Wall clock time and date at job start Mon Mar 30 2020 06:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00069 * 2 1 4 4 H 1.48499 * 109.46972 * 239.99835 * 3 2 1 5 5 H 1.48502 * 109.46896 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46969 * 120.00007 * 3 2 1 7 7 C 1.37871 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00135 * 180.27261 * 7 2 1 9 9 C 1.50705 * 120.00433 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50040 * 59.99869 * 9 7 2 11 11 C 1.53116 * 109.49953 * 299.91908 * 9 7 2 12 12 C 1.53117 * 109.16230 * 182.40294 * 11 9 7 13 13 C 1.53039 * 109.27796 * 57.65417 * 12 11 9 14 14 N 1.46854 * 109.52168 * 300.82098 * 13 12 11 15 15 C 1.46898 * 111.00130 * 185.83661 * 14 13 12 16 16 C 1.52998 * 109.47185 * 288.73472 * 15 14 13 17 17 H 1.09003 * 109.47408 * 32.68087 * 16 15 14 18 18 C 1.52996 * 109.47173 * 272.68019 * 16 15 14 19 19 C 1.53005 * 109.47103 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47335 * 60.00090 * 19 18 16 21 21 C 1.53008 * 109.46911 * 299.99664 * 20 19 18 22 22 C 1.53001 * 109.47119 * 152.67696 * 16 15 14 23 23 H 1.09006 * 109.47112 * 60.00148 * 22 16 15 24 24 O 1.42893 * 109.47532 * 299.99985 * 22 16 15 25 25 C 1.46855 * 111.22945 * 61.72272 * 14 13 12 26 26 H 0.97007 * 119.99654 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.52383 * 302.30619 * 11 9 7 28 28 H 1.09000 * 109.52224 * 62.49766 * 11 9 7 29 29 H 1.08994 * 109.50848 * 177.59227 * 12 11 9 30 30 H 1.08999 * 109.50058 * 297.67702 * 12 11 9 31 31 H 1.08998 * 109.46160 * 60.83594 * 13 12 11 32 32 H 1.08996 * 109.46393 * 180.80895 * 13 12 11 33 33 H 1.09004 * 109.46669 * 48.73103 * 15 14 13 34 34 H 1.08996 * 109.47577 * 168.73414 * 15 14 13 35 35 H 1.09006 * 109.46959 * 299.99791 * 18 16 15 36 36 H 1.08996 * 109.46984 * 60.00013 * 18 16 15 37 37 H 1.08997 * 109.46581 * 299.99574 * 19 18 16 38 38 H 1.09007 * 109.46705 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.47019 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.47257 * 59.99960 * 20 19 18 41 41 H 1.08997 * 109.47350 * 300.00728 * 21 20 19 42 42 H 1.08996 * 109.46943 * 180.02562 * 21 20 19 43 43 H 0.96704 * 114.00193 * 179.97438 * 24 22 16 44 44 H 1.09001 * 109.49171 * 178.28226 * 25 14 13 45 45 H 1.09005 * 109.42898 * 58.31419 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0050 9 6 1.2510 -2.4992 0.0005 10 1 0.6244 -2.5576 -0.8895 11 6 0.3715 -2.5816 1.2512 12 6 -0.3443 -3.9350 1.2740 13 6 0.6958 -5.0572 1.2407 14 7 1.5110 -4.9348 0.0254 15 6 2.4284 -6.0741 -0.1102 16 6 3.5329 -5.9676 0.9432 17 1 3.1325 -5.5018 1.8437 18 6 4.6798 -5.1161 0.3953 19 6 5.7846 -5.0102 1.4485 20 6 6.3040 -6.4093 1.7853 21 6 5.1570 -7.2609 2.3333 22 6 4.0523 -7.3666 1.2807 23 1 4.4527 -7.8325 0.3802 24 8 2.9812 -8.1619 1.7924 25 6 2.2448 -3.6629 0.0031 26 1 -0.4850 0.8401 -0.0004 27 1 0.9934 -2.4834 2.1410 28 1 -0.3664 -1.7796 1.2311 29 1 -0.9389 -4.0170 2.1838 30 1 -0.9964 -4.0165 0.4044 31 1 1.3383 -4.9830 2.1180 32 1 0.1890 -6.0222 1.2423 33 1 1.8772 -7.0034 0.0339 34 1 2.8733 -6.0660 -1.1052 35 1 5.0802 -5.5820 -0.5052 36 1 4.3097 -4.1195 0.1550 37 1 5.3845 -4.5445 2.3491 38 1 6.6020 -4.4039 1.0579 39 1 7.0914 -6.3338 2.5352 40 1 6.7041 -6.8749 0.8847 41 1 4.7569 -6.7952 3.2339 42 1 5.5271 -8.2575 2.5737 43 1 3.2385 -9.0639 2.0277 44 1 2.8624 -3.6150 -0.8937 45 1 2.8806 -3.5956 0.8859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397606776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:58 Heat of formation + Delta-G solvation = -73.266825 kcal Electronic energy + Delta-G solvation = -22134.496969 eV Core-core repulsion = 19150.449296 eV Total energy + Delta-G solvation = -2984.047673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.79163 -37.67199 -35.53674 -33.93877 -32.18851 -30.16573 -29.77279 -29.35395 -25.52907 -24.85207 -22.64950 -22.29659 -21.24523 -20.55451 -19.87495 -18.37385 -17.23607 -16.36233 -15.37804 -15.11646 -14.64243 -14.50626 -14.24649 -13.86559 -13.71873 -13.26604 -12.88830 -12.75887 -12.72715 -12.21931 -12.10103 -11.75220 -11.71411 -11.30380 -11.13990 -10.97781 -10.88538 -10.70629 -10.66397 -10.55735 -10.23832 -10.08694 -9.95654 -9.83310 -9.70626 -9.37020 -8.89648 -8.62374 -8.24375 -7.42046 -5.92141 -3.98299 3.34627 3.39483 3.41579 4.15085 4.45408 4.62395 4.64365 4.80628 4.97098 5.13276 5.19721 5.34530 5.37648 5.41387 5.48389 5.53732 5.73219 5.82911 5.84556 5.91675 6.00224 6.04506 6.08564 6.17541 6.21551 6.27119 6.32030 6.40674 6.42332 6.52271 6.59694 6.65171 6.85549 6.86481 7.06898 7.31241 7.49829 7.62363 7.79135 7.83071 7.96614 8.16313 8.24856 8.54575 9.05847 9.65604 11.13750 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022300 B = 0.005687 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.325269 B = 4922.754203 C = 5825.311455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.066 3.934 14 N -0.535 5.535 15 C 0.061 3.939 16 C -0.113 4.113 17 H 0.078 0.922 18 C -0.130 4.130 19 C -0.122 4.122 20 C -0.115 4.115 21 C -0.150 4.150 22 C 0.113 3.887 23 H 0.051 0.949 24 O -0.563 6.563 25 C 0.064 3.936 26 H 0.259 0.741 27 H 0.028 0.972 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.023 0.977 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.371 0.629 44 H 0.058 0.942 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.882 -14.740 3.457 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.034 3.966 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.062 4.062 14 N -0.258 5.258 15 C -0.067 4.067 16 C -0.133 4.133 17 H 0.097 0.903 18 C -0.167 4.167 19 C -0.160 4.160 20 C -0.153 4.153 21 C -0.188 4.188 22 C 0.054 3.946 23 H 0.069 0.931 24 O -0.368 6.368 25 C -0.063 4.063 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.217 0.783 44 H 0.076 0.924 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.055 -14.046 2.937 16.455 hybrid contribution 1.487 0.374 0.930 1.793 sum 9.542 -13.672 3.867 17.115 Atomic orbital electron populations 1.69891 1.05822 1.26316 1.50691 1.24926 0.94797 0.98846 0.95226 0.86723 0.79642 0.83487 0.78496 1.20338 1.21345 1.20439 1.21113 0.92699 0.90748 1.50644 0.92994 1.18691 0.92740 0.90448 0.94765 0.94945 1.21638 0.99983 0.94737 0.98412 1.21691 0.97308 0.96612 1.00025 1.21990 0.95300 0.98437 0.90513 1.62200 1.23486 1.02455 1.37672 1.22246 0.92267 0.95106 0.97112 1.21828 0.97171 0.93252 1.01014 0.90335 1.22063 0.94809 1.02083 0.97753 1.21565 0.98462 0.96249 0.99677 1.21476 0.97121 0.96041 1.00637 1.22256 0.96728 1.00023 0.99824 1.21784 0.86258 0.92176 0.94386 0.93060 1.86574 1.36874 1.27107 1.86264 1.22506 0.96469 0.88710 0.98620 0.93069 0.95332 0.89250 0.93744 0.92223 0.95865 0.92492 0.90714 0.91589 0.92211 0.88761 0.91912 0.91862 0.92126 0.92108 0.91324 0.92261 0.78271 0.92378 0.95396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 11.35 55.43 0.63 -25.02 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.13 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.05 1.33 2.26 -91.69 -0.21 1.12 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.67 5.03 -26.61 -0.13 -2.80 16 12 C -0.12 -2.44 6.09 -26.65 -0.16 -2.60 16 13 C 0.07 1.24 5.18 -3.83 -0.02 1.22 16 14 N -0.54 -10.31 4.86 -234.66 -1.14 -11.45 16 15 C 0.06 0.98 5.17 -3.83 -0.02 0.96 16 16 C -0.11 -1.62 1.34 -90.62 -0.12 -1.74 16 17 H 0.08 1.33 5.87 -51.93 -0.30 1.03 16 18 C -0.13 -1.79 4.58 -26.73 -0.12 -1.91 16 19 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 20 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 21 C -0.15 -1.55 5.54 -26.75 -0.15 -1.70 16 22 C 0.11 1.33 2.88 -26.75 -0.08 1.25 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 O -0.56 -6.70 12.36 -35.23 -0.44 -7.14 16 25 C 0.06 1.35 2.90 -3.83 -0.01 1.34 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.02 0.45 6.60 -51.93 -0.34 0.11 16 32 H 0.06 1.00 8.00 -51.93 -0.42 0.59 16 33 H 0.07 1.19 6.93 -51.93 -0.36 0.83 16 34 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 35 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 36 H 0.09 1.53 4.40 -51.93 -0.23 1.30 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.37 2.71 9.08 45.56 0.41 3.12 16 44 H 0.06 1.23 7.34 -51.93 -0.38 0.85 16 45 H 0.03 0.60 5.68 -51.93 -0.29 0.30 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -29.24 327.75 -10.01 -39.25 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.25 Total: 3.63 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -1.73 Total: -20.58 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.51 Total: -36.47 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.44 Total: -7.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.24 -10.01 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397606776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.019 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds