Wall clock time and date at job start Mon Mar 30 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00281 * 2 1 4 4 H 1.48501 * 109.47380 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46783 * 300.00230 * 3 2 1 6 6 H 1.48501 * 109.47189 * 59.99997 * 3 2 1 7 7 C 1.37885 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99900 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99646 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.50264 * 59.92737 * 9 7 2 11 11 C 1.53115 * 109.53546 * 299.82458 * 9 7 2 12 12 C 1.53115 * 109.15915 * 182.39029 * 11 9 7 13 13 C 1.53035 * 109.28358 * 57.65336 * 12 11 9 14 14 N 1.46852 * 109.51816 * 300.82269 * 13 12 11 15 15 C 1.46903 * 110.99362 * 185.83665 * 14 13 12 16 16 H 1.09005 * 109.62162 * 175.40558 * 15 14 13 17 17 C 1.54232 * 109.63074 * 295.78998 * 15 14 13 18 18 C 1.45549 * 112.40572 * 199.89655 * 17 15 14 19 19 C 1.54241 * 112.40369 * 298.06030 * 18 17 15 20 20 C 1.50474 * 108.68067 * 79.89314 * 19 18 17 21 21 C 1.53820 * 112.64125 * 266.10733 * 20 19 18 22 22 C 1.50478 * 109.79130 * 54.92372 * 15 14 13 23 23 H 1.09001 * 108.87201 * 266.71853 * 22 15 14 24 24 O 1.42903 * 108.87227 * 25.26119 * 22 15 14 25 25 C 1.46840 * 111.19988 * 61.74240 * 14 13 12 26 26 H 0.96995 * 119.99403 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.52451 * 302.28851 * 11 9 7 28 28 H 1.08994 * 109.52476 * 62.48183 * 11 9 7 29 29 H 1.09007 * 109.50418 * 177.59845 * 12 11 9 30 30 H 1.09004 * 109.50421 * 297.71100 * 12 11 9 31 31 H 1.09000 * 109.46669 * 180.80778 * 13 12 11 32 32 H 1.09000 * 109.46452 * 60.83540 * 13 12 11 33 33 H 1.09000 * 108.89805 * 79.14035 * 17 15 14 34 34 H 1.08998 * 108.81748 * 320.59490 * 17 15 14 35 35 H 1.09003 * 108.89340 * 177.31230 * 18 17 15 36 36 H 1.08998 * 108.81910 * 58.76544 * 18 17 15 37 37 H 1.09002 * 109.62887 * 199.70039 * 19 18 17 38 38 H 1.09005 * 109.63035 * 320.08753 * 19 18 17 39 39 H 1.09003 * 108.87839 * 26.72307 * 20 19 18 40 40 H 1.08997 * 108.87774 * 145.16583 * 20 19 18 41 41 H 1.08997 * 108.65549 * 280.62534 * 21 20 19 42 42 H 1.09000 * 108.80846 * 162.33179 * 21 20 19 43 43 H 0.96709 * 113.99593 * 180.02562 * 24 22 15 44 44 H 1.09008 * 109.46324 * 58.26969 * 25 14 13 45 45 H 1.08994 * 109.46465 * 178.24849 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6228 -2.5567 -0.8894 11 6 0.3739 -2.5840 1.2517 12 6 -0.3417 -3.9375 1.2733 13 6 0.6982 -5.0596 1.2358 14 7 1.5110 -4.9348 0.0191 15 6 2.4281 -6.0739 -0.1203 16 1 2.9609 -6.0010 -1.0684 17 6 3.4396 -6.0703 1.0440 18 6 4.6306 -6.8524 0.7467 19 6 4.3106 -8.3417 0.5046 20 6 3.7964 -8.5020 -0.9004 21 6 2.2611 -8.4504 -0.9786 22 6 1.6513 -7.3619 -0.0748 23 1 1.6340 -7.7271 0.9521 24 8 0.3100 -7.1080 -0.4973 25 6 2.2448 -3.6630 -0.0011 26 1 -0.4849 0.8401 0.0004 27 1 0.9975 -2.4875 2.1405 28 1 -0.3640 -1.7820 1.2346 29 1 -0.9347 -4.0211 2.1841 30 1 -0.9950 -4.0176 0.4044 31 1 0.1914 -6.0246 1.2366 32 1 1.3425 -4.9872 2.1120 33 1 2.9586 -6.4830 1.9308 34 1 3.7352 -5.0416 1.2498 35 1 5.3238 -6.7719 1.5840 36 1 5.1059 -6.4439 -0.1451 37 1 5.2151 -8.9362 0.6336 38 1 3.5508 -8.6728 1.2126 39 1 4.2044 -7.7023 -1.5187 40 1 4.1386 -9.4590 -1.2942 41 1 1.8639 -9.4199 -0.6782 42 1 1.9681 -8.2555 -2.0102 43 1 -0.2577 -7.8908 -0.4957 44 1 2.8818 -3.5971 0.8810 45 1 2.8611 -3.6136 -0.8987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397738946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:42 Heat of formation + Delta-G solvation = -80.182923 kcal Electronic energy + Delta-G solvation = -22308.876758 eV Core-core repulsion = 19324.529180 eV Total energy + Delta-G solvation = -2984.347578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23651 -38.66435 -36.88999 -35.45614 -33.71857 -32.39550 -31.65757 -30.15453 -26.97064 -26.05524 -24.92644 -23.57013 -23.19692 -21.63246 -20.37777 -19.73680 -18.55330 -17.93101 -16.99835 -16.54820 -16.24989 -15.66595 -15.42563 -15.20295 -14.99856 -14.84097 -14.46479 -14.21152 -14.12635 -13.77727 -13.45355 -13.29292 -12.86525 -12.77130 -12.61055 -12.46756 -12.40568 -12.19049 -11.79242 -11.69778 -11.63718 -11.50790 -11.35827 -11.30972 -11.10983 -10.72576 -10.63049 -10.50452 -10.33433 -8.86655 -8.07408 -6.22098 1.39570 1.40523 1.52520 2.42633 3.07572 3.18983 3.46810 3.68714 3.83731 4.07599 4.12447 4.23224 4.27035 4.31500 4.35795 4.39086 4.40812 4.53137 4.64996 4.69125 4.80306 4.85243 4.93254 4.95789 5.01275 5.01501 5.15693 5.17771 5.21991 5.25992 5.31565 5.34108 5.38367 5.44730 5.46588 5.53474 5.55453 5.64068 5.99920 6.16071 6.26349 6.48574 6.54059 6.91302 7.13398 7.45676 8.97611 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.005215 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.826898 B = 5367.965262 C = 5915.884409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.054 3.946 10 H -0.010 1.010 11 C -0.101 4.101 12 C -0.109 4.109 13 C 0.073 3.927 14 N -0.524 5.524 15 C 0.092 3.908 16 H 0.070 0.930 17 C -0.147 4.147 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.141 4.141 22 C 0.119 3.881 23 H 0.055 0.945 24 O -0.561 6.561 25 C 0.081 3.919 26 H 0.260 0.740 27 H 0.021 0.979 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.380 0.620 44 H 0.019 0.981 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.871 -19.851 2.197 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.068 0.932 9 C 0.035 3.965 10 H 0.008 0.992 11 C -0.139 4.139 12 C -0.147 4.147 13 C -0.055 4.055 14 N -0.247 5.247 15 C -0.017 4.017 16 H 0.088 0.912 17 C -0.186 4.186 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.179 4.179 22 C 0.060 3.940 23 H 0.073 0.927 24 O -0.367 6.367 25 C -0.047 4.047 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.228 0.772 44 H 0.037 0.963 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.626 -19.129 1.724 20.014 hybrid contribution 0.568 0.951 0.565 1.244 sum 6.195 -18.178 2.289 19.340 Atomic orbital electron populations 1.70064 1.07253 1.26975 1.51304 1.25752 0.95669 1.02402 0.94755 0.85540 0.79020 0.79623 0.77661 1.19167 1.20564 1.20455 1.21549 0.92882 0.92213 1.50716 0.93182 1.18568 0.92975 0.91456 0.93513 0.99160 1.21434 0.98972 0.96299 0.97228 1.21559 0.97746 0.95075 1.00288 1.22033 0.94611 0.99503 0.89314 1.62036 1.23291 1.00919 1.38407 1.21580 0.91791 0.90273 0.98032 0.91165 1.21108 0.97828 1.00618 0.99090 1.20428 0.96804 0.95999 1.01920 1.21342 1.01693 0.95031 0.96970 1.21248 0.94382 1.02412 0.97399 1.22532 0.96538 0.98684 1.00146 1.21605 0.82490 0.93016 0.96873 0.92704 1.86887 1.21337 1.38220 1.90294 1.21985 0.95345 0.89464 0.97891 0.93084 0.96054 0.92614 0.91710 0.93680 0.88553 0.96644 0.91797 0.93348 0.91574 0.92634 0.90264 0.91349 0.93051 0.90387 0.89902 0.92022 0.77185 0.96269 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.34 11.37 21.45 0.24 -55.10 16 2 C 0.01 0.74 5.31 84.66 0.45 1.19 16 3 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.54 -31.13 8.56 25.60 0.22 -30.91 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.05 2.93 2.26 -11.49 -0.03 2.90 16 10 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 11 C -0.10 -5.18 5.03 30.67 0.15 -5.02 16 12 C -0.11 -4.58 6.09 30.64 0.19 -4.39 16 13 C 0.07 2.66 4.50 86.32 0.39 3.05 16 14 N -0.52 -20.39 4.10 -873.45 -3.58 -23.96 16 15 C 0.09 2.77 1.89 44.52 0.08 2.86 16 16 H 0.07 2.26 6.98 -2.38 -0.02 2.24 16 17 C -0.15 -3.93 3.79 28.74 0.11 -3.82 16 18 C -0.11 -2.35 5.27 28.74 0.15 -2.20 16 19 C -0.11 -1.79 5.59 30.20 0.17 -1.62 16 20 C -0.12 -1.90 5.30 30.05 0.16 -1.74 16 21 C -0.14 -2.49 5.42 31.23 0.17 -2.32 16 22 C 0.12 2.78 1.89 30.14 0.06 2.84 16 23 H 0.06 1.16 6.56 -2.39 -0.02 1.15 16 24 O -0.56 -14.79 10.42 -148.98 -1.55 -16.34 16 25 C 0.08 3.69 4.20 86.33 0.36 4.05 16 26 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 27 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 3.20 6.17 -2.39 -0.01 3.18 16 29 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.10 3.09 5.49 -2.39 -0.01 3.08 16 32 H 0.02 0.56 7.18 -2.39 -0.02 0.54 16 33 H 0.06 1.61 7.01 -2.39 -0.02 1.60 16 34 H 0.05 1.55 5.68 -2.39 -0.01 1.54 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 1.22 7.48 -2.39 -0.02 1.20 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.04 6.99 -2.38 -0.02 1.02 16 39 H 0.05 0.98 6.65 -2.39 -0.02 0.97 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.38 6.24 9.04 -74.05 -0.67 5.57 16 44 H 0.02 0.88 6.23 -2.38 -0.01 0.86 16 45 H 0.05 2.11 8.12 -2.39 -0.02 2.09 16 Total: -1.00 -67.08 320.78 0.06 -67.01 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.29 Total: 16.36 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 2.63 Total: -35.15 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -3.33 Total: -79.06 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.55 Total: -16.34 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -67.08 0.06 -67.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397738946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.171 kcal (2) G-P(sol) polarization free energy of solvation -67.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds