Wall clock time and date at job start Mon Mar 30 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99677 * 2 1 4 4 H 1.48506 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47230 * 299.99420 * 3 2 1 6 6 H 1.48503 * 109.47524 * 59.99757 * 3 2 1 7 7 C 1.37877 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99527 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00113 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.50300 * 60.07628 * 9 7 2 11 11 C 1.53118 * 109.50751 * 299.99937 * 9 7 2 12 12 C 1.53121 * 109.16359 * 182.36548 * 11 9 7 13 13 C 1.53035 * 109.27580 * 57.65340 * 12 11 9 14 14 N 1.46850 * 109.52580 * 300.81712 * 13 12 11 15 15 C 1.46898 * 110.99928 * 185.84299 * 14 13 12 16 16 C 1.52997 * 109.47386 * 66.04971 * 15 14 13 17 17 H 1.09001 * 109.46832 * 304.99869 * 16 15 14 18 18 C 1.53006 * 109.47127 * 64.99548 * 16 15 14 19 19 C 1.52997 * 109.47127 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47060 * 300.00449 * 19 18 16 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.52997 * 109.47232 * 184.99670 * 16 15 14 23 23 H 1.09001 * 109.47375 * 299.99867 * 22 16 15 24 24 O 1.42905 * 109.46921 * 59.99881 * 22 16 15 25 25 C 1.46843 * 111.19327 * 61.74510 * 14 13 12 26 26 H 0.96999 * 120.00503 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.52187 * 62.45465 * 11 9 7 28 28 H 1.09003 * 109.51857 * 302.27170 * 11 9 7 29 29 H 1.09003 * 109.50017 * 297.71161 * 12 11 9 30 30 H 1.09002 * 109.53704 * 177.61426 * 12 11 9 31 31 H 1.09003 * 109.45698 * 180.80358 * 13 12 11 32 32 H 1.08994 * 109.45872 * 60.83601 * 13 12 11 33 33 H 1.09004 * 109.47163 * 306.04509 * 15 14 13 34 34 H 1.09002 * 109.46852 * 186.05057 * 15 14 13 35 35 H 1.08998 * 109.46505 * 59.99871 * 18 16 15 36 36 H 1.08996 * 109.46884 * 300.00752 * 18 16 15 37 37 H 1.09002 * 109.47153 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.46832 * 60.00321 * 19 18 16 39 39 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 41 41 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 42 42 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 43 43 H 0.96697 * 113.99519 * 179.97438 * 24 22 16 44 44 H 1.08997 * 109.46274 * 58.27501 * 25 14 13 45 45 H 1.08998 * 109.46342 * 178.24325 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6255 -2.5582 -0.8902 11 6 0.3700 -2.5808 1.2501 12 6 -0.3465 -3.9339 1.2724 13 6 0.6931 -5.0565 1.2406 14 7 1.5098 -4.9349 0.0262 15 6 2.4267 -6.0748 -0.1078 16 6 1.6198 -7.3540 -0.3386 17 1 0.8917 -7.4740 0.4636 18 6 0.8899 -7.2616 -1.6802 19 6 0.0835 -8.5411 -1.9113 20 6 1.0289 -9.7439 -1.9268 21 6 1.7587 -9.8364 -0.5852 22 6 2.5647 -8.5572 -0.3540 23 1 3.2928 -8.4373 -1.1562 24 8 3.2464 -8.6435 0.8990 25 6 2.2442 -3.6635 0.0055 26 1 -0.4851 0.8400 -0.0004 27 1 -0.3674 -1.7785 1.2290 28 1 0.9909 -2.4827 2.1406 29 1 -0.9971 -4.0155 0.4017 30 1 -0.9428 -4.0157 2.1812 31 1 0.1858 -6.0213 1.2420 32 1 1.3346 -4.9824 2.1187 33 1 3.0160 -6.1763 0.8036 34 1 3.0928 -5.9076 -0.9543 35 1 1.6181 -7.1415 -2.4823 36 1 0.2168 -6.4043 -1.6693 37 1 -0.4361 -8.4754 -2.8672 38 1 -0.6446 -8.6615 -1.1091 39 1 0.4544 -10.6554 -2.0918 40 1 1.7570 -9.6235 -2.7290 41 1 1.0307 -9.9568 0.2169 42 1 2.4319 -10.6936 -0.5961 43 1 3.8634 -9.3855 0.9608 44 1 2.8784 -3.5959 0.8894 45 1 2.8635 -3.6163 -0.8901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397606780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:00 Heat of formation + Delta-G solvation = -99.848907 kcal Electronic energy + Delta-G solvation = -21631.054638 eV Core-core repulsion = 18645.854280 eV Total energy + Delta-G solvation = -2985.200359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62104 -39.23969 -36.47236 -35.66491 -33.85602 -31.90402 -31.33600 -30.42482 -26.93846 -26.59518 -23.95884 -23.34389 -23.17363 -21.59000 -20.64154 -20.30795 -18.41398 -18.12518 -16.86942 -16.61992 -16.12885 -15.84479 -15.20912 -15.13527 -14.99690 -14.72486 -14.56683 -14.33821 -13.91653 -13.79252 -13.67360 -13.13453 -12.95811 -12.86546 -12.64806 -12.52100 -12.41183 -12.27625 -11.92698 -11.76430 -11.67281 -11.55876 -11.38134 -11.26463 -10.98925 -10.86554 -10.65458 -10.55224 -10.35840 -9.09892 -8.07818 -6.22070 1.40061 1.41481 1.53115 2.42863 3.06787 3.18915 3.36237 3.71216 3.88747 4.06045 4.17867 4.20610 4.27303 4.32243 4.40269 4.48122 4.51578 4.55452 4.61880 4.64364 4.68147 4.79386 4.85743 4.90739 4.97751 5.02397 5.07813 5.14569 5.18240 5.23545 5.27237 5.30776 5.39126 5.40322 5.50784 5.55688 5.60169 5.63741 5.97250 6.12456 6.21567 6.37627 6.46897 6.90290 6.97083 7.45708 8.97024 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033570 B = 0.004169 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.879898 B = 6715.240617 C = 6849.170208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.055 3.945 10 H -0.001 1.001 11 C -0.103 4.103 12 C -0.109 4.109 13 C 0.068 3.932 14 N -0.538 5.538 15 C 0.066 3.934 16 C -0.068 4.068 17 H 0.065 0.935 18 C -0.102 4.102 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.142 4.142 22 C 0.111 3.889 23 H 0.059 0.941 24 O -0.585 6.585 25 C 0.082 3.918 26 H 0.260 0.740 27 H 0.059 0.941 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.016 0.984 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.391 0.609 44 H 0.008 0.992 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 -20.875 -1.750 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.068 0.932 9 C 0.036 3.964 10 H 0.017 0.983 11 C -0.142 4.142 12 C -0.147 4.147 13 C -0.060 4.060 14 N -0.263 5.263 15 C -0.062 4.062 16 C -0.087 4.087 17 H 0.084 0.916 18 C -0.139 4.139 19 C -0.158 4.158 20 C -0.151 4.151 21 C -0.180 4.180 22 C 0.052 3.948 23 H 0.077 0.923 24 O -0.393 6.393 25 C -0.046 4.046 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.241 0.759 44 H 0.026 0.974 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.928 -20.237 -2.030 20.429 hybrid contribution 1.203 0.930 0.664 1.659 sum 3.131 -19.307 -1.367 19.607 Atomic orbital electron populations 1.70037 1.07149 1.27012 1.51228 1.25712 0.95674 1.02289 0.94720 0.85559 0.79014 0.79718 0.77664 1.19289 1.20445 1.20578 1.21548 0.92927 0.92262 1.50828 0.93248 1.18570 0.92915 0.91183 0.93758 0.98292 1.21461 0.99094 0.96303 0.97308 1.21577 0.97436 0.94749 1.00889 1.22014 0.95125 0.98946 0.89885 1.61955 1.24426 1.01825 1.38063 1.22059 0.94034 0.90316 0.99770 1.21098 0.96634 0.92104 0.98852 0.91631 1.21399 0.99043 0.98211 0.95266 1.21582 0.98020 0.94239 1.01944 1.21484 0.98551 0.98287 0.96786 1.22177 1.00042 0.97304 0.98464 1.21803 0.93068 0.94478 0.85449 0.92299 1.86531 1.60991 1.55077 1.36740 1.21972 0.95348 0.89227 0.98052 0.93041 0.92204 0.96260 0.92828 0.91425 0.89756 0.96559 0.95712 0.91578 0.92152 0.92230 0.91236 0.92342 0.90505 0.91367 0.91979 0.89898 0.75922 0.97380 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.15 11.35 21.45 0.24 -53.90 16 2 C 0.01 0.84 5.30 84.66 0.45 1.29 16 3 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.54 -30.81 8.57 25.60 0.22 -30.59 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.05 2.89 2.26 -11.49 -0.03 2.87 16 10 H 0.00 -0.07 8.14 -2.38 -0.02 -0.08 16 11 C -0.10 -5.19 5.02 30.67 0.15 -5.03 16 12 C -0.11 -4.40 6.09 30.65 0.19 -4.22 16 13 C 0.07 2.49 5.30 86.32 0.46 2.95 16 14 N -0.54 -20.52 4.11 -896.38 -3.68 -24.21 16 15 C 0.07 2.10 4.27 86.30 0.37 2.47 16 16 C -0.07 -1.74 1.86 -10.79 -0.02 -1.76 16 17 H 0.07 1.81 6.23 -2.39 -0.01 1.80 16 18 C -0.10 -2.45 5.09 30.60 0.16 -2.29 16 19 C -0.12 -2.24 5.92 30.59 0.18 -2.06 16 20 C -0.11 -1.65 5.92 30.59 0.18 -1.47 16 21 C -0.14 -2.16 5.54 30.58 0.17 -1.99 16 22 C 0.11 2.21 2.90 30.58 0.09 2.30 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 O -0.59 -12.36 12.56 -148.98 -1.87 -14.24 16 25 C 0.08 3.69 4.68 86.33 0.40 4.09 16 26 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.06 3.35 6.15 -2.39 -0.01 3.34 16 28 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 2.68 6.13 -2.39 -0.01 2.67 16 32 H 0.02 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.02 0.84 7.52 -2.39 -0.02 0.83 16 34 H 0.07 2.07 7.98 -2.39 -0.02 2.05 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.76 7.75 -2.39 -0.02 1.74 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 42 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.39 4.52 9.08 -74.06 -0.67 3.85 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.06 2.48 8.01 -2.39 -0.02 2.46 16 Total: -1.00 -64.43 336.51 -0.05 -64.48 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.26 Total: 14.63 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 2.97 Total: -33.44 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -3.44 Total: -78.11 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -1.87 Total: -14.24 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -64.43 -0.05 -64.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397606780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.372 kcal (2) G-P(sol) polarization free energy of solvation -64.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds