Wall clock time and date at job start Mon Mar 30 2020 07:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.67354 * 2 1 4 4 C 1.54995 * 110.61256 * 122.95822 * 2 1 3 5 5 C 1.54815 * 102.12345 * 155.54465 * 4 2 1 6 6 H 1.09000 * 110.48608 * 97.77831 * 5 4 2 7 7 N 1.46903 * 110.48537 * 220.29390 * 5 4 2 8 8 C 1.47447 * 110.99724 * 193.70948 * 7 5 4 9 9 C 1.54313 * 107.23500 * 123.25598 * 8 7 5 10 10 C 1.55145 * 103.01793 * 22.28709 * 9 8 7 11 11 H 1.08994 * 110.99389 * 82.47656 * 10 9 8 12 12 C 1.50703 * 110.98711 * 206.25557 * 10 9 8 13 13 H 1.08005 * 120.00266 * 118.54807 * 12 10 9 14 14 C 1.37874 * 119.99924 * 298.53879 * 12 10 9 15 15 N 1.31517 * 120.00298 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99991 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47032 * 60.00067 * 16 14 12 18 18 H 1.48498 * 109.47269 * 180.02562 * 16 14 12 19 19 H 1.48509 * 109.47079 * 300.00155 * 16 14 12 20 20 C 1.47839 * 111.00134 * 314.54899 * 7 5 4 21 21 C 1.54101 * 104.18652 * 339.10330 * 5 4 2 22 22 C 1.52992 * 109.87608 * 117.39377 * 21 5 4 23 23 C 1.53001 * 109.87503 * 238.54462 * 21 5 4 24 24 O 1.43747 * 107.29188 * 357.97081 * 21 5 4 25 25 H 1.08990 * 109.47727 * 297.04040 * 1 2 3 26 26 H 1.09005 * 109.46454 * 57.03959 * 1 2 3 27 27 H 1.09002 * 109.47008 * 177.03789 * 1 2 3 28 28 H 1.09002 * 109.46730 * 167.99554 * 3 2 1 29 29 H 1.09001 * 109.46951 * 287.99218 * 3 2 1 30 30 H 1.09004 * 109.47542 * 47.99981 * 3 2 1 31 31 H 1.09003 * 110.90776 * 37.32958 * 4 2 1 32 32 H 1.08998 * 110.91199 * 273.75912 * 4 2 1 33 33 H 1.09003 * 109.88870 * 242.66574 * 8 7 5 34 34 H 1.09009 * 109.88774 * 3.68778 * 8 7 5 35 35 H 1.09000 * 110.70475 * 140.66578 * 9 8 7 36 36 H 1.09002 * 110.70685 * 263.72744 * 9 8 7 37 37 H 0.97001 * 120.00325 * 179.97438 * 15 14 12 38 38 H 1.09006 * 110.37556 * 332.46777 * 20 7 5 39 39 H 1.09000 * 110.37628 * 94.81001 * 20 7 5 40 40 H 1.09003 * 109.47625 * 66.69174 * 22 21 5 41 41 H 1.09012 * 109.46993 * 186.68662 * 22 21 5 42 42 H 1.08997 * 109.47833 * 306.68221 * 22 21 5 43 43 H 1.09002 * 109.47058 * 52.60670 * 23 21 5 44 44 H 1.09003 * 109.46663 * 172.60496 * 23 21 5 45 45 H 1.09000 * 109.47379 * 292.60372 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0702 1.4315 0.0000 4 6 2.0757 -0.7892 1.2173 5 6 3.4798 -1.2167 0.7247 6 1 4.2406 -0.5329 1.1011 7 7 3.7746 -2.5933 1.1441 8 6 5.2065 -2.9020 0.9748 9 6 5.7440 -3.3476 2.3510 10 6 4.4628 -3.8111 3.0932 11 1 4.2001 -4.8325 2.8181 12 6 4.6272 -3.6823 4.5856 13 1 3.9758 -3.0282 5.1463 14 6 5.6091 -4.3995 5.2355 15 7 6.4026 -5.1958 4.5528 16 14 5.8124 -4.2404 7.0856 17 1 4.5571 -4.6590 7.7593 18 1 6.9301 -5.1077 7.5372 19 1 6.1122 -2.8275 7.4309 20 6 3.4120 -2.8045 2.5617 21 6 3.3851 -1.1261 -0.8107 22 6 4.3699 -0.0774 -1.3316 23 6 3.6953 -2.4893 -1.4323 24 8 2.0398 -0.7362 -1.1336 25 1 -0.3634 0.4671 0.9152 26 1 -0.3632 0.5592 -0.8623 27 1 -0.3633 -1.0263 -0.0531 28 1 3.1389 1.4164 0.2138 29 1 1.9014 1.8834 -0.9774 30 1 1.5551 2.0143 0.7637 31 1 1.4548 -1.6605 1.4260 32 1 2.1502 -0.1476 2.0952 33 1 5.3291 -3.7071 0.2503 34 1 5.7397 -2.0138 0.6356 35 1 6.4461 -4.1742 2.2412 36 1 6.2127 -2.5120 2.8707 37 1 7.0937 -5.7001 5.0100 38 1 3.4728 -1.8661 3.1129 39 1 2.4099 -3.2264 2.6383 40 1 5.3903 -0.4176 -1.1547 41 1 4.2152 0.0668 -2.4010 42 1 4.2058 0.8657 -0.8104 43 1 3.0639 -3.2501 -0.9732 44 1 3.4995 -2.4529 -2.5040 45 1 4.7433 -2.7361 -1.2626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397653578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:08 Heat of formation + Delta-G solvation = -59.933569 kcal Electronic energy + Delta-G solvation = -22331.585547 eV Core-core repulsion = 19348.116047 eV Total energy + Delta-G solvation = -2983.469500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.71622 -39.15149 -35.49096 -34.76789 -33.33446 -31.57975 -30.40443 -28.85008 -28.65654 -27.50345 -26.52273 -24.07795 -21.82887 -21.67665 -20.82808 -20.39323 -18.41461 -17.35382 -16.89035 -16.51948 -16.16100 -15.98341 -15.44610 -15.01520 -14.62655 -14.25232 -14.10338 -13.94258 -13.74090 -13.60325 -13.36946 -13.09990 -13.00550 -12.93565 -12.86722 -12.77931 -12.66766 -12.49849 -12.28603 -12.09148 -11.95768 -11.60289 -11.55157 -11.32204 -11.28410 -11.12387 -10.87690 -10.50918 -10.47663 -9.12379 -8.14147 -6.24977 1.41034 1.42010 1.49725 2.41359 2.83049 3.06056 3.17515 3.53418 3.78456 3.98704 4.01498 4.09248 4.17119 4.21663 4.29132 4.42860 4.47676 4.53007 4.60339 4.65377 4.73328 4.78517 4.83021 4.87490 4.90105 4.91173 4.98074 5.01134 5.05875 5.11872 5.20438 5.24106 5.29475 5.33263 5.35605 5.44713 5.56704 5.59428 5.81684 5.91012 6.01808 6.20953 6.33346 6.37037 6.83945 7.42965 8.94570 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028666 B = 0.005126 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.537038 B = 5460.650674 C = 5964.768627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.095 3.905 3 C -0.166 4.166 4 C -0.140 4.140 5 C 0.055 3.945 6 H 0.049 0.951 7 N -0.518 5.518 8 C 0.050 3.950 9 C -0.108 4.108 10 C 0.039 3.961 11 H 0.002 0.998 12 C -0.534 4.534 13 H 0.054 0.946 14 C 0.016 3.984 15 N -0.917 5.917 16 Si 0.954 3.046 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.066 3.934 21 C 0.111 3.889 22 C -0.168 4.168 23 C -0.129 4.129 24 O -0.374 6.374 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.031 0.969 37 H 0.261 0.739 38 H 0.035 0.965 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.993 12.457 -10.307 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.056 3.944 3 C -0.223 4.223 4 C -0.177 4.177 5 C -0.054 4.054 6 H 0.067 0.933 7 N -0.242 5.242 8 C -0.077 4.077 9 C -0.147 4.147 10 C 0.020 3.980 11 H 0.020 0.980 12 C -0.572 4.572 13 H 0.072 0.928 14 C -0.184 4.184 15 N -0.556 5.556 16 Si 0.780 3.220 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.061 4.061 21 C 0.071 3.929 22 C -0.225 4.225 23 C -0.186 4.186 24 O -0.295 6.295 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.254 11.967 -10.810 17.682 hybrid contribution 1.055 0.115 1.810 2.098 sum -6.200 12.082 -9.000 16.291 Atomic orbital electron populations 1.21738 0.91410 1.02632 1.03374 1.22585 0.95629 0.91810 0.84346 1.22418 1.01700 0.94849 1.03370 1.23295 0.95243 1.00487 0.98722 1.23228 0.97216 0.89334 0.95628 0.93263 1.63696 1.17932 1.22416 1.20149 1.22903 0.87580 0.99962 0.97262 1.22474 0.99256 0.98684 0.94301 1.19677 0.91340 0.93130 0.93895 0.97972 1.21346 1.16478 1.26112 0.93311 0.92787 1.25737 0.95472 0.94686 1.02463 1.70083 1.20059 1.28262 1.37162 0.85672 0.77742 0.78135 0.80474 1.19578 1.21002 1.19629 1.22856 0.98729 0.97949 0.86560 1.22009 0.83226 0.95311 0.92369 1.22509 0.98619 0.99045 1.02327 1.21804 1.02148 0.95268 0.99406 1.88904 1.27744 1.73156 1.39647 0.89644 0.91170 0.92740 0.92004 0.91172 0.90122 0.90771 0.89937 0.90889 0.92575 0.93390 0.95019 0.93028 0.94709 0.92094 0.91593 0.91250 0.90938 0.92397 0.92707 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.99 71.98 0.65 -2.00 16 2 C 0.10 2.24 1.25 -10.11 -0.01 2.23 16 3 C -0.17 -3.16 8.02 71.98 0.58 -2.58 16 4 C -0.14 -3.83 4.46 31.90 0.14 -3.69 16 5 C 0.06 1.68 1.62 45.91 0.07 1.75 16 6 H 0.05 1.53 7.36 -2.39 -0.02 1.51 16 7 N -0.52 -18.85 3.60 -854.56 -3.07 -21.92 16 8 C 0.05 1.88 4.90 86.64 0.42 2.31 16 9 C -0.11 -5.09 5.64 31.77 0.18 -4.92 16 10 C 0.04 1.97 2.96 -10.15 -0.03 1.94 16 11 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 12 C -0.53 -29.42 8.55 25.60 0.22 -29.21 16 13 H 0.05 2.90 7.79 -2.91 -0.02 2.88 16 14 C 0.02 0.87 5.34 84.65 0.45 1.32 16 15 N -0.92 -53.22 12.12 21.45 0.26 -52.96 16 16 Si 0.95 43.40 29.54 68.60 2.03 45.42 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 C 0.07 2.77 4.87 86.78 0.42 3.19 16 21 C 0.11 3.04 1.12 -10.42 -0.01 3.03 16 22 C -0.17 -3.82 8.30 71.98 0.60 -3.22 16 23 C -0.13 -3.68 7.63 71.98 0.55 -3.13 16 24 O -0.37 -10.58 10.36 -148.98 -1.54 -12.13 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.23 5.09 -2.39 -0.01 1.21 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.26 8.12 -2.38 -0.02 1.24 16 31 H 0.07 2.25 7.14 -2.39 -0.02 2.24 16 32 H 0.08 2.10 8.05 -2.39 -0.02 2.08 16 33 H 0.07 2.64 7.11 -2.39 -0.02 2.63 16 34 H 0.06 1.87 7.40 -2.38 -0.02 1.85 16 35 H 0.05 2.46 7.54 -2.39 -0.02 2.45 16 36 H 0.03 1.54 8.04 -2.39 -0.02 1.52 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 38 H 0.03 1.45 7.35 -2.38 -0.02 1.43 16 39 H 0.06 2.51 7.78 -2.39 -0.02 2.49 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.07 1.51 4.97 -2.39 -0.01 1.50 16 43 H 0.06 1.89 7.40 -2.39 -0.02 1.87 16 44 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.95 5.70 -2.39 -0.01 1.93 16 Total: -1.00 -60.07 330.84 2.84 -57.23 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.94 Total: 17.33 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 4.23 Total: -32.98 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -2.81 Total: -74.88 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.54 Total: -12.13 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -60.07 2.84 -57.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397653578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.699 kcal (2) G-P(sol) polarization free energy of solvation -60.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds