Wall clock time and date at job start Mon Mar 30 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99677 * 2 1 4 4 H 1.48506 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47230 * 299.99420 * 3 2 1 6 6 H 1.48503 * 109.47524 * 59.99757 * 3 2 1 7 7 C 1.37877 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99527 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00113 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.50300 * 60.07628 * 9 7 2 11 11 C 1.53118 * 109.50751 * 299.99937 * 9 7 2 12 12 C 1.53121 * 109.16359 * 182.36548 * 11 9 7 13 13 C 1.53035 * 109.27580 * 57.65340 * 12 11 9 14 14 N 1.46850 * 109.52580 * 300.81712 * 13 12 11 15 15 C 1.46898 * 110.99928 * 185.84299 * 14 13 12 16 16 C 1.52997 * 109.47386 * 66.04971 * 15 14 13 17 17 H 1.09001 * 109.46832 * 304.99869 * 16 15 14 18 18 C 1.53006 * 109.47127 * 64.99548 * 16 15 14 19 19 C 1.52997 * 109.47127 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47060 * 300.00449 * 19 18 16 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.52997 * 109.47232 * 184.99670 * 16 15 14 23 23 H 1.09001 * 109.47375 * 299.99867 * 22 16 15 24 24 O 1.42905 * 109.46921 * 59.99881 * 22 16 15 25 25 C 1.46843 * 111.19327 * 61.74510 * 14 13 12 26 26 H 0.96999 * 120.00503 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.52187 * 62.45465 * 11 9 7 28 28 H 1.09003 * 109.51857 * 302.27170 * 11 9 7 29 29 H 1.09003 * 109.50017 * 297.71161 * 12 11 9 30 30 H 1.09002 * 109.53704 * 177.61426 * 12 11 9 31 31 H 1.09003 * 109.45698 * 180.80358 * 13 12 11 32 32 H 1.08994 * 109.45872 * 60.83601 * 13 12 11 33 33 H 1.09004 * 109.47163 * 306.04509 * 15 14 13 34 34 H 1.09002 * 109.46852 * 186.05057 * 15 14 13 35 35 H 1.08998 * 109.46505 * 59.99871 * 18 16 15 36 36 H 1.08996 * 109.46884 * 300.00752 * 18 16 15 37 37 H 1.09002 * 109.47153 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.46832 * 60.00321 * 19 18 16 39 39 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 41 41 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 42 42 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 43 43 H 0.96697 * 113.99519 * 179.97438 * 24 22 16 44 44 H 1.08997 * 109.46274 * 58.27501 * 25 14 13 45 45 H 1.08998 * 109.46342 * 178.24325 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6255 -2.5582 -0.8902 11 6 0.3700 -2.5808 1.2501 12 6 -0.3465 -3.9339 1.2724 13 6 0.6931 -5.0565 1.2406 14 7 1.5098 -4.9349 0.0262 15 6 2.4267 -6.0748 -0.1078 16 6 1.6198 -7.3540 -0.3386 17 1 0.8917 -7.4740 0.4636 18 6 0.8899 -7.2616 -1.6802 19 6 0.0835 -8.5411 -1.9113 20 6 1.0289 -9.7439 -1.9268 21 6 1.7587 -9.8364 -0.5852 22 6 2.5647 -8.5572 -0.3540 23 1 3.2928 -8.4373 -1.1562 24 8 3.2464 -8.6435 0.8990 25 6 2.2442 -3.6635 0.0055 26 1 -0.4851 0.8400 -0.0004 27 1 -0.3674 -1.7785 1.2290 28 1 0.9909 -2.4827 2.1406 29 1 -0.9971 -4.0155 0.4017 30 1 -0.9428 -4.0157 2.1812 31 1 0.1858 -6.0213 1.2420 32 1 1.3346 -4.9824 2.1187 33 1 3.0160 -6.1763 0.8036 34 1 3.0928 -5.9076 -0.9543 35 1 1.6181 -7.1415 -2.4823 36 1 0.2168 -6.4043 -1.6693 37 1 -0.4361 -8.4754 -2.8672 38 1 -0.6446 -8.6615 -1.1091 39 1 0.4544 -10.6554 -2.0918 40 1 1.7570 -9.6235 -2.7290 41 1 1.0307 -9.9568 0.2169 42 1 2.4319 -10.6936 -0.5961 43 1 3.8634 -9.3855 0.9608 44 1 2.8784 -3.5959 0.8894 45 1 2.8635 -3.6163 -0.8901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397606780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:00 Heat of formation + Delta-G solvation = -81.222819 kcal Electronic energy + Delta-G solvation = -21630.246950 eV Core-core repulsion = 18645.854280 eV Total energy + Delta-G solvation = -2984.392671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.50778 -37.76283 -35.57369 -33.93995 -32.12932 -30.43275 -29.72996 -29.44023 -25.28155 -24.89258 -22.76433 -22.05007 -21.58395 -20.46495 -19.57762 -18.48802 -17.27436 -16.32814 -15.51469 -15.16109 -14.70323 -14.39552 -14.16085 -13.83830 -13.72298 -13.32072 -13.15692 -12.83282 -12.53327 -12.42779 -12.13169 -11.79760 -11.63892 -11.37805 -11.33016 -10.93005 -10.85611 -10.71119 -10.62907 -10.52233 -10.30082 -10.14159 -9.89091 -9.82963 -9.74353 -9.38242 -8.91070 -8.62632 -8.24924 -7.51235 -5.92573 -3.98380 3.32884 3.40810 3.44780 4.13745 4.40368 4.53357 4.64091 4.76440 4.97725 5.09029 5.20904 5.32849 5.37426 5.43437 5.46669 5.52207 5.71169 5.74816 5.82107 5.92669 5.97719 6.00340 6.04695 6.14211 6.19312 6.22285 6.34302 6.39918 6.51393 6.55701 6.59509 6.60922 6.81495 6.84372 7.05765 7.30191 7.48725 7.59554 7.78309 7.82359 7.94495 8.15659 8.24206 8.54999 9.06095 9.65671 11.13348 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033570 B = 0.004169 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.879898 B = 6715.240617 C = 6849.170208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.033 0.967 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.062 3.938 14 N -0.536 5.536 15 C 0.062 3.938 16 C -0.073 4.073 17 H 0.076 0.924 18 C -0.105 4.105 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.149 4.149 22 C 0.108 3.892 23 H 0.052 0.948 24 O -0.565 6.565 25 C 0.068 3.932 26 H 0.258 0.742 27 H 0.090 0.910 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.021 0.979 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.371 0.629 44 H 0.017 0.983 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 -18.997 -1.622 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.066 4.066 14 N -0.260 5.260 15 C -0.066 4.066 16 C -0.092 4.092 17 H 0.094 0.906 18 C -0.142 4.142 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.187 4.187 22 C 0.049 3.951 23 H 0.070 0.930 24 O -0.369 6.369 25 C -0.058 4.058 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.218 0.782 44 H 0.035 0.965 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.287 -18.330 -1.902 18.473 hybrid contribution 1.399 0.346 0.625 1.571 sum 2.687 -17.984 -1.277 18.228 Atomic orbital electron populations 1.69902 1.05820 1.26109 1.50936 1.24929 0.94810 0.98896 0.95217 0.86590 0.80151 0.84053 0.77496 1.19886 1.21071 1.21137 1.21208 0.92857 0.90751 1.50343 0.92862 1.18657 0.92620 0.90293 0.94793 0.94837 1.21644 0.99990 0.94740 0.98455 1.21672 0.97206 0.96576 0.99997 1.22044 0.95660 0.98501 0.90351 1.61987 1.24088 1.02196 1.37744 1.22011 0.94140 0.90197 1.00255 1.21148 0.96628 0.92523 0.98880 0.90585 1.21475 0.99319 0.97816 0.95635 1.21611 0.97999 0.94811 1.01665 1.21489 0.98646 0.98528 0.96754 1.22235 1.00078 0.97746 0.98613 1.21872 0.93156 0.94719 0.85346 0.92956 1.86586 1.60222 1.53584 1.36556 1.22280 0.96356 0.88645 0.98567 0.93186 0.89197 0.95280 0.92212 0.93754 0.92374 0.96112 0.94704 0.91727 0.92314 0.89528 0.91947 0.92069 0.92144 0.92017 0.91294 0.92197 0.78240 0.96501 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 11.35 55.43 0.63 -25.04 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.33 8.57 -34.44 -0.30 -14.62 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.68 5.02 -26.61 -0.13 -2.82 16 12 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 13 C 0.06 1.16 5.30 -3.83 -0.02 1.14 16 14 N -0.54 -10.18 4.11 -234.68 -0.96 -11.14 16 15 C 0.06 1.01 4.27 -3.83 -0.02 0.99 16 16 C -0.07 -0.98 1.86 -90.62 -0.17 -1.15 16 17 H 0.08 1.11 6.23 -51.93 -0.32 0.79 16 18 C -0.10 -1.32 5.09 -26.73 -0.14 -1.46 16 19 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 20 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 21 C -0.15 -1.37 5.54 -26.76 -0.15 -1.52 16 22 C 0.11 1.21 2.90 -26.76 -0.08 1.13 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 O -0.56 -6.60 12.56 -35.23 -0.44 -7.04 16 25 C 0.07 1.51 4.68 -3.83 -0.02 1.49 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.97 6.13 -51.93 -0.32 0.65 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.03 0.61 7.52 -51.93 -0.39 0.22 16 34 H 0.06 1.03 7.98 -51.93 -0.41 0.61 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.28 7.75 -51.93 -0.40 0.88 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.37 2.64 9.08 45.56 0.41 3.06 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -29.43 336.51 -10.15 -39.59 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.63 Total: 1.14 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -1.79 Total: -19.09 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.34 Total: -36.19 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.44 Total: -7.04 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.43 -10.15 -39.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397606780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.635 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds