9497 0.0368 38 1 2.2492 -10.6293 -0.9518 39 1 0.1614 -10.4164 -2.2728 40 1 1.4342 -9.3504 -2.9142 41 1 -0.8079 -8.5063 -1.0228 42 1 -0.7343 -8.1572 -2.7668 43 1 1.1221 -6.6885 -3.5255 44 1 2.6859 -3.6466 -0.9583 45 1 3.0211 -3.5739 0.7882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397606775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:55 Heat of formation + Delta-G solvation = -99.477959 kcal Electronic energy + Delta-G solvation = -21801.092480 eV Core-core repulsion = 18815.908207 eV Total energy + Delta-G solvation = -2985.184273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61009 -39.25286 -35.95886 -35.56246 -33.89401 -31.87465 -31.52480 -30.49214 -26.91190 -26.58227 -23.80955 -23.36581 -23.26153 -21.64187 -20.44832 -20.33873 -18.40984 -17.60818 -16.82889 -16.42380 -16.27041 -16.04835 -15.46161 -15.13695 -14.97199 -14.69339 -14.38998 -14.21508 -13.85993 -13.68808 -13.58042 -13.19963 -12.95381 -12.82608 -12.65328 -12.52961 -12.40623 -12.22720 -11.93683 -11.76482 -11.68834 -11.59528 -11.39860 -11.32997 -10.79678 -10.76795 -10.66812 -10.41382 -10.36221 -9.06389 -8.11814 -6.21555 1.39855 1.40776 1.51289 2.42570 3.08467 3.17933 3.59076 3.78452 3.90047 4.07483 4.19591 4.21233 4.26778 4.33551 4.45012 4.53393 4.57888 4.61978 4.65160 4.71006 4.79308 4.82166 4.86382 4.90820 4.95059 5.04854 5.08663 5.13385 5.17567 5.20684 5.33246 5.36662 5.39879 5.42385 5.46373 5.52955 5.63239 5.66213 5.96381 6.07317 6.19742 6.41304 6.48624 6.91132 7.04218 7.45231 8.96420 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032702 B = 0.004410 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.005690 B = 6347.580349 C = 6529.173373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.048 0.952 9 C 0.055 3.945 10 H -0.001 1.001 11 C -0.099 4.099 12 C -0.109 4.109 13 C 0.065 3.935 14 N -0.540 5.540 15 C 0.065 3.935 16 C -0.066 4.066 17 H 0.082 0.918 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.148 4.148 22 C 0.119 3.881 23 H 0.043 0.957 24 O -0.576 6.576 25 C 0.085 3.915 26 H 0.261 0.739 27 H 0.026 0.974 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.024 0.976 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.383 0.617 44 H 0.048 0.952 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 -19.284 -0.685 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.066 0.934 9 C 0.036 3.964 10 H 0.017 0.983 11 C -0.137 4.137 12 C -0.146 4.146 13 C -0.062 4.062 14 N -0.264 5.264 15 C -0.062 4.062 16 C -0.085 4.085 17 H 0.100 0.900 18 C -0.145 4.145 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.186 4.186 22 C 0.060 3.940 23 H 0.061 0.939 24 O -0.383 6.383 25 C -0.042 4.042 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.231 0.769 44 H 0.066 0.934 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 0.423 -19.265 -0.563 19.278 hybrid contribution 0.546 1.599 0.058 1.690 sum 0.969 -17.666 -0.505 17.700 Atomic orbital electron populations 1.70089 1.07228 1.27165 1.50997 1.25686 0.95567 1.02222 0.94680 0.85656 0.78890 0.79672 0.78130 1.20113 1.19357 1.20793 1.21513 0.93625 0.92575 1.49992 0.93361 1.18552 0.93374 0.91163 0.93291 0.98268 1.21410 0.98359 0.96139 0.97829 1.21565 0.97814 0.94552 1.00709 1.22072 0.96667 0.99076 0.88431 1.61887 1.35037 1.01792 1.27709 1.22071 0.94205 0.90563 0.99406 1.21118 0.97172 0.93690 0.96475 0.89980 1.21448 0.97789 0.93860 1.01428 1.21501 0.98511 0.97047 0.98087 1.21419 0.98081 0.97223 0.98170 1.22224 0.98215 0.95694 1.02444 1.21578 0.90540 0.95485 0.86399 0.93931 1.86438 1.37643 1.94169 1.20009 1.21933 0.94856 0.89306 0.98138 0.93039 0.95491 0.93919 0.91017 0.93043 0.95789 0.89261 0.92073 0.95115 0.92481 0.91792 0.91585 0.91128 0.91162 0.92238 0.90903 0.91290 0.76925 0.93370 0.97125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.43 12.01 21.45 0.26 -54.17 16 2 C 0.02 1.00 5.24 84.66 0.44 1.44 16 3 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.54 -30.84 8.50 25.60 0.22 -30.62 16 8 H 0.05 2.73 7.76 -2.91 -0.02 2.71 16 9 C 0.06 2.89 2.14 -11.49 -0.02 2.87 16 10 H 0.00 -0.05 8.13 -2.39 -0.02 -0.07 16 11 C -0.10 -4.80 5.08 30.67 0.16 -4.64 16 12 C -0.11 -4.16 6.09 30.65 0.19 -3.97 16 13 C 0.07 2.19 5.29 86.32 0.46 2.64 16 14 N -0.54 -19.91 3.94 -896.33 -3.53 -23.44 16 15 C 0.07 2.02 4.31 86.31 0.37 2.39 16 16 C -0.07 -1.63 2.07 -10.79 -0.02 -1.65 16 17 H 0.08 1.92 6.76 -2.39 -0.02 1.91 16 18 C -0.11 -2.25 5.06 30.60 0.15 -2.10 16 19 C -0.11 -1.92 5.92 30.60 0.18 -1.74 16 20 C -0.11 -1.90 5.78 30.59 0.18 -1.72 16 21 C -0.15 -2.83 5.63 30.58 0.17 -2.65 16 22 C 0.12 2.99 3.08 30.58 0.09 3.09 16 23 H 0.04 1.31 7.69 -2.39 -0.02 1.30 16 24 O -0.58 -15.15 11.24 -148.98 -1.67 -16.83 16 25 C 0.09 3.82 4.65 86.32 0.40 4.22 16 26 H 0.26 14.68 8.31 -92.71 -0.77 13.90 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 2.31 6.80 -2.39 -0.02 2.30 16 29 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 2.46 6.67 -2.39 -0.02 2.45 16 33 H 0.06 2.09 7.25 -2.38 -0.02 2.07 16 34 H 0.03 0.91 8.00 -2.39 -0.02 0.89 16 35 H 0.06 1.36 7.68 -2.39 -0.02 1.34 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 1.11 7.68 -2.39 -0.02 1.10 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.38 7.55 9.08 -74.05 -0.67 6.88 16 44 H 0.05 2.22 7.93 -2.39 -0.02 2.20 16 45 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -63.67 336.19 0.31 -63.36 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.26 Total: 16.88 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 2.97 Total: -32.44 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -3.28 Total: -77.62 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -1.67 Total: -16.83 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -63.67 0.31 -63.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397606775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.115 kcal (2) G-P(sol) polarization free energy of solvation -63.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds