Wall clock time and date at job start Mon Mar 30 2020 06:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48499 * 109.47028 * 270.00229 * 3 2 1 5 5 H 1.48505 * 109.46979 * 30.00139 * 3 2 1 6 6 H 1.48495 * 109.46935 * 149.99912 * 3 2 1 7 7 C 1.37877 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99559 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99901 * 179.97438 * 7 2 1 10 10 H 1.08993 * 109.50178 * 60.08291 * 9 7 2 11 11 C 1.53118 * 109.50486 * 300.00267 * 9 7 2 12 12 C 1.53124 * 109.16054 * 182.40635 * 11 9 7 13 13 C 1.53036 * 109.27870 * 57.65216 * 12 11 9 14 14 N 1.46840 * 109.52568 * 300.82381 * 13 12 11 15 15 C 1.46898 * 111.00391 * 185.83754 * 14 13 12 16 16 H 1.08999 * 108.85397 * 289.49299 * 15 14 13 17 17 C 1.50474 * 108.88128 * 170.92875 * 15 14 13 18 18 C 1.54237 * 108.51291 * 145.06808 * 17 15 14 19 19 C 1.45542 * 112.41228 * 80.00196 * 18 17 15 20 20 C 1.54241 * 112.40048 * 298.06294 * 19 18 17 21 21 C 1.50483 * 108.53113 * 79.97482 * 20 19 18 22 22 C 1.54003 * 112.54447 * 265.93396 * 21 20 19 23 23 H 1.08997 * 108.71638 * 280.73163 * 22 21 20 24 24 O 1.42901 * 108.86694 * 162.48085 * 22 21 20 25 25 C 1.46847 * 111.20023 * 61.73993 * 14 13 12 26 26 H 0.96989 * 120.00284 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.52344 * 62.50235 * 11 9 7 28 28 H 1.09001 * 109.57442 * 302.34123 * 11 9 7 29 29 H 1.08991 * 109.50252 * 177.59650 * 12 11 9 30 30 H 1.08996 * 109.50135 * 297.71373 * 12 11 9 31 31 H 1.09002 * 109.45732 * 60.84000 * 13 12 11 32 32 H 1.09000 * 109.45929 * 180.80517 * 13 12 11 33 33 H 1.08993 * 109.62941 * 264.77856 * 17 15 14 34 34 H 1.08999 * 109.62782 * 25.16548 * 17 15 14 35 35 H 1.09002 * 108.89429 * 200.75912 * 18 17 15 36 36 H 1.09000 * 108.89849 * 319.24594 * 18 17 15 37 37 H 1.09004 * 108.89452 * 58.81313 * 19 18 17 38 38 H 1.08996 * 108.89742 * 177.40423 * 19 18 17 39 39 H 1.09001 * 109.62972 * 199.68575 * 20 19 18 40 40 H 1.09001 * 109.63280 * 320.06751 * 20 19 18 41 41 H 1.09001 * 108.86922 * 26.62973 * 21 20 19 42 42 H 1.08994 * 108.87476 * 145.07323 * 21 20 19 43 43 H 0.96703 * 114.00178 * 56.62601 * 24 22 21 44 44 H 1.09001 * 109.46758 * 178.24411 * 25 14 13 45 45 H 1.09007 * 109.46243 * 58.27519 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8758 -0.6808 0.8900 11 6 4.0223 -0.4730 -1.2506 12 6 5.5523 -0.5298 -1.2740 13 6 6.0042 -1.9916 -1.2412 14 7 5.4910 -2.6369 -0.0261 15 6 6.0190 -4.0010 0.1088 16 1 5.5636 -4.6321 -0.6544 17 6 5.6487 -4.5345 1.4662 18 6 5.3720 -6.0465 1.3394 19 6 6.5955 -6.8343 1.3133 20 6 7.4891 -6.4923 0.1035 21 6 8.2508 -5.2319 0.4127 22 6 7.5431 -3.9699 -0.1145 23 1 7.7401 -3.8788 -1.1827 24 8 8.0829 -2.8256 0.5499 25 6 4.0227 -2.6364 -0.0043 26 1 -0.4850 0.8399 0.0004 27 1 3.6968 0.5670 -1.2300 28 1 3.6261 -0.9612 -2.1410 29 1 5.9203 -0.0555 -2.1836 30 1 5.9492 -0.0068 -0.4040 31 1 5.6184 -2.5106 -2.1187 32 1 7.0933 -2.0352 -1.2433 33 1 6.4719 -4.3699 2.1613 34 1 4.7559 -4.0250 1.8287 35 1 4.7642 -6.3663 2.1858 36 1 4.8159 -6.2277 0.4196 37 1 7.1553 -6.6473 2.2297 38 1 6.3338 -7.8914 1.2695 39 1 8.1891 -7.3082 -0.0769 40 1 6.8680 -6.3409 -0.7793 41 1 8.3649 -5.1450 1.4933 42 1 9.2400 -5.2976 -0.0403 43 1 9.0410 -2.7328 0.4575 44 1 3.6725 -3.1484 0.8920 45 1 3.6461 -3.1525 -0.8876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397738950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:48 Heat of formation + Delta-G solvation = -53.691708 kcal Electronic energy + Delta-G solvation = -22325.297705 eV Core-core repulsion = 19342.098873 eV Total energy + Delta-G solvation = -2983.198832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.97070 -37.53687 -35.98577 -33.80232 -32.28365 -31.44990 -30.18841 -29.24871 -25.42185 -24.57528 -23.99728 -22.30476 -21.13809 -20.49523 -19.11545 -18.77190 -17.06216 -16.70190 -16.34611 -15.28548 -14.87813 -14.34077 -14.09273 -13.97035 -13.58142 -13.43785 -13.24598 -12.89905 -12.83000 -12.61659 -12.33186 -12.12910 -11.93489 -11.57170 -11.13562 -10.98428 -10.87137 -10.65746 -10.51283 -10.39849 -10.34192 -10.26286 -9.90437 -9.85786 -9.66558 -9.51006 -8.97657 -8.81898 -8.44187 -7.58828 -6.00753 -3.99176 3.34257 3.45218 3.50388 4.16708 4.38839 4.49241 4.59055 4.70359 4.85302 5.05445 5.14909 5.22651 5.31391 5.33279 5.37086 5.59006 5.61113 5.68731 5.72322 5.86253 5.90591 5.98053 6.00007 6.01974 6.08017 6.13389 6.21314 6.25280 6.31470 6.39037 6.44082 6.46013 6.55566 6.63301 6.77510 6.94592 6.96139 7.31102 7.54529 7.70636 7.76539 7.87234 7.99176 8.59515 9.02655 9.62821 11.12601 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028985 B = 0.005606 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.785738 B = 4993.235071 C = 5632.578798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.512 4.512 8 H 0.071 0.929 9 C 0.021 3.979 10 H 0.035 0.965 11 C -0.122 4.122 12 C -0.117 4.117 13 C 0.064 3.936 14 N -0.524 5.524 15 C 0.100 3.900 16 H 0.041 0.959 17 C -0.113 4.113 18 C -0.123 4.123 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.150 4.150 22 C 0.113 3.887 23 H 0.043 0.957 24 O -0.539 6.539 25 C 0.073 3.927 26 H 0.262 0.738 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.363 0.637 44 H 0.070 0.930 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.763 -11.131 -0.461 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.187 1.187 7 C -0.550 4.550 8 H 0.090 0.910 9 C 0.002 3.998 10 H 0.053 0.947 11 C -0.159 4.159 12 C -0.155 4.155 13 C -0.064 4.064 14 N -0.248 5.248 15 C -0.009 4.009 16 H 0.059 0.941 17 C -0.151 4.151 18 C -0.160 4.160 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.188 4.188 22 C 0.053 3.947 23 H 0.061 0.939 24 O -0.342 6.342 25 C -0.054 4.054 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.208 0.792 44 H 0.088 0.912 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 17.121 -10.663 0.099 20.170 hybrid contribution 0.638 0.347 -1.054 1.280 sum 17.759 -10.317 -0.954 20.561 Atomic orbital electron populations 1.69903 1.06304 1.26850 1.51246 1.24976 0.94642 0.99027 0.94457 0.86825 0.80074 0.83451 0.77802 1.20813 1.22720 1.18741 1.21025 0.88905 0.94404 1.50680 0.91048 1.19139 0.95737 0.91236 0.93696 0.94664 1.22017 0.92879 1.00027 1.01007 1.21619 0.97785 0.95530 1.00562 1.22026 0.99230 0.95151 0.89966 1.61967 1.09335 1.15760 1.37759 1.21406 0.91544 0.90544 0.97373 0.94147 1.21463 1.03016 0.93830 0.96743 1.20516 0.97626 0.95726 1.02175 1.20495 0.97045 0.99543 0.98141 1.21272 0.98615 0.96730 0.98758 1.22094 0.98825 0.95248 1.02620 1.22306 0.93284 0.84658 0.94412 0.93887 1.86836 1.24987 1.45498 1.76901 1.22173 0.84137 0.99523 0.99536 0.92780 0.93738 0.92804 0.93229 0.91759 0.96487 0.90994 0.91173 0.89977 0.92054 0.92299 0.92193 0.92569 0.92003 0.91639 0.90813 0.92386 0.79250 0.91185 0.96044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 2 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 3 Si 0.89 22.77 24.35 -169.99 -4.14 18.63 16 4 H -0.28 -7.02 6.89 56.52 0.39 -6.63 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.26 -6.56 6.53 56.52 0.37 -6.19 16 7 C -0.51 -14.66 9.15 -34.44 -0.31 -14.97 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.02 0.52 1.85 -91.69 -0.17 0.35 16 10 H 0.04 0.92 7.20 -51.93 -0.37 0.54 16 11 C -0.12 -2.75 4.73 -26.61 -0.13 -2.88 16 12 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 13 C 0.06 1.11 4.78 -3.84 -0.02 1.09 16 14 N -0.52 -9.52 4.07 -227.54 -0.93 -10.44 16 15 C 0.10 1.47 1.34 -68.42 -0.09 1.38 16 16 H 0.04 0.61 6.60 -51.93 -0.34 0.27 16 17 C -0.11 -1.59 5.10 -27.35 -0.14 -1.73 16 18 C -0.12 -1.41 5.26 -29.60 -0.16 -1.57 16 19 C -0.11 -1.10 5.26 -29.60 -0.16 -1.25 16 20 C -0.12 -1.06 5.60 -27.34 -0.15 -1.21 16 21 C -0.15 -1.42 4.88 -27.47 -0.13 -1.55 16 22 C 0.11 1.36 2.21 -25.65 -0.06 1.30 16 23 H 0.04 0.51 7.23 -51.93 -0.38 0.13 16 24 O -0.54 -6.96 11.42 -35.23 -0.40 -7.36 16 25 C 0.07 1.54 4.45 -3.83 -0.02 1.52 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.04 1.06 3.35 -51.93 -0.17 0.89 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 1.11 5.29 -51.93 -0.27 0.83 16 33 H 0.07 0.98 6.97 -51.93 -0.36 0.62 16 34 H 0.08 1.34 5.69 -51.93 -0.30 1.04 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.70 7.47 -51.93 -0.39 0.32 16 37 H 0.06 0.56 7.47 -51.93 -0.39 0.17 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.65 7.00 -51.93 -0.36 0.28 16 41 H 0.07 0.74 6.63 -51.93 -0.34 0.39 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.36 3.04 9.04 45.56 0.41 3.45 16 44 H 0.07 1.47 5.94 -51.93 -0.31 1.16 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 315.94 15.07 4.76 4.76 Total: -1.00 -31.58 315.94 -8.71 -40.29 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.98 Total: 1.49 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -1.79 Total: -19.93 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.15 Total: -37.87 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.40 Total: -7.36 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.58 -8.71 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397738950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.402 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds