Wall clock time and date at job start Mon Mar 30 2020 07:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.67225 * 2 1 4 4 C 1.54987 * 110.62042 * 237.03326 * 2 1 3 5 5 C 1.54811 * 102.09509 * 278.52200 * 4 2 1 6 6 H 1.08997 * 110.60132 * 97.85210 * 5 4 2 7 7 N 1.46899 * 110.48895 * 220.44661 * 5 4 2 8 8 C 1.47845 * 110.99871 * 187.49589 * 7 5 4 9 9 C 1.54904 * 104.79518 * 146.36392 * 8 7 5 10 10 C 1.55137 * 101.65407 * 322.92756 * 9 8 7 11 11 H 1.09005 * 110.85990 * 277.20213 * 10 9 8 12 12 C 1.50699 * 110.70842 * 154.03553 * 10 9 8 13 13 H 1.08000 * 120.00640 * 246.40098 * 12 10 9 14 14 C 1.37889 * 119.99584 * 66.40502 * 12 10 9 15 15 N 1.31506 * 119.99808 * 359.72281 * 14 12 10 16 16 Si 1.86800 * 119.99474 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47081 * 269.71903 * 16 14 12 18 18 H 1.48498 * 109.47552 * 29.72387 * 16 14 12 19 19 H 1.48499 * 109.46769 * 149.72414 * 16 14 12 20 20 C 1.47437 * 111.00079 * 308.33715 * 7 5 4 21 21 C 1.54104 * 104.18530 * 339.12014 * 5 4 2 22 22 C 1.52999 * 109.88007 * 117.39523 * 21 5 4 23 23 C 1.53001 * 109.87999 * 238.54531 * 21 5 4 24 24 O 1.43748 * 107.29529 * 357.96771 * 21 5 4 25 25 H 1.08996 * 109.47290 * 282.96652 * 1 2 3 26 26 H 1.09002 * 109.47021 * 42.97242 * 1 2 3 27 27 H 1.09012 * 109.46894 * 162.96598 * 1 2 3 28 28 H 1.08999 * 109.47058 * 181.50870 * 3 2 1 29 29 H 1.08999 * 109.47441 * 301.50821 * 3 2 1 30 30 H 1.09004 * 109.47368 * 61.50868 * 3 2 1 31 31 H 1.09000 * 110.91097 * 160.32377 * 4 2 1 32 32 H 1.08997 * 110.91286 * 36.72304 * 4 2 1 33 33 H 1.09002 * 110.37490 * 265.19078 * 8 7 5 34 34 H 1.08993 * 110.37470 * 27.42131 * 8 7 5 35 35 H 1.09003 * 110.99381 * 204.83827 * 9 8 7 36 36 H 1.09004 * 110.99548 * 81.02193 * 9 8 7 37 37 H 0.96996 * 120.00837 * 0.27596 * 15 14 12 38 38 H 1.09000 * 109.89341 * 117.33397 * 20 7 5 39 39 H 1.09000 * 109.88932 * 356.14900 * 20 7 5 40 40 H 1.08995 * 109.47238 * 67.62648 * 22 21 5 41 41 H 1.09001 * 109.47103 * 187.63198 * 22 21 5 42 42 H 1.09000 * 109.46604 * 307.62853 * 22 21 5 43 43 H 1.09011 * 109.46909 * 44.28335 * 23 21 5 44 44 H 1.08995 * 109.47178 * 164.27958 * 23 21 5 45 45 H 1.09000 * 109.47264 * 284.28328 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4315 0.0000 4 6 2.0758 -0.7893 -1.2170 5 6 1.9801 -2.2535 -0.7234 6 1 1.0729 -2.7265 -1.0994 7 7 3.1656 -3.0148 -1.1391 8 6 3.0070 -4.4522 -0.8314 9 6 3.7535 -5.1859 -1.9733 10 6 3.4210 -4.2871 -3.1933 11 1 2.4444 -4.5392 -3.6065 12 6 4.4903 -4.4044 -4.2487 13 1 5.1152 -3.5547 -4.4813 14 6 4.6708 -5.5965 -4.9177 15 7 3.9135 -6.6327 -4.6307 16 14 5.9967 -5.7421 -6.2254 17 1 5.4289 -5.3787 -7.5486 18 1 7.1173 -4.8242 -5.8986 19 1 6.4979 -7.1393 -6.2687 20 6 3.4070 -2.8684 -2.5862 21 6 1.9284 -2.1318 0.8120 22 6 0.5995 -2.6827 1.3330 23 6 3.0942 -2.9026 1.4345 24 8 2.0384 -0.7352 1.1339 25 1 -0.3633 0.2306 1.0014 26 1 -0.3633 0.7519 -0.7005 27 1 -0.3633 -0.9827 -0.3011 28 1 3.1595 1.4088 -0.0271 29 1 1.6959 1.9611 -0.8761 30 1 1.7397 1.9445 0.9032 31 1 3.1101 -0.5161 -1.4258 32 1 1.4490 -0.6331 -2.0949 33 1 3.4616 -4.6866 0.1311 34 1 1.9519 -4.7254 -0.8286 35 1 3.3612 -6.1934 -2.1122 36 1 4.8271 -5.2090 -1.7864 37 1 3.2253 -6.5572 -3.9514 38 1 4.3685 -2.3834 -2.7547 39 1 2.6083 -2.2798 -3.0377 40 1 0.5647 -3.7602 1.1721 41 1 0.5115 -2.4715 2.3988 42 1 -0.2244 -2.2089 0.7995 43 1 4.0076 -2.6917 0.8781 44 1 3.2213 -2.5935 2.4720 45 1 2.8845 -3.9716 1.3969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397653571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:03 Heat of formation + Delta-G solvation = -58.788344 kcal Electronic energy + Delta-G solvation = -22368.479113 eV Core-core repulsion = 19385.059274 eV Total energy + Delta-G solvation = -2983.419839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.82830 -39.35951 -35.78993 -34.89092 -33.31329 -31.65805 -30.38582 -28.85190 -28.73920 -27.56033 -26.19618 -24.29628 -22.03488 -21.81278 -20.84539 -20.61867 -19.01694 -17.32469 -17.07003 -16.47845 -16.01595 -15.85588 -15.62702 -15.07900 -14.74393 -14.45112 -14.19143 -14.01809 -13.79675 -13.64753 -13.37925 -13.33098 -13.05401 -13.00710 -12.85279 -12.78521 -12.61279 -12.32537 -12.22662 -12.06574 -11.94569 -11.71070 -11.62922 -11.48823 -11.35524 -11.30597 -10.60786 -10.51676 -10.46464 -9.23615 -8.59687 -6.32001 1.52901 1.61125 1.78842 2.56888 2.76331 2.94605 3.19667 3.45123 3.70808 3.88491 3.94870 4.00579 4.10579 4.13147 4.15310 4.32174 4.36050 4.39667 4.44155 4.53464 4.67382 4.70098 4.74322 4.77362 4.82740 4.85993 4.86436 4.94028 4.98040 5.03443 5.05556 5.13346 5.18234 5.27611 5.28996 5.34973 5.38344 5.48309 5.53476 5.96332 6.09215 6.16330 6.20160 6.23672 6.65268 7.47276 8.79203 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030721 B = 0.004998 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.198158 B = 5600.468049 C = 6045.449794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 C -0.134 4.134 4 C -0.138 4.138 5 C 0.053 3.947 6 H 0.047 0.953 7 N -0.514 5.514 8 C 0.043 3.957 9 C -0.113 4.113 10 C 0.009 3.991 11 H -0.007 1.007 12 C -0.603 4.603 13 H 0.045 0.955 14 C -0.028 4.028 15 N -0.937 5.937 16 Si 1.114 2.886 17 H -0.275 1.275 18 H -0.273 1.273 19 H -0.284 1.284 20 C 0.070 3.930 21 C 0.112 3.888 22 C -0.167 4.167 23 C -0.141 4.141 24 O -0.373 6.373 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.261 0.739 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.047 12.303 11.158 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.057 3.943 3 C -0.192 4.192 4 C -0.176 4.176 5 C -0.056 4.056 6 H 0.064 0.936 7 N -0.238 5.238 8 C -0.084 4.084 9 C -0.152 4.152 10 C -0.011 4.011 11 H 0.011 0.989 12 C -0.641 4.641 13 H 0.063 0.937 14 C -0.227 4.227 15 N -0.575 5.575 16 Si 0.937 3.063 17 H -0.200 1.200 18 H -0.198 1.198 19 H -0.210 1.210 20 C -0.057 4.057 21 C 0.072 3.928 22 C -0.225 4.225 23 C -0.198 4.198 24 O -0.293 6.293 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.870 11.570 10.565 16.731 hybrid contribution -1.476 0.249 0.210 1.511 sum -7.345 11.819 10.775 17.599 Atomic orbital electron populations 1.22402 0.93603 1.02816 1.03411 1.22573 0.94244 0.93268 0.84234 1.21748 1.01263 0.92710 1.03439 1.23283 1.02365 0.93159 0.98755 1.23243 0.91529 0.94873 0.95947 0.93551 1.63731 1.35793 1.08798 1.15513 1.23342 0.98404 0.87273 0.99346 1.22671 0.98948 0.97876 0.95685 1.19970 0.94740 0.92736 0.93634 0.98913 1.22277 1.19416 0.99875 1.22557 0.93687 1.27156 1.01826 0.92112 1.01594 1.70879 1.20993 1.32405 1.33236 0.82953 0.73503 0.76123 0.73731 1.20048 1.19815 1.21003 1.22591 0.99603 0.97044 0.86456 1.21977 0.96214 0.82538 0.92073 1.22488 0.96269 1.01273 1.02423 1.22085 0.98262 0.99417 1.00037 1.88902 1.84280 1.16547 1.39547 0.91098 0.89993 0.92282 0.92734 0.89533 0.91138 0.90803 0.89966 0.88320 0.94102 0.93854 0.93490 0.92866 0.92441 0.93779 0.91624 0.91076 0.91132 0.91650 0.92487 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 7.88 71.98 0.57 -2.53 16 2 C 0.10 2.22 1.25 -10.11 -0.01 2.21 16 3 C -0.13 -2.60 8.96 71.98 0.64 -1.96 16 4 C -0.14 -3.75 4.26 31.89 0.14 -3.61 16 5 C 0.05 1.61 1.66 45.91 0.08 1.69 16 6 H 0.05 1.44 7.41 -2.39 -0.02 1.43 16 7 N -0.51 -18.57 3.53 -854.62 -3.02 -21.59 16 8 C 0.04 1.58 5.31 86.77 0.46 2.04 16 9 C -0.11 -5.23 5.86 31.98 0.19 -5.04 16 10 C 0.01 0.43 2.43 -10.36 -0.03 0.41 16 11 H -0.01 -0.40 7.92 -2.38 -0.02 -0.42 16 12 C -0.60 -33.96 8.47 25.60 0.22 -33.75 16 13 H 0.04 2.52 7.53 -2.91 -0.02 2.50 16 14 C -0.03 -1.62 5.36 84.66 0.45 -1.17 16 15 N -0.94 -56.74 13.48 21.45 0.29 -56.45 16 16 Si 1.11 50.40 29.90 68.60 2.05 52.46 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 C 0.07 2.97 5.61 86.65 0.49 3.46 16 21 C 0.11 3.02 1.09 -10.42 -0.01 3.01 16 22 C -0.17 -3.76 8.27 71.98 0.59 -3.16 16 23 C -0.14 -3.89 7.29 71.98 0.52 -3.36 16 24 O -0.37 -10.36 10.35 -148.98 -1.54 -11.90 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.24 8.06 -2.39 -0.02 1.22 16 27 H 0.06 1.16 5.40 -2.38 -0.01 1.15 16 28 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.07 2.24 7.61 -2.39 -0.02 2.22 16 32 H 0.08 2.08 7.89 -2.39 -0.02 2.06 16 33 H 0.10 3.19 5.40 -2.39 -0.01 3.18 16 34 H 0.04 1.42 7.63 -2.39 -0.02 1.40 16 35 H 0.04 2.11 6.76 -2.39 -0.02 2.09 16 36 H 0.05 2.30 8.04 -2.39 -0.02 2.28 16 37 H 0.26 15.80 5.58 -92.71 -0.52 15.28 16 38 H 0.06 2.57 7.63 -2.39 -0.02 2.55 16 39 H 0.04 1.75 6.62 -2.39 -0.02 1.74 16 40 H 0.06 1.43 8.07 -2.39 -0.02 1.41 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.47 5.10 -2.39 -0.01 1.46 16 43 H 0.06 2.09 6.86 -2.38 -0.02 2.07 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.95 5.50 -2.39 -0.01 1.94 16 Total: -1.00 -63.13 326.14 3.28 -59.85 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 1.20 Total: 19.40 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 4.30 Total: -41.77 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -2.73 Total: -78.04 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.54 Total: -11.90 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.46 kcal Total: -63.13 3.28 -59.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397653571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.066 kcal (2) G-P(sol) polarization free energy of solvation -63.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds