Wall clock time and date at job start Mon Mar 30 2020 07:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 110.55222 * 2 1 4 4 C 1.55003 * 110.61622 * 122.87766 * 2 1 3 5 5 C 1.54814 * 102.08903 * 81.47803 * 4 2 1 6 6 H 1.09007 * 110.48423 * 262.06759 * 5 4 2 7 7 N 1.46902 * 110.48746 * 139.55817 * 5 4 2 8 8 C 1.47906 * 110.99981 * 44.64475 * 7 5 4 9 9 C 1.53988 * 107.05918 * 145.84893 * 8 7 5 10 10 C 1.54594 * 105.14069 * 358.76970 * 9 8 7 11 11 H 1.09002 * 110.72442 * 96.58116 * 10 9 8 12 12 C 1.50694 * 110.72982 * 219.68715 * 10 9 8 13 13 H 1.08000 * 120.00282 * 118.54404 * 12 10 9 14 14 C 1.37879 * 119.99887 * 298.55245 * 12 10 9 15 15 N 1.31517 * 120.00285 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99849 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47338 * 59.99686 * 16 14 12 18 18 H 1.48496 * 109.47125 * 299.99803 * 16 14 12 19 19 H 1.48508 * 109.46983 * 179.97438 * 16 14 12 20 20 C 1.48531 * 111.00253 * 162.03987 * 7 5 4 21 21 C 1.54098 * 104.19010 * 20.87862 * 5 4 2 22 22 C 1.52998 * 109.87551 * 121.45252 * 21 5 4 23 23 C 1.53001 * 109.87850 * 242.60186 * 21 5 4 24 24 O 1.43735 * 107.29493 * 2.03218 * 21 5 4 25 25 H 1.08998 * 109.47144 * 314.18292 * 1 2 3 26 26 H 1.09002 * 109.46931 * 74.18495 * 1 2 3 27 27 H 1.08993 * 109.47153 * 194.18479 * 1 2 3 28 28 H 1.09007 * 109.46803 * 182.87829 * 3 2 1 29 29 H 1.08993 * 109.47267 * 302.87345 * 3 2 1 30 30 H 1.08998 * 109.47539 * 62.87909 * 3 2 1 31 31 H 1.08997 * 110.90450 * 323.27960 * 4 2 1 32 32 H 1.08994 * 110.90581 * 199.67228 * 4 2 1 33 33 H 1.09002 * 109.91835 * 26.48840 * 8 7 5 34 34 H 1.09001 * 109.91574 * 265.20133 * 8 7 5 35 35 H 1.09006 * 110.30565 * 239.85890 * 9 8 7 36 36 H 1.08998 * 110.39390 * 117.73239 * 9 8 7 37 37 H 0.97005 * 119.99400 * 0.02562 * 15 14 12 38 38 H 1.09000 * 110.66685 * 81.84524 * 20 7 5 39 39 H 1.09002 * 110.66678 * 318.71251 * 20 7 5 40 40 H 1.09003 * 109.46921 * 70.73304 * 22 21 5 41 41 H 1.09004 * 109.46990 * 190.72358 * 22 21 5 42 42 H 1.08995 * 109.47531 * 310.73244 * 22 21 5 43 43 H 1.09001 * 109.46575 * 53.49664 * 23 21 5 44 44 H 1.09003 * 109.46678 * 173.49198 * 23 21 5 45 45 H 1.08994 * 109.47373 * 293.49800 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0672 1.4326 0.0000 4 6 2.0758 -0.7875 1.2184 5 6 1.9800 -2.2525 0.7269 6 1 1.0729 -2.7234 1.1058 7 7 3.1655 -3.0133 1.1439 8 6 3.5057 -2.7327 2.5557 9 6 4.0698 -4.0356 3.1520 10 6 3.9969 -5.0693 2.0048 11 1 4.9549 -5.1425 1.4900 12 6 3.5704 -6.4169 2.5275 13 1 2.6563 -6.8692 2.1723 14 6 4.3472 -7.0722 3.4592 15 7 5.4606 -6.5216 3.8915 16 14 3.8181 -8.7423 4.1076 17 1 3.7228 -9.7037 2.9799 18 1 2.4932 -8.6202 4.7672 19 1 4.8180 -9.2310 5.0910 20 6 2.9125 -4.4751 1.0713 21 6 1.9283 -2.1331 -0.8086 22 6 3.0942 -2.9049 -1.4298 23 6 0.5995 -2.6848 -1.3288 24 8 2.0385 -0.7371 -1.1326 25 1 -0.3633 0.7162 0.7369 26 1 -0.3633 0.2801 -0.9888 27 1 -0.3633 -0.9963 0.2518 28 1 3.1558 1.4124 -0.0516 29 1 1.6724 1.9686 -0.8630 30 1 1.7561 1.9373 0.9146 31 1 1.4489 -0.6299 2.0959 32 1 3.1101 -0.5140 1.4267 33 1 2.6109 -2.4317 3.1006 34 1 4.2574 -1.9449 2.6070 35 1 3.4595 -4.3615 3.9942 36 1 5.1034 -3.8926 3.4673 37 1 5.7350 -5.6542 3.5550 38 1 3.0421 -4.8377 0.0515 39 1 1.9149 -4.7117 1.4411 40 1 2.9256 -3.9753 -1.3112 41 1 3.1655 -2.6637 -2.4905 42 1 4.0220 -2.6257 -0.9305 43 1 -0.2250 -2.1956 -0.8100 44 1 0.5204 -2.4928 -2.3989 45 1 0.5563 -3.7588 -1.1482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397653566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:01 Heat of formation + Delta-G solvation = -45.207922 kcal Electronic energy + Delta-G solvation = -22350.564354 eV Core-core repulsion = 19367.733406 eV Total energy + Delta-G solvation = -2982.830948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.58914 -37.77321 -34.25431 -33.55911 -31.86210 -30.21929 -28.58821 -27.79408 -27.55461 -26.50057 -23.99367 -23.13250 -20.68022 -20.27102 -19.38784 -19.20116 -16.85462 -16.17981 -15.64761 -14.95234 -14.86848 -14.70515 -13.84876 -13.64714 -13.38557 -13.21099 -13.04367 -12.77592 -12.45159 -12.33345 -12.13411 -12.02587 -11.84505 -11.76153 -11.53394 -11.42157 -11.02119 -10.96640 -10.70825 -10.58463 -10.48858 -10.37766 -10.17331 -10.08126 -9.73116 -9.47097 -9.39609 -8.49241 -8.35119 -7.83486 -6.33605 -4.06480 3.42793 3.44063 3.62926 3.82022 4.34480 4.52685 4.60179 4.74423 4.88057 5.05403 5.14299 5.28367 5.34370 5.38741 5.45615 5.48181 5.55656 5.57387 5.67123 5.73122 5.77692 5.87438 5.89734 5.96266 6.04072 6.04464 6.10594 6.14983 6.20136 6.22759 6.28890 6.35929 6.43534 6.68110 6.81343 6.90275 6.95905 7.18444 7.26152 7.45038 7.59170 7.71547 8.25141 8.42534 8.88727 9.65982 11.04710 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033695 B = 0.004879 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.792915 B = 5737.814321 C = 6024.820895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.097 3.903 3 C -0.136 4.136 4 C -0.141 4.141 5 C 0.053 3.947 6 H 0.052 0.948 7 N -0.506 5.506 8 C 0.040 3.960 9 C -0.121 4.121 10 C 0.038 3.962 11 H 0.028 0.972 12 C -0.597 4.597 13 H 0.048 0.952 14 C 0.021 3.979 15 N -0.912 5.912 16 Si 1.066 2.934 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.283 1.283 20 C 0.043 3.957 21 C 0.112 3.888 22 C -0.134 4.134 23 C -0.171 4.171 24 O -0.358 6.358 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.273 0.727 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.914 12.693 -6.936 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.058 3.942 3 C -0.193 4.193 4 C -0.178 4.178 5 C -0.057 4.057 6 H 0.070 0.930 7 N -0.230 5.230 8 C -0.088 4.088 9 C -0.160 4.160 10 C 0.019 3.981 11 H 0.046 0.954 12 C -0.635 4.635 13 H 0.066 0.934 14 C -0.183 4.183 15 N -0.548 5.548 16 Si 0.894 3.106 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.208 1.208 20 C -0.083 4.083 21 C 0.073 3.927 22 C -0.191 4.191 23 C -0.229 4.229 24 O -0.278 6.278 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.971 11.723 -6.436 15.569 hybrid contribution -1.382 0.936 -0.266 1.691 sum -9.354 12.660 -6.702 17.108 Atomic orbital electron populations 1.22446 0.95324 1.02491 1.02432 1.22368 0.92995 0.92854 0.86009 1.21717 1.01931 0.93671 1.01991 1.23319 1.02727 0.94169 0.97628 1.23158 0.93391 0.94187 0.94944 0.92988 1.64869 1.31209 1.06453 1.20494 1.22853 0.98540 0.99327 0.88069 1.22627 0.99688 0.93593 1.00081 1.19682 0.93926 0.93546 0.90965 0.95410 1.21921 1.10437 1.03443 1.27714 0.93399 1.25747 0.94076 1.04002 0.94506 1.70788 1.22097 1.18882 1.43023 0.83586 0.75537 0.75062 0.76370 1.21465 1.21607 1.20801 1.23469 0.99028 0.85435 1.00388 1.21965 0.95417 0.82111 0.93254 1.21897 0.98675 0.99448 0.99115 1.22527 0.97185 1.01360 1.01795 1.88916 1.83709 1.16529 1.38623 0.91877 0.91766 0.91673 0.91681 0.92103 0.91446 0.90859 0.89454 0.95128 0.91889 0.92214 0.92770 0.91506 0.91028 0.94712 0.91121 0.93606 0.90056 0.91974 0.92020 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 7.94 37.16 0.30 -1.51 16 2 C 0.10 1.21 1.25 -89.56 -0.11 1.10 16 3 C -0.14 -1.42 8.98 37.16 0.33 -1.09 16 4 C -0.14 -1.91 4.41 -24.72 -0.11 -2.02 16 5 C 0.05 0.83 1.82 -66.18 -0.12 0.71 16 6 H 0.05 0.84 7.27 -51.93 -0.38 0.46 16 7 N -0.51 -9.25 3.48 -220.67 -0.77 -10.02 16 8 C 0.04 0.75 5.41 -2.75 -0.01 0.73 16 9 C -0.12 -2.76 5.34 -25.38 -0.14 -2.90 16 10 C 0.04 0.94 2.62 -89.91 -0.24 0.70 16 11 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 12 C -0.60 -16.41 8.42 -34.44 -0.29 -16.70 16 13 H 0.05 1.31 7.78 -52.49 -0.41 0.90 16 14 C 0.02 0.60 5.33 -17.82 -0.10 0.51 16 15 N -0.91 -27.00 13.42 55.43 0.74 -26.26 16 16 Si 1.07 24.86 29.90 -169.99 -5.08 19.78 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.04 0.90 5.35 -1.90 -0.01 0.89 16 21 C 0.11 1.67 1.13 -90.05 -0.10 1.56 16 22 C -0.13 -2.10 7.73 37.16 0.29 -1.81 16 23 C -0.17 -2.23 8.30 37.16 0.31 -1.92 16 24 O -0.36 -5.37 10.36 -35.23 -0.36 -5.73 16 25 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.72 5.22 -51.93 -0.27 0.45 16 28 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 32 H 0.09 1.26 7.08 -51.93 -0.37 0.89 16 33 H 0.03 0.54 7.35 -51.93 -0.38 0.16 16 34 H 0.06 1.11 7.75 -51.93 -0.40 0.71 16 35 H 0.06 1.47 7.84 -51.93 -0.41 1.06 16 36 H 0.05 1.27 6.96 -51.93 -0.36 0.91 16 37 H 0.27 8.00 5.53 -40.82 -0.23 7.78 16 38 H 0.07 1.43 5.55 -51.93 -0.29 1.14 16 39 H 0.03 0.74 7.64 -51.93 -0.40 0.35 16 40 H 0.07 1.12 5.52 -51.93 -0.29 0.83 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.41 7.21 -51.93 -0.37 1.03 16 43 H 0.06 0.74 5.00 -51.93 -0.26 0.48 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 LS Contribution 327.43 15.07 4.93 4.93 Total: -1.00 -29.07 327.43 -8.36 -37.43 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.82 Total: 1.61 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 0.00 Total: -21.74 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.02 Total: -36.28 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.36 Total: -5.73 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.07 -8.36 -37.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397653566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.781 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds