Wall clock time and date at job start Mon Mar 30 2020 07:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.67354 * 2 1 4 4 C 1.54995 * 110.61256 * 122.95822 * 2 1 3 5 5 C 1.54815 * 102.12345 * 155.54465 * 4 2 1 6 6 H 1.09000 * 110.48608 * 97.77831 * 5 4 2 7 7 N 1.46903 * 110.48537 * 220.29390 * 5 4 2 8 8 C 1.47447 * 110.99724 * 193.70948 * 7 5 4 9 9 C 1.54313 * 107.23500 * 123.25598 * 8 7 5 10 10 C 1.55145 * 103.01793 * 22.28709 * 9 8 7 11 11 H 1.08994 * 110.99389 * 82.47656 * 10 9 8 12 12 C 1.50703 * 110.98711 * 206.25557 * 10 9 8 13 13 H 1.08005 * 120.00266 * 118.54807 * 12 10 9 14 14 C 1.37874 * 119.99924 * 298.53879 * 12 10 9 15 15 N 1.31517 * 120.00298 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99991 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47032 * 60.00067 * 16 14 12 18 18 H 1.48498 * 109.47269 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.47079 * 300.00155 * 16 14 12 20 20 C 1.47839 * 111.00134 * 314.54899 * 7 5 4 21 21 C 1.54101 * 104.18652 * 339.10330 * 5 4 2 22 22 C 1.52992 * 109.87608 * 117.39377 * 21 5 4 23 23 C 1.53001 * 109.87503 * 238.54462 * 21 5 4 24 24 O 1.43747 * 107.29188 * 357.97081 * 21 5 4 25 25 H 1.08990 * 109.47727 * 297.04040 * 1 2 3 26 26 H 1.09005 * 109.46454 * 57.03959 * 1 2 3 27 27 H 1.09002 * 109.47008 * 177.03789 * 1 2 3 28 28 H 1.09002 * 109.46730 * 167.99554 * 3 2 1 29 29 H 1.09001 * 109.46951 * 287.99218 * 3 2 1 30 30 H 1.09004 * 109.47542 * 47.99981 * 3 2 1 31 31 H 1.09003 * 110.90776 * 37.32958 * 4 2 1 32 32 H 1.08998 * 110.91199 * 273.75912 * 4 2 1 33 33 H 1.09003 * 109.88870 * 242.66574 * 8 7 5 34 34 H 1.09009 * 109.88774 * 3.68778 * 8 7 5 35 35 H 1.09000 * 110.70475 * 140.66578 * 9 8 7 36 36 H 1.09002 * 110.70685 * 263.72744 * 9 8 7 37 37 H 0.97001 * 120.00325 * 179.97438 * 15 14 12 38 38 H 1.09006 * 110.37556 * 332.46777 * 20 7 5 39 39 H 1.09000 * 110.37628 * 94.81001 * 20 7 5 40 40 H 1.09003 * 109.47625 * 66.69174 * 22 21 5 41 41 H 1.09012 * 109.46993 * 186.68662 * 22 21 5 42 42 H 1.08997 * 109.47833 * 306.68221 * 22 21 5 43 43 H 1.09002 * 109.47058 * 52.60670 * 23 21 5 44 44 H 1.09003 * 109.46663 * 172.60496 * 23 21 5 45 45 H 1.09000 * 109.47379 * 292.60372 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0702 1.4315 0.0000 4 6 2.0757 -0.7892 1.2173 5 6 3.4798 -1.2167 0.7247 6 1 4.2406 -0.5329 1.1011 7 7 3.7746 -2.5933 1.1441 8 6 5.2065 -2.9020 0.9748 9 6 5.7440 -3.3476 2.3510 10 6 4.4628 -3.8111 3.0932 11 1 4.2001 -4.8325 2.8181 12 6 4.6272 -3.6823 4.5856 13 1 3.9758 -3.0282 5.1463 14 6 5.6091 -4.3995 5.2355 15 7 6.4026 -5.1958 4.5528 16 14 5.8124 -4.2404 7.0856 17 1 4.5571 -4.6590 7.7593 18 1 6.9301 -5.1077 7.5372 19 1 6.1122 -2.8275 7.4309 20 6 3.4120 -2.8045 2.5617 21 6 3.3851 -1.1261 -0.8107 22 6 4.3699 -0.0774 -1.3316 23 6 3.6953 -2.4893 -1.4323 24 8 2.0398 -0.7362 -1.1336 25 1 -0.3634 0.4671 0.9152 26 1 -0.3632 0.5592 -0.8623 27 1 -0.3633 -1.0263 -0.0531 28 1 3.1389 1.4164 0.2138 29 1 1.9014 1.8834 -0.9774 30 1 1.5551 2.0143 0.7637 31 1 1.4548 -1.6605 1.4260 32 1 2.1502 -0.1476 2.0952 33 1 5.3291 -3.7071 0.2503 34 1 5.7397 -2.0138 0.6356 35 1 6.4461 -4.1742 2.2412 36 1 6.2127 -2.5120 2.8707 37 1 7.0937 -5.7001 5.0100 38 1 3.4728 -1.8661 3.1129 39 1 2.4099 -3.2264 2.6383 40 1 5.3903 -0.4176 -1.1547 41 1 4.2152 0.0668 -2.4010 42 1 4.2058 0.8657 -0.8104 43 1 3.0639 -3.2501 -0.9732 44 1 3.4995 -2.4529 -2.5040 45 1 4.7433 -2.7361 -1.2626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397653578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:09 Heat of formation + Delta-G solvation = -44.396403 kcal Electronic energy + Delta-G solvation = -22330.911805 eV Core-core repulsion = 19348.116047 eV Total energy + Delta-G solvation = -2982.795758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.51859 -37.59507 -34.15605 -33.20125 -31.81746 -30.27976 -28.73740 -27.77956 -27.22338 -26.49509 -24.63330 -22.73321 -20.42472 -20.15916 -19.34681 -19.05290 -16.46892 -16.06059 -15.58232 -14.92183 -14.82635 -14.46612 -14.06545 -13.72536 -13.37784 -13.05094 -12.71259 -12.60566 -12.35366 -12.22341 -12.14109 -11.91753 -11.82732 -11.67795 -11.62784 -11.24249 -11.02340 -10.88910 -10.73511 -10.59066 -10.54416 -10.31079 -10.23661 -9.99219 -9.63627 -9.47469 -9.18139 -8.84620 -8.40766 -7.59453 -6.03926 -4.07546 3.29561 3.34657 3.36805 3.88892 4.37517 4.51812 4.69097 4.83434 4.96259 5.11386 5.20355 5.29177 5.36933 5.42187 5.52318 5.56495 5.61618 5.69139 5.74920 5.80131 5.86560 5.98561 6.02104 6.09465 6.11414 6.14904 6.21779 6.25289 6.28721 6.34358 6.39217 6.51002 6.54773 6.79167 6.83410 7.12187 7.17210 7.25905 7.63394 7.68469 7.76175 7.87377 8.00534 8.40472 8.94104 9.56807 11.05526 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028666 B = 0.005126 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.537038 B = 5460.650674 C = 5964.768627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.097 3.903 3 C -0.170 4.170 4 C -0.139 4.139 5 C 0.060 3.940 6 H 0.050 0.950 7 N -0.519 5.519 8 C 0.037 3.963 9 C -0.117 4.117 10 C 0.049 3.951 11 H 0.036 0.964 12 C -0.516 4.516 13 H 0.054 0.946 14 C 0.065 3.935 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.049 3.951 21 C 0.109 3.891 22 C -0.171 4.171 23 C -0.131 4.131 24 O -0.359 6.359 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.260 0.740 38 H 0.035 0.965 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.433 10.460 -10.017 15.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 C -0.227 4.227 4 C -0.177 4.177 5 C -0.050 4.050 6 H 0.068 0.932 7 N -0.243 5.243 8 C -0.090 4.090 9 C -0.156 4.156 10 C 0.030 3.970 11 H 0.054 0.946 12 C -0.554 4.554 13 H 0.073 0.927 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.078 4.078 21 C 0.070 3.930 22 C -0.229 4.229 23 C -0.188 4.188 24 O -0.279 6.279 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.681 9.958 -10.512 15.947 hybrid contribution 0.915 0.764 1.738 2.107 sum -5.766 10.722 -8.774 15.007 Atomic orbital electron populations 1.21713 0.92754 1.02883 1.01941 1.22397 0.94534 0.91257 0.86060 1.22449 1.01865 0.96104 1.02287 1.23290 0.96370 1.00564 0.97470 1.23107 0.96358 0.91212 0.94307 0.93230 1.63698 1.18498 1.20150 1.21945 1.23026 0.87276 0.98904 0.99785 1.22692 1.00548 1.00261 0.92102 1.19720 0.89066 0.93850 0.94348 0.94563 1.20997 1.16430 1.26084 0.91908 0.92745 1.24953 0.95755 0.95014 0.98002 1.69951 1.19595 1.27555 1.35491 0.86690 0.77690 0.77940 0.85849 1.20228 1.21290 1.20392 1.23150 0.99991 0.99317 0.85356 1.22010 0.82589 0.94816 0.93623 1.22546 0.99212 0.99374 1.01748 1.21846 1.02598 0.95531 0.98828 1.88917 1.27609 1.72602 1.38758 0.91410 0.92225 0.91642 0.91612 0.91919 0.91846 0.89303 0.90751 0.91564 0.94664 0.90861 0.93562 0.92978 0.94637 0.92185 0.91918 0.92113 0.91889 0.90250 0.93793 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.99 37.16 0.33 -1.16 16 2 C 0.10 1.25 1.25 -89.57 -0.11 1.14 16 3 C -0.17 -1.88 8.02 37.16 0.30 -1.58 16 4 C -0.14 -2.01 4.46 -24.72 -0.11 -2.12 16 5 C 0.06 0.95 1.62 -66.18 -0.11 0.85 16 6 H 0.05 0.82 7.36 -51.93 -0.38 0.44 16 7 N -0.52 -9.55 3.60 -221.46 -0.80 -10.34 16 8 C 0.04 0.71 4.90 -2.84 -0.01 0.69 16 9 C -0.12 -2.70 5.64 -24.91 -0.14 -2.84 16 10 C 0.05 1.21 2.96 -89.63 -0.27 0.95 16 11 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 12 C -0.52 -13.97 8.55 -34.44 -0.29 -14.26 16 13 H 0.05 1.45 7.79 -52.48 -0.41 1.04 16 14 C 0.06 1.78 5.34 -17.82 -0.10 1.68 16 15 N -0.89 -25.20 12.12 55.43 0.67 -24.53 16 16 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.05 1.01 4.87 -2.30 -0.01 1.00 16 21 C 0.11 1.61 1.12 -90.05 -0.10 1.50 16 22 C -0.17 -2.18 8.30 37.15 0.31 -1.87 16 23 C -0.13 -1.95 7.63 37.16 0.28 -1.67 16 24 O -0.36 -5.43 10.36 -35.23 -0.36 -5.80 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.75 5.09 -51.93 -0.26 0.49 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 31 H 0.09 1.38 7.14 -51.93 -0.37 1.01 16 32 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 33 H 0.07 1.21 7.11 -51.93 -0.37 0.84 16 34 H 0.03 0.61 7.40 -51.92 -0.38 0.23 16 35 H 0.07 1.82 7.54 -51.93 -0.39 1.43 16 36 H 0.05 1.11 8.04 -51.93 -0.42 0.69 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.04 0.74 7.35 -51.93 -0.38 0.36 16 39 H 0.06 1.22 7.78 -51.93 -0.40 0.82 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.06 0.75 4.97 -51.93 -0.26 0.49 16 43 H 0.08 1.32 7.40 -51.93 -0.38 0.93 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.00 5.70 -51.93 -0.30 0.71 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -27.87 330.84 -8.62 -36.48 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.07 Total: 0.82 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -0.03 Total: -17.68 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.12 Total: -34.88 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.36 Total: -5.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.87 -8.62 -36.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397653578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.912 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds