Wall clock time and date at job start Mon Mar 30 2020 07:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.67225 * 2 1 4 4 C 1.54987 * 110.62042 * 237.03326 * 2 1 3 5 5 C 1.54811 * 102.09509 * 278.52200 * 4 2 1 6 6 H 1.08997 * 110.60132 * 97.85210 * 5 4 2 7 7 N 1.46899 * 110.48895 * 220.44661 * 5 4 2 8 8 C 1.47845 * 110.99871 * 187.49589 * 7 5 4 9 9 C 1.54904 * 104.79518 * 146.36392 * 8 7 5 10 10 C 1.55137 * 101.65407 * 322.92756 * 9 8 7 11 11 H 1.09005 * 110.85990 * 277.20213 * 10 9 8 12 12 C 1.50699 * 110.70842 * 154.03553 * 10 9 8 13 13 H 1.08000 * 120.00640 * 246.40098 * 12 10 9 14 14 C 1.37889 * 119.99584 * 66.40502 * 12 10 9 15 15 N 1.31506 * 119.99808 * 359.72281 * 14 12 10 16 16 Si 1.86800 * 119.99474 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47081 * 269.71903 * 16 14 12 18 18 H 1.48498 * 109.47552 * 29.72387 * 16 14 12 19 19 H 1.48499 * 109.46769 * 149.72414 * 16 14 12 20 20 C 1.47437 * 111.00079 * 308.33715 * 7 5 4 21 21 C 1.54104 * 104.18530 * 339.12014 * 5 4 2 22 22 C 1.52999 * 109.88007 * 117.39523 * 21 5 4 23 23 C 1.53001 * 109.87999 * 238.54531 * 21 5 4 24 24 O 1.43748 * 107.29529 * 357.96771 * 21 5 4 25 25 H 1.08996 * 109.47290 * 282.96652 * 1 2 3 26 26 H 1.09002 * 109.47021 * 42.97242 * 1 2 3 27 27 H 1.09012 * 109.46894 * 162.96598 * 1 2 3 28 28 H 1.08999 * 109.47058 * 181.50870 * 3 2 1 29 29 H 1.08999 * 109.47441 * 301.50821 * 3 2 1 30 30 H 1.09004 * 109.47368 * 61.50868 * 3 2 1 31 31 H 1.09000 * 110.91097 * 160.32377 * 4 2 1 32 32 H 1.08997 * 110.91286 * 36.72304 * 4 2 1 33 33 H 1.09002 * 110.37490 * 265.19078 * 8 7 5 34 34 H 1.08993 * 110.37470 * 27.42131 * 8 7 5 35 35 H 1.09003 * 110.99381 * 204.83827 * 9 8 7 36 36 H 1.09004 * 110.99548 * 81.02193 * 9 8 7 37 37 H 0.96996 * 120.00837 * 0.27596 * 15 14 12 38 38 H 1.09000 * 109.89341 * 117.33397 * 20 7 5 39 39 H 1.09000 * 109.88932 * 356.14900 * 20 7 5 40 40 H 1.08995 * 109.47238 * 67.62648 * 22 21 5 41 41 H 1.09001 * 109.47103 * 187.63198 * 22 21 5 42 42 H 1.09000 * 109.46604 * 307.62853 * 22 21 5 43 43 H 1.09011 * 109.46909 * 44.28335 * 23 21 5 44 44 H 1.08995 * 109.47178 * 164.27958 * 23 21 5 45 45 H 1.09000 * 109.47264 * 284.28328 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4315 0.0000 4 6 2.0758 -0.7893 -1.2170 5 6 1.9801 -2.2535 -0.7234 6 1 1.0729 -2.7265 -1.0994 7 7 3.1656 -3.0148 -1.1391 8 6 3.0070 -4.4522 -0.8314 9 6 3.7535 -5.1859 -1.9733 10 6 3.4210 -4.2871 -3.1933 11 1 2.4444 -4.5392 -3.6065 12 6 4.4903 -4.4044 -4.2487 13 1 5.1152 -3.5547 -4.4813 14 6 4.6708 -5.5965 -4.9177 15 7 3.9135 -6.6327 -4.6307 16 14 5.9967 -5.7421 -6.2254 17 1 5.4289 -5.3787 -7.5486 18 1 7.1173 -4.8242 -5.8986 19 1 6.4979 -7.1393 -6.2687 20 6 3.4070 -2.8684 -2.5862 21 6 1.9284 -2.1318 0.8120 22 6 0.5995 -2.6827 1.3330 23 6 3.0942 -2.9026 1.4345 24 8 2.0384 -0.7352 1.1339 25 1 -0.3633 0.2306 1.0014 26 1 -0.3633 0.7519 -0.7005 27 1 -0.3633 -0.9827 -0.3011 28 1 3.1595 1.4088 -0.0271 29 1 1.6959 1.9611 -0.8761 30 1 1.7397 1.9445 0.9032 31 1 3.1101 -0.5161 -1.4258 32 1 1.4490 -0.6331 -2.0949 33 1 3.4616 -4.6866 0.1311 34 1 1.9519 -4.7254 -0.8286 35 1 3.3612 -6.1934 -2.1122 36 1 4.8271 -5.2090 -1.7864 37 1 3.2253 -6.5572 -3.9514 38 1 4.3685 -2.3834 -2.7547 39 1 2.6083 -2.2798 -3.0377 40 1 0.5647 -3.7602 1.1721 41 1 0.5115 -2.4715 2.3988 42 1 -0.2244 -2.2089 0.7995 43 1 4.0076 -2.6917 0.8781 44 1 3.2213 -2.5935 2.4720 45 1 2.8845 -3.9716 1.3969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397653571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:03 Heat of formation + Delta-G solvation = -42.054852 kcal Electronic energy + Delta-G solvation = -22367.753495 eV Core-core repulsion = 19385.059274 eV Total energy + Delta-G solvation = -2982.694220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.63084 -37.80314 -34.32739 -33.44250 -31.82482 -30.36677 -28.75842 -27.71926 -27.36125 -26.54494 -24.23621 -22.92674 -20.55392 -20.31825 -19.45878 -19.29440 -16.96932 -16.06573 -15.76349 -15.12469 -14.83022 -14.52287 -13.78715 -13.75820 -13.39367 -13.17239 -12.91548 -12.73075 -12.54700 -12.22869 -12.14214 -12.05321 -11.83260 -11.71205 -11.60043 -11.44445 -11.06241 -10.83464 -10.81195 -10.61994 -10.47326 -10.30561 -10.14217 -10.10416 -9.76674 -9.63153 -9.39939 -8.49770 -8.34929 -7.70619 -6.34844 -4.06526 3.42862 3.46512 3.62149 3.81875 4.36403 4.52825 4.60938 4.76082 4.90023 5.05693 5.12732 5.24993 5.32977 5.36923 5.46142 5.51408 5.55354 5.61341 5.69235 5.74177 5.78784 5.88849 5.90498 5.96415 5.99562 6.04658 6.10800 6.15728 6.18181 6.20222 6.26318 6.32619 6.47141 6.68809 6.72631 6.90933 6.96454 7.17642 7.23522 7.40244 7.67231 7.74239 8.22227 8.42980 8.87276 9.65048 11.03294 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030721 B = 0.004998 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.198158 B = 5600.468049 C = 6045.449794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 C -0.136 4.136 4 C -0.137 4.137 5 C 0.058 3.942 6 H 0.049 0.951 7 N -0.516 5.516 8 C 0.030 3.970 9 C -0.120 4.120 10 C 0.019 3.981 11 H 0.019 0.981 12 C -0.589 4.589 13 H 0.050 0.950 14 C 0.020 3.980 15 N -0.914 5.914 16 Si 1.069 2.931 17 H -0.289 1.289 18 H -0.288 1.288 19 H -0.285 1.285 20 C 0.055 3.945 21 C 0.111 3.889 22 C -0.171 4.171 23 C -0.142 4.142 24 O -0.358 6.358 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.031 0.969 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.270 0.730 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.387 10.996 10.391 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.058 3.942 3 C -0.193 4.193 4 C -0.175 4.175 5 C -0.052 4.052 6 H 0.066 0.934 7 N -0.240 5.240 8 C -0.097 4.097 9 C -0.158 4.158 10 C -0.001 4.001 11 H 0.037 0.963 12 C -0.628 4.628 13 H 0.069 0.931 14 C -0.184 4.184 15 N -0.550 5.550 16 Si 0.898 3.102 17 H -0.216 1.216 18 H -0.215 1.215 19 H -0.211 1.211 20 C -0.071 4.071 21 C 0.071 3.929 22 C -0.228 4.228 23 C -0.199 4.199 24 O -0.278 6.278 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.066 0.934 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.195 10.240 9.780 15.083 hybrid contribution -1.665 0.615 0.432 1.827 sum -6.860 10.855 10.212 16.406 Atomic orbital electron populations 1.22432 0.95317 1.02402 1.02449 1.22388 0.92960 0.92917 0.85956 1.21722 1.01909 0.93634 1.02041 1.23275 1.02909 0.93841 0.97468 1.23120 0.93034 0.94487 0.94523 0.93354 1.63722 1.33903 1.08778 1.17605 1.23408 0.98350 0.87754 1.00186 1.22882 0.99720 0.98540 0.94705 1.19969 0.96964 0.89834 0.93301 0.96327 1.21921 1.18982 1.00066 1.21786 0.93128 1.25783 1.00477 0.92336 0.99839 1.70770 1.20114 1.31559 1.32554 0.83532 0.75351 0.75860 0.75445 1.21570 1.21453 1.21059 1.22877 0.99895 0.99524 0.84841 1.21974 0.95227 0.82318 0.93408 1.22523 0.97324 1.01144 1.01823 1.22131 0.99084 0.98966 0.99762 1.88915 1.83760 1.16398 1.38684 0.91772 0.91801 0.91830 0.91666 0.91393 0.92098 0.89289 0.90776 0.90521 0.95033 0.92255 0.91672 0.91801 0.91090 0.94669 0.91927 0.92004 0.91963 0.89525 0.93443 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 7.88 37.16 0.29 -1.54 16 2 C 0.10 1.24 1.25 -89.57 -0.11 1.12 16 3 C -0.14 -1.47 8.96 37.16 0.33 -1.14 16 4 C -0.14 -1.96 4.26 -24.73 -0.11 -2.07 16 5 C 0.06 0.92 1.66 -66.18 -0.11 0.81 16 6 H 0.05 0.79 7.41 -51.93 -0.38 0.41 16 7 N -0.52 -9.44 3.53 -221.48 -0.78 -10.22 16 8 C 0.03 0.56 5.31 -2.30 -0.01 0.55 16 9 C -0.12 -2.71 5.86 -24.60 -0.14 -2.85 16 10 C 0.02 0.46 2.43 -89.95 -0.22 0.24 16 11 H 0.02 0.50 7.92 -51.93 -0.41 0.09 16 12 C -0.59 -16.26 8.47 -34.44 -0.29 -16.56 16 13 H 0.05 1.40 7.53 -52.49 -0.40 1.00 16 14 C 0.02 0.56 5.36 -17.82 -0.10 0.46 16 15 N -0.91 -27.08 13.48 55.43 0.75 -26.33 16 16 Si 1.07 25.03 29.90 -169.99 -5.08 19.94 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.06 1.16 5.61 -2.84 -0.02 1.14 16 21 C 0.11 1.60 1.09 -90.04 -0.10 1.50 16 22 C -0.17 -2.14 8.27 37.16 0.31 -1.83 16 23 C -0.14 -2.08 7.29 37.16 0.27 -1.81 16 24 O -0.36 -5.34 10.35 -35.23 -0.36 -5.71 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 27 H 0.06 0.71 5.40 -51.92 -0.28 0.43 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.38 7.61 -51.93 -0.40 0.98 16 32 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 33 H 0.08 1.29 5.40 -51.93 -0.28 1.01 16 34 H 0.03 0.57 7.63 -51.93 -0.40 0.17 16 35 H 0.06 1.40 6.76 -51.93 -0.35 1.05 16 36 H 0.06 1.56 8.04 -51.93 -0.42 1.14 16 37 H 0.27 7.92 5.58 -40.82 -0.23 7.69 16 38 H 0.07 1.56 7.63 -51.93 -0.40 1.17 16 39 H 0.03 0.70 6.62 -51.93 -0.34 0.35 16 40 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.73 5.10 -51.93 -0.26 0.47 16 43 H 0.09 1.43 6.86 -51.92 -0.36 1.07 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.97 5.50 -51.93 -0.29 0.68 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -29.19 326.14 -8.33 -37.52 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.77 Total: 1.85 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 0.00 Total: -21.97 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.03 Total: -36.56 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.36 Total: -5.71 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.19 -8.33 -37.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397653571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.531 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds