Wall clock time and date at job start Mon Mar 30 2020 06:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48494 * 109.46926 * 269.99613 * 3 2 1 5 5 H 1.48498 * 109.47104 * 29.99858 * 3 2 1 6 6 H 1.48504 * 109.46823 * 149.99793 * 3 2 1 7 7 C 1.37880 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99716 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.49969 * 60.07829 * 9 7 2 11 11 C 1.53124 * 109.50109 * 299.99926 * 9 7 2 12 12 C 1.53124 * 109.15632 * 182.40384 * 11 9 7 13 13 C 1.53032 * 109.27726 * 57.65763 * 12 11 9 14 14 N 1.46852 * 109.52308 * 300.81807 * 13 12 11 15 15 C 1.46902 * 110.99902 * 185.84183 * 14 13 12 16 16 H 1.09000 * 108.85544 * 306.26800 * 15 14 13 17 17 C 1.50473 * 108.87895 * 64.82697 * 15 14 13 18 18 C 1.54237 * 108.52355 * 214.82713 * 17 15 14 19 19 C 1.45542 * 112.40717 * 280.01309 * 18 17 15 20 20 C 1.54243 * 112.40601 * 61.94049 * 19 18 17 21 21 C 1.50477 * 108.51187 * 280.01253 * 20 19 18 22 22 C 1.54059 * 108.79794 * 187.75219 * 15 14 13 23 23 H 1.09000 * 108.81714 * 76.69719 * 22 15 14 24 24 O 1.42897 * 108.81635 * 318.31047 * 22 15 14 25 25 C 1.46843 * 111.19697 * 61.74448 * 14 13 12 26 26 H 0.96992 * 120.00120 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.51873 * 62.50574 * 11 9 7 28 28 H 1.08997 * 109.52208 * 302.30945 * 11 9 7 29 29 H 1.09001 * 109.50343 * 297.71391 * 12 11 9 30 30 H 1.08996 * 109.50246 * 177.59762 * 12 11 9 31 31 H 1.09001 * 109.46188 * 180.80494 * 13 12 11 32 32 H 1.08996 * 109.45797 * 60.82765 * 13 12 11 33 33 H 1.08999 * 109.62941 * 334.53539 * 17 15 14 34 34 H 1.08995 * 109.63073 * 95.11871 * 17 15 14 35 35 H 1.09000 * 108.89690 * 40.76922 * 18 17 15 36 36 H 1.09006 * 108.89927 * 159.26070 * 18 17 15 37 37 H 1.08998 * 108.89753 * 301.18184 * 19 18 17 38 38 H 1.09005 * 108.81720 * 182.63799 * 19 18 17 39 39 H 1.08996 * 109.63229 * 160.30531 * 20 19 18 40 40 H 1.09000 * 109.63239 * 39.71274 * 20 19 18 41 41 H 1.09002 * 108.87732 * 333.37180 * 21 20 19 42 42 H 1.09003 * 108.79207 * 214.87599 * 21 20 19 43 43 H 0.96700 * 114.00327 * 179.97438 * 24 22 15 44 44 H 1.08999 * 109.46504 * 58.27568 * 25 14 13 45 45 H 1.08998 * 109.46107 * 178.23908 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6257 -2.5583 -0.8902 11 6 0.3700 -2.5808 1.2502 12 6 -0.3457 -3.9343 1.2730 13 6 0.6944 -5.0564 1.2417 14 7 1.5112 -4.9347 0.0274 15 6 2.4288 -6.0742 -0.1062 16 1 3.0096 -6.1681 0.8114 17 6 1.6216 -7.3289 -0.3020 18 6 2.3493 -8.4941 0.3993 19 6 3.4476 -9.0217 -0.3968 20 6 4.5444 -7.9687 -0.6563 21 6 4.0941 -7.0773 -1.7820 22 6 3.3900 -5.8026 -1.2791 23 1 4.1465 -5.0877 -0.9553 24 8 2.6493 -5.2311 -2.3592 25 6 2.2449 -3.6629 0.0062 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3679 -1.7789 1.2285 28 1 0.9908 -2.4819 2.1407 29 1 -0.9962 -4.0166 0.4023 30 1 -0.9415 -4.0156 2.1820 31 1 0.1877 -6.0214 1.2434 32 1 1.3359 -4.9814 2.1198 33 1 0.6316 -7.1994 0.1352 34 1 1.5296 -7.5427 -1.3668 35 1 2.7420 -8.1420 1.3531 36 1 1.6339 -9.2946 0.5881 37 1 3.0560 -9.3668 -1.3537 38 1 3.8885 -9.8682 0.1298 39 1 5.4729 -8.4678 -0.9335 40 1 4.6999 -7.3726 0.2429 41 1 3.4052 -7.6331 -2.4180 42 1 4.9644 -6.7901 -2.3720 43 1 3.1838 -5.0293 -3.1394 44 1 2.8791 -3.5947 0.8901 45 1 2.8643 -3.6159 -0.8894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397738948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:44 Heat of formation + Delta-G solvation = -80.485889 kcal Electronic energy + Delta-G solvation = -22288.860397 eV Core-core repulsion = 19304.499682 eV Total energy + Delta-G solvation = -2984.360715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.06625 -38.76179 -36.89384 -35.52837 -33.66418 -32.47816 -31.60739 -30.29644 -27.07129 -25.61296 -25.35774 -23.57103 -22.73307 -21.43764 -20.39578 -20.09808 -18.49903 -17.92590 -17.45693 -16.62171 -16.17334 -15.62682 -15.33642 -15.12194 -14.92105 -14.65425 -14.38832 -14.25398 -13.98874 -13.89770 -13.62754 -13.17240 -13.01126 -12.85351 -12.67365 -12.53723 -12.46925 -11.99179 -11.83918 -11.70712 -11.50754 -11.37145 -11.33765 -11.25768 -11.15241 -10.74579 -10.56209 -10.54663 -10.34846 -8.97453 -8.06445 -6.20952 1.40472 1.40952 1.51321 2.43034 3.01814 3.19862 3.46600 3.70272 3.85506 4.01497 4.13352 4.21384 4.25989 4.30279 4.35898 4.38930 4.45418 4.52515 4.60838 4.69940 4.78983 4.85194 4.91562 4.98992 5.04685 5.07115 5.11739 5.18165 5.20551 5.25141 5.31627 5.34342 5.40805 5.44846 5.53751 5.54901 5.58561 5.64112 6.01256 6.17708 6.26441 6.47336 6.52191 6.92232 7.04755 7.46548 8.98357 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028263 B = 0.005337 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.450939 B = 5244.928354 C = 5872.389779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.048 0.952 9 C 0.056 3.944 10 H -0.009 1.009 11 C -0.104 4.104 12 C -0.109 4.109 13 C 0.061 3.939 14 N -0.532 5.532 15 C 0.096 3.904 16 H 0.038 0.962 17 C -0.105 4.105 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.139 4.139 22 C 0.111 3.889 23 H 0.032 0.968 24 O -0.563 6.563 25 C 0.088 3.912 26 H 0.260 0.740 27 H 0.057 0.943 28 H 0.020 0.980 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.020 0.980 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.379 0.621 44 H -0.002 1.002 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.405 -18.124 -0.448 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.066 0.934 9 C 0.038 3.962 10 H 0.009 0.991 11 C -0.142 4.142 12 C -0.147 4.147 13 C -0.066 4.066 14 N -0.257 5.257 15 C -0.012 4.012 16 H 0.056 0.944 17 C -0.143 4.143 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.177 4.177 22 C 0.052 3.948 23 H 0.050 0.950 24 O -0.369 6.369 25 C -0.040 4.040 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.227 0.773 44 H 0.016 0.984 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.450 -18.085 -0.420 19.205 hybrid contribution 1.204 1.574 0.282 2.002 sum 7.654 -16.510 -0.138 18.199 Atomic orbital electron populations 1.70049 1.07232 1.27005 1.51307 1.25738 0.95662 1.02339 0.94774 0.85605 0.78689 0.79373 0.78267 1.20055 1.20760 1.19339 1.21505 0.92786 0.92291 1.50730 0.93374 1.18531 0.92962 0.91438 0.93308 0.99075 1.21468 0.99098 0.96274 0.97381 1.21567 0.97521 0.94936 1.00670 1.22124 0.95346 0.99188 0.89982 1.61939 1.24541 1.01649 1.37568 1.21577 0.92592 0.91550 0.95443 0.94385 1.21409 0.98654 0.92747 1.01504 1.20483 0.98160 0.97649 0.98928 1.20490 0.95634 0.98253 1.00864 1.21309 0.98957 0.97070 0.98055 1.22023 1.00406 0.95941 0.99366 1.22321 0.91617 0.93585 0.87293 0.95021 1.86774 1.39402 1.84030 1.26686 1.21954 0.95283 0.88979 0.97751 0.93102 0.92441 0.96150 0.93393 0.91241 0.89136 0.96159 0.91561 0.91572 0.92630 0.90869 0.91752 0.90861 0.90055 0.92597 0.90786 0.90825 0.77299 0.98376 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.21 11.35 21.45 0.24 -54.96 16 2 C 0.01 0.77 5.30 84.65 0.45 1.22 16 3 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.53 -31.09 8.56 25.60 0.22 -30.87 16 8 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 9 C 0.06 3.07 2.27 -11.49 -0.03 3.04 16 10 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 11 C -0.10 -5.31 5.02 30.68 0.15 -5.16 16 12 C -0.11 -4.51 6.09 30.65 0.19 -4.32 16 13 C 0.06 2.21 5.23 86.32 0.45 2.66 16 14 N -0.53 -20.70 4.07 -873.83 -3.56 -24.25 16 15 C 0.10 2.93 1.34 44.46 0.06 2.99 16 16 H 0.04 1.16 6.60 -2.39 -0.02 1.14 16 17 C -0.11 -2.67 5.10 30.20 0.15 -2.52 16 18 C -0.11 -2.14 5.26 28.74 0.15 -1.99 16 19 C -0.12 -1.82 5.26 28.74 0.15 -1.67 16 20 C -0.12 -1.98 5.61 30.20 0.17 -1.81 16 21 C -0.14 -2.76 4.88 30.14 0.15 -2.61 16 22 C 0.11 3.13 2.21 31.31 0.07 3.20 16 23 H 0.03 0.97 7.23 -2.39 -0.02 0.95 16 24 O -0.56 -18.12 11.41 -148.98 -1.70 -19.82 16 25 C 0.09 4.02 4.00 86.33 0.34 4.37 16 26 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 27 H 0.06 3.28 6.15 -2.39 -0.01 3.27 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.09 2.76 5.94 -2.39 -0.01 2.75 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 1.78 5.68 -2.39 -0.01 1.77 16 34 H 0.07 1.75 6.98 -2.39 -0.02 1.74 16 35 H 0.05 1.08 7.47 -2.39 -0.02 1.06 16 36 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.06 0.99 7.47 -2.39 -0.02 0.98 16 38 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.08 6.98 -2.39 -0.02 1.06 16 41 H 0.07 1.47 6.63 -2.39 -0.02 1.46 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.38 8.98 9.04 -74.06 -0.67 8.31 16 44 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.07 3.03 5.29 -2.39 -0.01 3.01 16 Total: -1.00 -66.94 322.74 -0.01 -66.96 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.29 Total: 18.52 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 2.68 Total: -33.46 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -3.31 Total: -79.22 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -1.70 Total: -19.82 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.94 -0.01 -66.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397738948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.530 kcal (2) G-P(sol) polarization free energy of solvation -66.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds