Wall clock time and date at job start Mon Mar 30 2020 06:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00281 * 2 1 4 4 H 1.48501 * 109.47380 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46783 * 300.00230 * 3 2 1 6 6 H 1.48501 * 109.47189 * 59.99997 * 3 2 1 7 7 C 1.37885 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99900 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99646 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.50264 * 59.92737 * 9 7 2 11 11 C 1.53115 * 109.53546 * 299.82458 * 9 7 2 12 12 C 1.53115 * 109.15915 * 182.39029 * 11 9 7 13 13 C 1.53035 * 109.28358 * 57.65336 * 12 11 9 14 14 N 1.46852 * 109.51816 * 300.82269 * 13 12 11 15 15 C 1.46903 * 110.99362 * 185.83665 * 14 13 12 16 16 H 1.09005 * 109.62162 * 175.40558 * 15 14 13 17 17 C 1.54232 * 109.63074 * 295.78998 * 15 14 13 18 18 C 1.45549 * 112.40572 * 199.89655 * 17 15 14 19 19 C 1.54241 * 112.40369 * 298.06030 * 18 17 15 20 20 C 1.50474 * 108.68067 * 79.89314 * 19 18 17 21 21 C 1.53820 * 112.64125 * 266.10733 * 20 19 18 22 22 C 1.50478 * 109.79130 * 54.92372 * 15 14 13 23 23 H 1.09001 * 108.87201 * 266.71853 * 22 15 14 24 24 O 1.42903 * 108.87227 * 25.26119 * 22 15 14 25 25 C 1.46840 * 111.19988 * 61.74240 * 14 13 12 26 26 H 0.96995 * 119.99403 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.52451 * 302.28851 * 11 9 7 28 28 H 1.08994 * 109.52476 * 62.48183 * 11 9 7 29 29 H 1.09007 * 109.50418 * 177.59845 * 12 11 9 30 30 H 1.09004 * 109.50421 * 297.71100 * 12 11 9 31 31 H 1.09000 * 109.46669 * 180.80778 * 13 12 11 32 32 H 1.09000 * 109.46452 * 60.83540 * 13 12 11 33 33 H 1.09000 * 108.89805 * 79.14035 * 17 15 14 34 34 H 1.08998 * 108.81748 * 320.59490 * 17 15 14 35 35 H 1.09003 * 108.89340 * 177.31230 * 18 17 15 36 36 H 1.08998 * 108.81910 * 58.76544 * 18 17 15 37 37 H 1.09002 * 109.62887 * 199.70039 * 19 18 17 38 38 H 1.09005 * 109.63035 * 320.08753 * 19 18 17 39 39 H 1.09003 * 108.87839 * 26.72307 * 20 19 18 40 40 H 1.08997 * 108.87774 * 145.16583 * 20 19 18 41 41 H 1.08997 * 108.65549 * 280.62534 * 21 20 19 42 42 H 1.09000 * 108.80846 * 162.33179 * 21 20 19 43 43 H 0.96709 * 113.99593 * 180.02562 * 24 22 15 44 44 H 1.09008 * 109.46324 * 58.26969 * 25 14 13 45 45 H 1.08994 * 109.46465 * 178.24849 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6228 -2.5567 -0.8894 11 6 0.3739 -2.5840 1.2517 12 6 -0.3417 -3.9375 1.2733 13 6 0.6982 -5.0596 1.2358 14 7 1.5110 -4.9348 0.0191 15 6 2.4281 -6.0739 -0.1203 16 1 2.9609 -6.0010 -1.0684 17 6 3.4396 -6.0703 1.0440 18 6 4.6306 -6.8524 0.7467 19 6 4.3106 -8.3417 0.5046 20 6 3.7964 -8.5020 -0.9004 21 6 2.2611 -8.4504 -0.9786 22 6 1.6513 -7.3619 -0.0748 23 1 1.6340 -7.7271 0.9521 24 8 0.3100 -7.1080 -0.4973 25 6 2.2448 -3.6630 -0.0011 26 1 -0.4849 0.8401 0.0004 27 1 0.9975 -2.4875 2.1405 28 1 -0.3640 -1.7820 1.2346 29 1 -0.9347 -4.0211 2.1841 30 1 -0.9950 -4.0176 0.4044 31 1 0.1914 -6.0246 1.2366 32 1 1.3425 -4.9872 2.1120 33 1 2.9586 -6.4830 1.9308 34 1 3.7352 -5.0416 1.2498 35 1 5.3238 -6.7719 1.5840 36 1 5.1059 -6.4439 -0.1451 37 1 5.2151 -8.9362 0.6336 38 1 3.5508 -8.6728 1.2126 39 1 4.2044 -7.7023 -1.5187 40 1 4.1386 -9.4590 -1.2942 41 1 1.8639 -9.4199 -0.6782 42 1 1.9681 -8.2555 -2.0102 43 1 -0.2577 -7.8908 -0.4957 44 1 2.8818 -3.5971 0.8810 45 1 2.8611 -3.6136 -0.8987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397738946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:43 Heat of formation + Delta-G solvation = -60.425899 kcal Electronic energy + Delta-G solvation = -22308.020029 eV Core-core repulsion = 19324.529180 eV Total energy + Delta-G solvation = -2983.490849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.01967 -37.16468 -35.90001 -33.69535 -32.10015 -31.27169 -29.77885 -28.85747 -25.11763 -24.70354 -23.85180 -22.15069 -21.42707 -20.48688 -19.12063 -18.12588 -17.10338 -16.31524 -15.54653 -15.30256 -14.60899 -14.47785 -14.12559 -14.03530 -13.68688 -13.36867 -12.93131 -12.84526 -12.45663 -12.39243 -12.22947 -11.66303 -11.38816 -11.30322 -11.18447 -10.92819 -10.78993 -10.71450 -10.60346 -10.54113 -10.35427 -10.11521 -9.90027 -9.68109 -9.54169 -9.32744 -8.84538 -8.57625 -8.21307 -7.33256 -5.89664 -3.95478 3.34088 3.41904 3.45592 4.27972 4.46159 4.52879 4.62261 4.87081 4.94720 5.05605 5.18248 5.24519 5.30586 5.40221 5.43166 5.57527 5.69841 5.82034 5.94003 5.97368 6.01435 6.04454 6.10678 6.12450 6.15986 6.25552 6.31623 6.34554 6.44668 6.52114 6.61720 6.67393 6.91085 6.94254 7.13110 7.37235 7.53851 7.81312 7.83739 7.94189 8.08971 8.21197 8.29145 8.58546 9.09289 9.68241 11.16292 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.005215 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.826898 B = 5367.965262 C = 5915.884409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.033 0.967 11 C -0.109 4.109 12 C -0.115 4.115 13 C 0.064 3.936 14 N -0.510 5.510 15 C 0.096 3.904 16 H 0.081 0.919 17 C -0.158 4.158 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.148 4.148 22 C 0.117 3.883 23 H 0.043 0.957 24 O -0.534 6.534 25 C 0.064 3.936 26 H 0.258 0.742 27 H 0.026 0.974 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.012 0.988 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.359 0.641 44 H 0.020 0.980 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 -17.770 1.463 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.147 4.147 12 C -0.153 4.153 13 C -0.064 4.064 14 N -0.232 5.232 15 C -0.014 4.014 16 H 0.099 0.901 17 C -0.198 4.198 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.187 4.187 22 C 0.057 3.943 23 H 0.061 0.939 24 O -0.337 6.337 25 C -0.063 4.063 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.106 0.894 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.204 0.796 44 H 0.038 0.962 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.639 -17.016 0.991 17.665 hybrid contribution 0.910 0.313 0.829 1.270 sum 5.549 -16.704 1.820 17.695 Atomic orbital electron populations 1.69917 1.05810 1.26045 1.50931 1.24936 0.94798 0.98858 0.95287 0.86602 0.80121 0.84147 0.77482 1.19922 1.21087 1.21163 1.21210 0.92781 0.90784 1.50302 0.92931 1.18647 0.92641 0.90199 0.94847 0.94837 1.21631 0.99916 0.94918 0.98284 1.21639 0.97388 0.96445 0.99834 1.22084 0.95252 0.99506 0.89515 1.62131 1.22321 1.00951 1.37814 1.21461 0.91579 0.90442 0.97879 0.90062 1.21219 0.97152 1.01694 0.99685 1.20437 0.98021 0.94827 1.01807 1.21373 1.00651 0.96590 0.97054 1.21229 0.94974 1.01808 0.97384 1.22610 0.96074 0.98627 1.01347 1.21635 0.83024 0.94108 0.95515 0.93945 1.86962 1.20455 1.36118 1.90132 1.22359 0.96533 0.89003 0.98379 0.93214 0.95479 0.89381 0.94098 0.92101 0.91043 0.96965 0.92429 0.90620 0.92536 0.92016 0.92086 0.91905 0.91703 0.92364 0.92422 0.91045 0.79603 0.96197 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 11.37 55.43 0.63 -25.37 16 2 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.41 8.56 -34.43 -0.29 -14.71 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.44 2.26 -91.69 -0.21 1.24 16 10 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.11 -2.71 5.03 -26.61 -0.13 -2.84 16 12 C -0.12 -2.42 6.09 -26.65 -0.16 -2.58 16 13 C 0.06 1.21 4.50 -3.83 -0.02 1.19 16 14 N -0.51 -9.89 4.10 -227.43 -0.93 -10.82 16 15 C 0.10 1.49 1.89 -68.33 -0.13 1.36 16 16 H 0.08 1.31 6.98 -51.93 -0.36 0.94 16 17 C -0.16 -2.21 3.79 -29.60 -0.11 -2.32 16 18 C -0.11 -1.28 5.27 -29.60 -0.16 -1.43 16 19 C -0.12 -1.14 5.59 -27.34 -0.15 -1.30 16 20 C -0.12 -1.12 5.30 -27.57 -0.15 -1.27 16 21 C -0.15 -1.53 5.42 -25.75 -0.14 -1.67 16 22 C 0.12 1.50 1.89 -27.44 -0.05 1.45 16 23 H 0.04 0.53 6.56 -51.93 -0.34 0.19 16 24 O -0.53 -7.58 10.42 -35.23 -0.37 -7.95 16 25 C 0.06 1.42 4.20 -3.84 -0.02 1.40 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.23 5.49 -51.93 -0.29 0.95 16 32 H 0.01 0.23 7.18 -51.93 -0.37 -0.14 16 33 H 0.06 0.79 7.01 -51.93 -0.36 0.43 16 34 H 0.08 1.22 5.68 -51.93 -0.30 0.92 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.71 7.48 -51.93 -0.39 0.32 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.61 6.99 -51.93 -0.36 0.24 16 39 H 0.06 0.68 6.65 -51.93 -0.35 0.33 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.36 3.43 9.04 45.56 0.41 3.84 16 44 H 0.02 0.44 6.23 -51.92 -0.32 0.12 16 45 H 0.05 1.21 8.12 -51.93 -0.42 0.79 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -30.13 320.78 -9.79 -39.92 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.12 Total: 2.54 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.81 Total: -19.81 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.30 Total: -36.19 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.37 Total: -7.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.13 -9.79 -39.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397738946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.507 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds