Wall clock time and date at job start Mon Mar 30 2020 06:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00069 * 2 1 4 4 H 1.48499 * 109.46972 * 239.99835 * 3 2 1 5 5 H 1.48502 * 109.46896 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46969 * 120.00007 * 3 2 1 7 7 C 1.37871 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00135 * 180.27261 * 7 2 1 9 9 C 1.50705 * 120.00433 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50040 * 59.99869 * 9 7 2 11 11 C 1.53116 * 109.49953 * 299.91908 * 9 7 2 12 12 C 1.53117 * 109.16230 * 182.40294 * 11 9 7 13 13 C 1.53039 * 109.27796 * 57.65417 * 12 11 9 14 14 N 1.46854 * 109.52168 * 300.82098 * 13 12 11 15 15 C 1.46898 * 111.00130 * 185.83661 * 14 13 12 16 16 C 1.52998 * 109.47185 * 288.73472 * 15 14 13 17 17 H 1.09003 * 109.47408 * 32.68087 * 16 15 14 18 18 C 1.52996 * 109.47173 * 272.68019 * 16 15 14 19 19 C 1.53005 * 109.47103 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47335 * 60.00090 * 19 18 16 21 21 C 1.53008 * 109.46911 * 299.99664 * 20 19 18 22 22 C 1.53001 * 109.47119 * 152.67696 * 16 15 14 23 23 H 1.09006 * 109.47112 * 60.00148 * 22 16 15 24 24 O 1.42893 * 109.47532 * 299.99985 * 22 16 15 25 25 C 1.46855 * 111.22945 * 61.72272 * 14 13 12 26 26 H 0.97007 * 119.99654 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.52383 * 302.30619 * 11 9 7 28 28 H 1.09000 * 109.52224 * 62.49766 * 11 9 7 29 29 H 1.08994 * 109.50848 * 177.59227 * 12 11 9 30 30 H 1.08999 * 109.50058 * 297.67702 * 12 11 9 31 31 H 1.08998 * 109.46160 * 60.83594 * 13 12 11 32 32 H 1.08996 * 109.46393 * 180.80895 * 13 12 11 33 33 H 1.09004 * 109.46669 * 48.73103 * 15 14 13 34 34 H 1.08996 * 109.47577 * 168.73414 * 15 14 13 35 35 H 1.09006 * 109.46959 * 299.99791 * 18 16 15 36 36 H 1.08996 * 109.46984 * 60.00013 * 18 16 15 37 37 H 1.08997 * 109.46581 * 299.99574 * 19 18 16 38 38 H 1.09007 * 109.46705 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.47019 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.47257 * 59.99960 * 20 19 18 41 41 H 1.08997 * 109.47350 * 300.00728 * 21 20 19 42 42 H 1.08996 * 109.46943 * 180.02562 * 21 20 19 43 43 H 0.96704 * 114.00193 * 179.97438 * 24 22 16 44 44 H 1.09001 * 109.49171 * 178.28226 * 25 14 13 45 45 H 1.09005 * 109.42898 * 58.31419 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0050 9 6 1.2510 -2.4992 0.0005 10 1 0.6244 -2.5576 -0.8895 11 6 0.3715 -2.5816 1.2512 12 6 -0.3443 -3.9350 1.2740 13 6 0.6958 -5.0572 1.2407 14 7 1.5110 -4.9348 0.0254 15 6 2.4284 -6.0741 -0.1102 16 6 3.5329 -5.9676 0.9432 17 1 3.1325 -5.5018 1.8437 18 6 4.6798 -5.1161 0.3953 19 6 5.7846 -5.0102 1.4485 20 6 6.3040 -6.4093 1.7853 21 6 5.1570 -7.2609 2.3333 22 6 4.0523 -7.3666 1.2807 23 1 4.4527 -7.8325 0.3802 24 8 2.9812 -8.1619 1.7924 25 6 2.2448 -3.6629 0.0031 26 1 -0.4850 0.8401 -0.0004 27 1 0.9934 -2.4834 2.1410 28 1 -0.3664 -1.7796 1.2311 29 1 -0.9389 -4.0170 2.1838 30 1 -0.9964 -4.0165 0.4044 31 1 1.3383 -4.9830 2.1180 32 1 0.1890 -6.0222 1.2423 33 1 1.8772 -7.0034 0.0339 34 1 2.8733 -6.0660 -1.1052 35 1 5.0802 -5.5820 -0.5052 36 1 4.3097 -4.1195 0.1550 37 1 5.3845 -4.5445 2.3491 38 1 6.6020 -4.4039 1.0579 39 1 7.0914 -6.3338 2.5352 40 1 6.7041 -6.8749 0.8847 41 1 4.7569 -6.7952 3.2339 42 1 5.5271 -8.2575 2.5737 43 1 3.2385 -9.0639 2.0277 44 1 2.8624 -3.6150 -0.8937 45 1 2.8806 -3.5956 0.8859 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397606776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:57 Heat of formation + Delta-G solvation = -92.654876 kcal Electronic energy + Delta-G solvation = -22135.337698 eV Core-core repulsion = 19150.449296 eV Total energy + Delta-G solvation = -2984.888402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00948 -39.06705 -36.48837 -35.67962 -33.91567 -31.81705 -31.19021 -30.45524 -27.07794 -26.70406 -23.80864 -23.67565 -22.81765 -21.94962 -20.90549 -20.06614 -18.43423 -18.11330 -16.88471 -16.38300 -16.29056 -15.86416 -15.53768 -15.07918 -14.90274 -14.67258 -14.40557 -14.37194 -13.95486 -13.76775 -13.55510 -13.19913 -12.98556 -12.82665 -12.68659 -12.57999 -12.37777 -12.10982 -12.00839 -11.82575 -11.69712 -11.61032 -11.41272 -11.21385 -11.14283 -10.76032 -10.71583 -10.57856 -10.36353 -8.95171 -8.06353 -6.20616 1.41324 1.42838 1.50368 2.43517 3.17285 3.20413 3.35404 3.68938 3.80038 3.99775 4.15946 4.21724 4.26423 4.30430 4.33176 4.44288 4.48776 4.50877 4.58336 4.63834 4.70168 4.82448 4.88697 4.91221 4.96531 5.01903 5.03856 5.11375 5.17285 5.20833 5.22601 5.28868 5.30641 5.39034 5.40992 5.52599 5.54650 5.64180 5.98573 6.14458 6.23988 6.43074 6.49266 6.92182 6.98586 7.47071 8.98332 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022300 B = 0.005687 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.325269 B = 4922.754203 C = 5825.311455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.049 3.951 10 H -0.007 1.007 11 C -0.102 4.102 12 C -0.112 4.112 13 C 0.073 3.927 14 N -0.548 5.548 15 C 0.064 3.936 16 C -0.107 4.107 17 H 0.050 0.950 18 C -0.128 4.128 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.146 4.146 22 C 0.118 3.882 23 H 0.068 0.932 24 O -0.582 6.582 25 C 0.086 3.914 26 H 0.260 0.740 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.021 0.979 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.056 0.944 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.637 -16.498 3.794 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.030 3.970 10 H 0.011 0.989 11 C -0.140 4.140 12 C -0.150 4.150 13 C -0.055 4.055 14 N -0.271 5.271 15 C -0.064 4.064 16 C -0.128 4.128 17 H 0.068 0.932 18 C -0.165 4.165 19 C -0.160 4.160 20 C -0.148 4.148 21 C -0.184 4.184 22 C 0.059 3.941 23 H 0.086 0.914 24 O -0.390 6.390 25 C -0.041 4.041 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.242 0.758 44 H 0.074 0.926 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 9.823 -15.836 3.279 18.922 hybrid contribution 0.900 0.894 0.810 1.505 sum 10.724 -14.942 4.089 18.841 Atomic orbital electron populations 1.70043 1.07235 1.27062 1.51275 1.25725 0.95631 1.02317 0.94819 0.85693 0.78443 0.79178 0.78827 1.19530 1.20962 1.19712 1.21476 0.92939 0.92083 1.50719 0.92980 1.18646 0.93155 0.91778 0.93429 0.98862 1.21445 0.99084 0.96084 0.97423 1.21608 0.97595 0.95068 1.00707 1.21915 0.94735 0.98483 0.90317 1.62136 1.24428 1.02565 1.37983 1.22287 0.92350 0.93659 0.98102 1.21702 0.96719 0.95314 0.99024 0.93200 1.21974 0.95217 1.00359 0.98974 1.21556 0.98009 0.98043 0.98344 1.21458 0.97282 0.94343 1.01704 1.22218 0.96204 1.01384 0.98559 1.21677 0.86376 0.90430 0.95578 0.91422 1.86513 1.37358 1.28744 1.86389 1.22126 0.95101 0.88512 0.98387 0.93120 0.96209 0.92406 0.91555 0.93132 0.96105 0.90318 0.90023 0.90917 0.90672 0.91875 0.93684 0.91242 0.90812 0.90633 0.93017 0.89556 0.75831 0.92597 0.95602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 11.35 21.45 0.24 -54.34 16 2 C 0.01 0.78 5.30 84.65 0.45 1.23 16 3 Si 0.95 44.45 29.54 68.60 2.03 46.47 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.53 -30.28 8.56 25.60 0.22 -30.06 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.05 2.58 2.26 -11.49 -0.03 2.55 16 10 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 11 C -0.10 -5.16 5.03 30.67 0.15 -5.00 16 12 C -0.11 -4.64 6.09 30.65 0.19 -4.46 16 13 C 0.07 2.73 5.18 86.33 0.45 3.18 16 14 N -0.55 -21.02 4.86 -896.34 -4.35 -25.38 16 15 C 0.06 1.95 5.17 86.30 0.45 2.40 16 16 C -0.11 -2.96 1.34 -10.79 -0.01 -2.97 16 17 H 0.05 1.68 5.87 -2.39 -0.01 1.66 16 18 C -0.13 -3.40 4.58 30.59 0.14 -3.26 16 19 C -0.12 -2.80 5.92 30.60 0.18 -2.62 16 20 C -0.11 -1.90 5.92 30.60 0.18 -1.72 16 21 C -0.15 -2.57 5.54 30.58 0.17 -2.40 16 22 C 0.12 2.44 2.88 30.58 0.09 2.53 16 23 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 24 O -0.58 -12.18 12.36 -148.98 -1.84 -14.02 16 25 C 0.09 3.75 2.90 86.32 0.25 4.00 16 26 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 27 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.06 3.27 6.15 -2.39 -0.01 3.26 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.02 0.79 6.60 -2.39 -0.02 0.78 16 32 H 0.08 2.61 8.00 -2.39 -0.02 2.60 16 33 H 0.08 2.41 6.93 -2.38 -0.02 2.39 16 34 H 0.07 2.12 7.85 -2.39 -0.02 2.11 16 35 H 0.07 1.75 8.11 -2.38 -0.02 1.73 16 36 H 0.06 2.07 4.40 -2.39 -0.01 2.06 16 37 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.39 4.39 9.08 -74.05 -0.67 3.71 16 44 H 0.06 2.42 7.34 -2.39 -0.02 2.41 16 45 H 0.03 1.14 5.68 -2.38 -0.01 1.13 16 Total: -1.00 -64.60 327.75 -0.77 -65.37 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.28 Total: 18.49 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 2.87 Total: -36.60 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -4.11 Total: -79.72 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.84 Total: -14.02 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -64.60 -0.77 -65.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397606776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.280 kcal (2) G-P(sol) polarization free energy of solvation -64.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds