Wall clock time and date at job start Mon Mar 30 2020 07:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 110.55222 * 2 1 4 4 C 1.55003 * 110.61622 * 122.87766 * 2 1 3 5 5 C 1.54814 * 102.08903 * 81.47803 * 4 2 1 6 6 H 1.09007 * 110.48423 * 262.06759 * 5 4 2 7 7 N 1.46902 * 110.48746 * 139.55817 * 5 4 2 8 8 C 1.47906 * 110.99981 * 44.64475 * 7 5 4 9 9 C 1.53988 * 107.05918 * 145.84893 * 8 7 5 10 10 C 1.54594 * 105.14069 * 358.76970 * 9 8 7 11 11 H 1.09002 * 110.72442 * 96.58116 * 10 9 8 12 12 C 1.50694 * 110.72982 * 219.68715 * 10 9 8 13 13 H 1.08000 * 120.00282 * 118.54404 * 12 10 9 14 14 C 1.37879 * 119.99887 * 298.55245 * 12 10 9 15 15 N 1.31517 * 120.00285 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99849 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47338 * 59.99686 * 16 14 12 18 18 H 1.48496 * 109.47125 * 299.99803 * 16 14 12 19 19 H 1.48508 * 109.46983 * 179.97438 * 16 14 12 20 20 C 1.48531 * 111.00253 * 162.03987 * 7 5 4 21 21 C 1.54098 * 104.19010 * 20.87862 * 5 4 2 22 22 C 1.52998 * 109.87551 * 121.45252 * 21 5 4 23 23 C 1.53001 * 109.87850 * 242.60186 * 21 5 4 24 24 O 1.43735 * 107.29493 * 2.03218 * 21 5 4 25 25 H 1.08998 * 109.47144 * 314.18292 * 1 2 3 26 26 H 1.09002 * 109.46931 * 74.18495 * 1 2 3 27 27 H 1.08993 * 109.47153 * 194.18479 * 1 2 3 28 28 H 1.09007 * 109.46803 * 182.87829 * 3 2 1 29 29 H 1.08993 * 109.47267 * 302.87345 * 3 2 1 30 30 H 1.08998 * 109.47539 * 62.87909 * 3 2 1 31 31 H 1.08997 * 110.90450 * 323.27960 * 4 2 1 32 32 H 1.08994 * 110.90581 * 199.67228 * 4 2 1 33 33 H 1.09002 * 109.91835 * 26.48840 * 8 7 5 34 34 H 1.09001 * 109.91574 * 265.20133 * 8 7 5 35 35 H 1.09006 * 110.30565 * 239.85890 * 9 8 7 36 36 H 1.08998 * 110.39390 * 117.73239 * 9 8 7 37 37 H 0.97005 * 119.99400 * 0.02562 * 15 14 12 38 38 H 1.09000 * 110.66685 * 81.84524 * 20 7 5 39 39 H 1.09002 * 110.66678 * 318.71251 * 20 7 5 40 40 H 1.09003 * 109.46921 * 70.73304 * 22 21 5 41 41 H 1.09004 * 109.46990 * 190.72358 * 22 21 5 42 42 H 1.08995 * 109.47531 * 310.73244 * 22 21 5 43 43 H 1.09001 * 109.46575 * 53.49664 * 23 21 5 44 44 H 1.09003 * 109.46678 * 173.49198 * 23 21 5 45 45 H 1.08994 * 109.47373 * 293.49800 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0672 1.4326 0.0000 4 6 2.0758 -0.7875 1.2184 5 6 1.9800 -2.2525 0.7269 6 1 1.0729 -2.7234 1.1058 7 7 3.1655 -3.0133 1.1439 8 6 3.5057 -2.7327 2.5557 9 6 4.0698 -4.0356 3.1520 10 6 3.9969 -5.0693 2.0048 11 1 4.9549 -5.1425 1.4900 12 6 3.5704 -6.4169 2.5275 13 1 2.6563 -6.8692 2.1723 14 6 4.3472 -7.0722 3.4592 15 7 5.4606 -6.5216 3.8915 16 14 3.8181 -8.7423 4.1076 17 1 3.7228 -9.7037 2.9799 18 1 2.4932 -8.6202 4.7672 19 1 4.8180 -9.2310 5.0910 20 6 2.9125 -4.4751 1.0713 21 6 1.9283 -2.1331 -0.8086 22 6 3.0942 -2.9049 -1.4298 23 6 0.5995 -2.6848 -1.3288 24 8 2.0385 -0.7371 -1.1326 25 1 -0.3633 0.7162 0.7369 26 1 -0.3633 0.2801 -0.9888 27 1 -0.3633 -0.9963 0.2518 28 1 3.1558 1.4124 -0.0516 29 1 1.6724 1.9686 -0.8630 30 1 1.7561 1.9373 0.9146 31 1 1.4489 -0.6299 2.0959 32 1 3.1101 -0.5140 1.4267 33 1 2.6109 -2.4317 3.1006 34 1 4.2574 -1.9449 2.6070 35 1 3.4595 -4.3615 3.9942 36 1 5.1034 -3.8926 3.4673 37 1 5.7350 -5.6542 3.5550 38 1 3.0421 -4.8377 0.0515 39 1 1.9149 -4.7117 1.4411 40 1 2.9256 -3.9753 -1.3112 41 1 3.1655 -2.6637 -2.4905 42 1 4.0220 -2.6257 -0.9305 43 1 -0.2250 -2.1956 -0.8100 44 1 0.5204 -2.4928 -2.3989 45 1 0.5563 -3.7588 -1.1482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397653566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:00 Heat of formation + Delta-G solvation = -61.794059 kcal Electronic energy + Delta-G solvation = -22351.283583 eV Core-core repulsion = 19367.733406 eV Total energy + Delta-G solvation = -2983.550177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77077 -39.34163 -35.72878 -34.97654 -33.31585 -31.59192 -30.13852 -29.15516 -28.75852 -27.51905 -26.00202 -24.43225 -22.02640 -21.86665 -20.76095 -20.56096 -18.85506 -17.46762 -16.85148 -16.49558 -16.11190 -15.80212 -15.68155 -15.04558 -14.78851 -14.56501 -14.25901 -14.04033 -13.81813 -13.50768 -13.46566 -13.24436 -13.01608 -12.91908 -12.84218 -12.76161 -12.72497 -12.32406 -12.24347 -12.06608 -11.93188 -11.74845 -11.62818 -11.40134 -11.34530 -11.22894 -10.57683 -10.55821 -10.46350 -9.33304 -8.57786 -6.31653 1.53305 1.60662 1.79820 2.57349 2.77813 2.96154 3.21643 3.44830 3.71980 3.88502 3.95959 4.01112 4.09483 4.12458 4.17260 4.28544 4.37606 4.42586 4.45634 4.53785 4.67808 4.69771 4.73907 4.80244 4.81651 4.85214 4.87785 4.93887 4.97785 5.04082 5.06794 5.12488 5.17136 5.25977 5.29542 5.35213 5.40766 5.53805 5.62224 5.78024 6.12539 6.16592 6.19548 6.24520 6.66893 7.49275 8.80875 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033695 B = 0.004879 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.792915 B = 5737.814321 C = 6024.820895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 C -0.134 4.134 4 C -0.138 4.138 5 C 0.049 3.951 6 H 0.052 0.948 7 N -0.506 5.506 8 C 0.051 3.949 9 C -0.112 4.112 10 C 0.026 3.974 11 H -0.003 1.003 12 C -0.609 4.609 13 H 0.045 0.955 14 C -0.028 4.028 15 N -0.937 5.937 16 Si 1.112 2.888 17 H -0.272 1.272 18 H -0.272 1.272 19 H -0.286 1.286 20 C 0.059 3.941 21 C 0.113 3.887 22 C -0.131 4.131 23 C -0.167 4.167 24 O -0.374 6.374 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 13.819 -7.224 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.176 4.176 5 C -0.061 4.061 6 H 0.070 0.930 7 N -0.230 5.230 8 C -0.077 4.077 9 C -0.151 4.151 10 C 0.007 3.993 11 H 0.015 0.985 12 C -0.647 4.647 13 H 0.064 0.936 14 C -0.227 4.227 15 N -0.575 5.575 16 Si 0.934 3.066 17 H -0.197 1.197 18 H -0.197 1.197 19 H -0.211 1.211 20 C -0.068 4.068 21 C 0.073 3.927 22 C -0.189 4.189 23 C -0.225 4.225 24 O -0.294 6.294 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.987 12.875 -6.744 17.635 hybrid contribution -0.732 0.633 -0.217 0.991 sum -10.719 13.508 -6.961 18.596 Atomic orbital electron populations 1.22419 0.93656 1.02878 1.03401 1.22605 0.94282 0.93286 0.84386 1.21743 1.01263 0.92636 1.03484 1.23331 1.02715 0.92634 0.98911 1.23264 0.91889 0.95059 0.95844 0.92976 1.64864 1.33031 1.05086 1.20026 1.22749 0.99412 0.97253 0.88268 1.22404 0.98595 0.95300 0.98813 1.19656 0.93701 0.93585 0.92321 0.98520 1.22282 1.10212 1.04746 1.27490 0.93621 1.27150 0.93594 1.07132 0.94775 1.70898 1.23429 1.18896 1.44242 0.82995 0.75790 0.71438 0.76378 1.19730 1.19741 1.21110 1.23204 0.97063 0.86938 0.99566 1.21931 0.95856 0.82416 0.92461 1.21827 0.98250 0.99174 0.99619 1.22488 0.96463 1.01145 1.02378 1.88901 1.84267 1.16458 1.39788 0.89820 0.91346 0.92146 0.92726 0.91316 0.89341 0.89217 0.90377 0.93493 0.90373 0.94402 0.94344 0.92663 0.90497 0.95211 0.91800 0.92665 0.92164 0.90665 0.91287 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 7.94 71.98 0.57 -2.39 16 2 C 0.09 2.06 1.25 -10.11 -0.01 2.05 16 3 C -0.13 -2.42 8.98 71.98 0.65 -1.77 16 4 C -0.14 -3.41 4.41 31.90 0.14 -3.27 16 5 C 0.05 1.44 1.82 45.91 0.08 1.53 16 6 H 0.05 1.57 7.27 -2.38 -0.02 1.56 16 7 N -0.51 -18.23 3.48 -852.07 -2.97 -21.19 16 8 C 0.05 1.87 5.41 86.44 0.47 2.34 16 9 C -0.11 -5.25 5.34 31.47 0.17 -5.08 16 10 C 0.03 1.35 2.62 -10.34 -0.03 1.32 16 11 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 12 C -0.61 -34.11 8.42 25.60 0.22 -33.89 16 13 H 0.05 2.52 7.78 -2.91 -0.02 2.49 16 14 C -0.03 -1.58 5.33 84.65 0.45 -1.12 16 15 N -0.94 -56.95 13.42 21.45 0.29 -56.66 16 16 Si 1.11 50.00 29.90 68.60 2.05 52.05 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 20 C 0.06 2.48 5.35 86.65 0.46 2.94 16 21 C 0.11 3.18 1.13 -10.42 -0.01 3.17 16 22 C -0.13 -4.04 7.73 71.98 0.56 -3.48 16 23 C -0.17 -4.01 8.30 71.98 0.60 -3.41 16 24 O -0.37 -10.46 10.36 -148.98 -1.54 -12.01 16 25 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.13 5.22 -2.39 -0.01 1.12 16 28 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.92 8.05 -2.39 -0.02 1.90 16 32 H 0.08 2.09 7.08 -2.39 -0.02 2.07 16 33 H 0.05 1.58 7.35 -2.39 -0.02 1.57 16 34 H 0.08 2.67 7.75 -2.39 -0.02 2.65 16 35 H 0.04 1.89 7.84 -2.38 -0.02 1.88 16 36 H 0.04 1.87 6.96 -2.39 -0.02 1.85 16 37 H 0.26 16.03 5.53 -92.70 -0.51 15.52 16 38 H 0.08 3.10 5.55 -2.39 -0.01 3.09 16 39 H 0.03 1.26 7.64 -2.39 -0.02 1.24 16 40 H 0.06 2.01 5.52 -2.39 -0.01 2.00 16 41 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.06 2.09 7.21 -2.39 -0.02 2.07 16 43 H 0.07 1.60 5.00 -2.39 -0.01 1.59 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 Total: -1.00 -63.25 327.43 3.34 -59.91 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 1.20 Total: 18.98 kcal Atomic # 6 Polarization: -45.39 SS G_CDS: 4.31 Total: -41.08 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -2.68 Total: -77.86 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.54 Total: -12.01 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.05 kcal Total: -63.25 3.34 -59.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397653566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.880 kcal (2) G-P(sol) polarization free energy of solvation -63.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds